Cow genome map
Conread name: | raor023_p21.y1 |
Conread position: | 1-160 |
Cow position: | chr16:28234000-28233849 (view UCSC Genome Browser custom track) |
Alignm length: | 160 |
Alignm identity: | 122 |
Alignm E-value: | 1e-25 |
Alignm gaps (pig, cow): | 88, 0 |
Conread position: | 1-169 |
Cow position: | chr16:2240397-2240226 (view UCSC Genome Browser custom track) |
Alignm length: | 172 |
Alignm identity: | 120 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 89, 0 |
Conread position: | 1-169 |
Cow position: | chr16:34527396-34527567 (view UCSC Genome Browser custom track) |
Alignm length: | 172 |
Alignm identity: | 128 |
Alignm E-value: | 7e-29 |
Alignm gaps (pig, cow): | 88, 0 |
Conread position: | 1-209 |
Cow position: | chr16:15368937-15369142 (view UCSC Genome Browser custom track) |
Alignm length: | 209 |
Alignm identity: | 156 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 83, 0 |
Conread position: | 1-275 |
Cow position: | chr16:36282075-36282358 (view UCSC Genome Browser custom track) |
Alignm length: | 287 |
Alignm identity: | 190 |
Alignm E-value: | 4e-24 |
Alignm gaps (pig, cow): | 86, 220 |
Conread position: | 1-423 |
Cow position: | chr16:39818287-39818692 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 296 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 231 |
Conread position: | 1-521 |
Cow position: | chr16:10376639-10376112 (view UCSC Genome Browser custom track) |
Alignm length: | 544 |
Alignm identity: | 375 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 170, 76 |
Conread position: | 1-537 |
Cow position: | chr16:21184900-21185462 (view UCSC Genome Browser custom track) |
Alignm length: | 565 |
Alignm identity: | 348 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 61 |
Conread position: | 1-540 |
Cow position: | chr16:55112197-55111667 (view UCSC Genome Browser custom track) |
Alignm length: | 548 |
Alignm identity: | 347 |
Alignm E-value: | 6e-39 |
Alignm gaps (pig, cow): | 193, 39 |
Conread position: | 1-551 |
Cow position: | chr16:11051848-11052359 (view UCSC Genome Browser custom track) |
Alignm length: | 554 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 31 |
Conread position: | 1-558 |
Cow position: | chr16:25084272-25084821 (view UCSC Genome Browser custom track) |
Alignm length: | 560 |
Alignm identity: | 392 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 315, 225 |
Conread position: | 1-558 |
Cow position: | chr16:32934791-32935333 (view UCSC Genome Browser custom track) |
Alignm length: | 567 |
Alignm identity: | 372 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 47 |
Conread position: | 1-558 |
Cow position: | chr16:49257946-49257384 (view UCSC Genome Browser custom track) |
Alignm length: | 586 |
Alignm identity: | 425 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 88, 120 |
Conread position: | 1-559 |
Cow position: | chr16:19714183-19713649 (view UCSC Genome Browser custom track) |
Alignm length: | 565 |
Alignm identity: | 383 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 201, 106 |
Conread position: | 1-564 |
Cow position: | chr16:5660493-5661065 (view UCSC Genome Browser custom track) |
Alignm length: | 584 |
Alignm identity: | 398 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 272 |
Conread position: | 1-564 |
Cow position: | chr16:6942241-6942827 (view UCSC Genome Browser custom track) |
Alignm length: | 590 |
Alignm identity: | 399 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 240 |
Conread position: | 1-564 |
Cow position: | chr16:20255646-20255106 (view UCSC Genome Browser custom track) |
Alignm length: | 571 |
Alignm identity: | 397 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 111 |
Conread position: | 1-564 |
Cow position: | chr16:28171741-28171156 (view UCSC Genome Browser custom track) |
Alignm length: | 594 |
Alignm identity: | 411 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 290 |
Conread position: | 1-564 |
Cow position: | chr16:29676644-29676101 (view UCSC Genome Browser custom track) |
Alignm length: | 570 |
Alignm identity: | 395 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 121 |
Conread position: | 1-564 |
Cow position: | chr16:32605444-32606032 (view UCSC Genome Browser custom track) |
Alignm length: | 591 |
Alignm identity: | 400 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 492 |
Conread position: | 3-543 |
Cow position: | chr16:29031572-29032098 (view UCSC Genome Browser custom track) |
Alignm length: | 545 |
Alignm identity: | 403 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 82, 60 |
Conread position: | 4-556 |
Cow position: | chr16:40887597-40887058 (view UCSC Genome Browser custom track) |
Alignm length: | 564 |
Alignm identity: | 360 |
Alignm E-value: | 6e-39 |
Alignm gaps (pig, cow): | 120, 67 |
Conread position: | 4-558 |
Cow position: | chr16:36232947-36232406 (view UCSC Genome Browser custom track) |
Alignm length: | 563 |
Alignm identity: | 384 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 82, 179 |
Conread position: | 7-188 |
Cow position: | chr16:25152496-25152679 (view UCSC Genome Browser custom track) |
Alignm length: | 185 |
Alignm identity: | 130 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 154, 178 |
Conread position: | 7-558 |
Cow position: | chr16:5888120-5888682 (view UCSC Genome Browser custom track) |
Alignm length: | 571 |
Alignm identity: | 365 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 65, 51 |
Conread position: | 8-337 |
Cow position: | chr16:4305645-4305298 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 231 |
Alignm E-value: | 1e-25 |
Alignm gaps (pig, cow): | 80, 235 |
Conread position: | 8-564 |
Cow position: | chr16:31389-31952 (view UCSC Genome Browser custom track) |
Alignm length: | 579 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 234 |
Conread position: | 9-257 |
Cow position: | chr16:44673659-44673907 (view UCSC Genome Browser custom track) |
Alignm length: | 252 |
Alignm identity: | 169 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 58, 180 |
Conread position: | 9-426 |
Cow position: | chr16:14667126-14666719 (view UCSC Genome Browser custom track) |
Alignm length: | 424 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 79, 7 |
Conread position: | 9-544 |
Cow position: | chr16:9776796-9777316 (view UCSC Genome Browser custom track) |
Alignm length: | 543 |
Alignm identity: | 378 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 167 |
Conread position: | 9-558 |
Cow position: | chr16:25458815-25458272 (view UCSC Genome Browser custom track) |
Alignm length: | 562 |
Alignm identity: | 392 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 165 |
Conread position: | 9-563 |
Cow position: | chr16:18688470-18687918 (view UCSC Genome Browser custom track) |
Alignm length: | 570 |
Alignm identity: | 411 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 251 |
Conread position: | 9-564 |
Cow position: | chr16:40297514-40296971 (view UCSC Genome Browser custom track) |
Alignm length: | 563 |
Alignm identity: | 378 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 159 |
Conread position: | 11-564 |
Cow position: | chr16:2728653-2728110 (view UCSC Genome Browser custom track) |
Alignm length: | 561 |
Alignm identity: | 382 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 155 |
Conread position: | 13-371 |
Cow position: | chr16:51083234-51083586 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 142 |
Conread position: | 13-563 |
Cow position: | chr16:408366-407829 (view UCSC Genome Browser custom track) |
Alignm length: | 557 |
Alignm identity: | 386 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 52 |
Conread position: | 13-564 |
Cow position: | chr16:15183471-15184007 (view UCSC Genome Browser custom track) |
Alignm length: | 559 |
Alignm identity: | 381 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 92 |
Conread position: | 13-564 |
Cow position: | chr16:29045695-29046225 (view UCSC Genome Browser custom track) |
Alignm length: | 557 |
Alignm identity: | 379 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 160 |
Conread position: | 16-536 |
Cow position: | chr16:10204749-10204237 (view UCSC Genome Browser custom track) |
Alignm length: | 529 |
Alignm identity: | 371 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 72, 154 |
Conread position: | 16-550 |
Cow position: | chr16:16687537-16688062 (view UCSC Genome Browser custom track) |
Alignm length: | 540 |
Alignm identity: | 382 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 129, 167 |
Conread position: | 16-558 |
Cow position: | chr16:1568776-1568255 (view UCSC Genome Browser custom track) |
Alignm length: | 547 |
Alignm identity: | 375 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 72, 101 |
Conread position: | 16-558 |
Cow position: | chr16:7677027-7676498 (view UCSC Genome Browser custom track) |
Alignm length: | 549 |
Alignm identity: | 382 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 136 |
Conread position: | 16-564 |
Cow position: | chr16:2484470-2483935 (view UCSC Genome Browser custom track) |
Alignm length: | 556 |
Alignm identity: | 386 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 151 |
Conread position: | 16-564 |
Cow position: | chr16:8817438-8816901 (view UCSC Genome Browser custom track) |
Alignm length: | 555 |
Alignm identity: | 385 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 157 |
Conread position: | 16-564 |
Cow position: | chr16:12539256-12538720 (view UCSC Genome Browser custom track) |
Alignm length: | 555 |
Alignm identity: | 388 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 151 |
Conread position: | 16-564 |
Cow position: | chr16:28472429-28471891 (view UCSC Genome Browser custom track) |
Alignm length: | 555 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 157 |
Conread position: | 17-558 |
Cow position: | chr16:25440284-25440817 (view UCSC Genome Browser custom track) |
Alignm length: | 553 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 72, 156 |
Conread position: | 18-564 |
Cow position: | chr16:1429887-1430429 (view UCSC Genome Browser custom track) |
Alignm length: | 555 |
Alignm identity: | 395 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 155 |
Conread position: | 18-564 |
Cow position: | chr16:49236446-49235910 (view UCSC Genome Browser custom track) |
Alignm length: | 548 |
Alignm identity: | 392 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 299, 35 |
Conread position: | 20-189 |
Cow position: | chr16:6550106-6549942 (view UCSC Genome Browser custom track) |
Alignm length: | 172 |
Alignm identity: | 125 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 26, 70 |
Conread position: | 27-378 |
Cow position: | chr16:12302779-12302410 (view UCSC Genome Browser custom track) |
Alignm length: | 373 |
Alignm identity: | 245 |
Alignm E-value: | 8e-31 |
Alignm gaps (pig, cow): | 60, 159 |
Conread position: | 34-564 |
Cow position: | chr16:54647030-54647531 (view UCSC Genome Browser custom track) |
Alignm length: | 536 |
Alignm identity: | 351 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 55, 114 |
Conread position: | 38-453 |
Cow position: | chr16:42051652-42051259 (view UCSC Genome Browser custom track) |
Alignm length: | 418 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 255, 36 |
Conread position: | 46-564 |
Cow position: | chr16:15565450-15565954 (view UCSC Genome Browser custom track) |
Alignm length: | 524 |
Alignm identity: | 360 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 120 |
Conread position: | 57-326 |
Cow position: | chr16:37446639-37446384 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 194 |
Alignm E-value: | 5e-27 |
Alignm gaps (pig, cow): | 32, 110 |
Conread position: | 91-563 |
Cow position: | chr16:4303751-4303268 (view UCSC Genome Browser custom track) |
Alignm length: | 490 |
Alignm identity: | 324 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 149 |
Conread position: | 100-564 |
Cow position: | chr16:43898514-43898064 (view UCSC Genome Browser custom track) |
Alignm length: | 469 |
Alignm identity: | 328 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 45 |
Conread position: | 102-541 |
Cow position: | chr16:25340732-25341150 (view UCSC Genome Browser custom track) |
Alignm length: | 443 |
Alignm identity: | 314 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 194, 47 |
Conread position: | 121-564 |
Cow position: | chr16:31593140-31592701 (view UCSC Genome Browser custom track) |
Alignm length: | 449 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 83, 49 |
Conread position: | 141-451 |
Cow position: | chr16:9929345-9929650 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 221 |
Alignm E-value: | 2.99878e-43 |
Alignm gaps (pig, cow): | 167, 14 |
Conread position: | 143-564 |
Cow position: | chr16:5918264-5918689 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 289 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 111 |
Conread position: | 149-536 |
Cow position: | chr16:10437038-10437431 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 306 |
Conread position: | 151-558 |
Cow position: | chr16:25157419-25157020 (view UCSC Genome Browser custom track) |
Alignm length: | 411 |
Alignm identity: | 312 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 88 |
Conread position: | 165-558 |
Cow position: | chr16:24881881-24881491 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 98 |
Conread position: | 165-564 |
Cow position: | chr16:15491527-15491912 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 64 |
Conread position: | 166-410 |
Cow position: | chr16:31376413-31376181 (view UCSC Genome Browser custom track) |
Alignm length: | 249 |
Alignm identity: | 175 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 131, 20 |
Conread position: | 173-564 |
Cow position: | chr16:23253684-23253301 (view UCSC Genome Browser custom track) |
Alignm length: | 393 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 144, 23 |
Conread position: | 179-564 |
Cow position: | chr16:23670760-23670390 (view UCSC Genome Browser custom track) |
Alignm length: | 389 |
Alignm identity: | 248 |
Alignm E-value: | 5e-26 |
Alignm gaps (pig, cow): | 110, 38 |
Conread position: | 190-519 |
Cow position: | chr16:9457357-9457686 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 212 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 47, 19 |
Conread position: | 204-467 |
Cow position: | chr16:15369287-15369543 (view UCSC Genome Browser custom track) |
Alignm length: | 267 |
Alignm identity: | 191 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 90, 52 |
Conread position: | 204-564 |
Cow position: | chr16:36282238-36282604 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 12 |
Conread position: | 214-526 |
Cow position: | chr16:14422573-14422883 (view UCSC Genome Browser custom track) |
Alignm length: | 317 |
Alignm identity: | 214 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 83, 19 |
Conread position: | 243-564 |
Cow position: | chr16:26662636-26662952 (view UCSC Genome Browser custom track) |
Alignm length: | 325 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 107 |
Conread position: | 258-564 |
Cow position: | chr16:7905541-7905848 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 235 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 180 |
Conread position: | 258-564 |
Cow position: | chr16:42740519-42740215 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 231 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 124 |
Conread position: | 259-564 |
Cow position: | chr16:2239831-2239529 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 212 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 37, 146 |
Conread position: | 261-558 |
Cow position: | chr16:6549620-6549323 (view UCSC Genome Browser custom track) |
Alignm length: | 301 |
Alignm identity: | 236 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 144 |
Conread position: | 267-564 |
Cow position: | chr16:23982218-23982516 (view UCSC Genome Browser custom track) |
Alignm length: | 301 |
Alignm identity: | 223 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 202 |
Conread position: | 268-421 |
Cow position: | chr16:5483414-5483260 (view UCSC Genome Browser custom track) |
Alignm length: | 157 |
Alignm identity: | 114 |
Alignm E-value: | 9e-21 |
Alignm gaps (pig, cow): | 28, 89 |
Conread position: | 269-564 |
Cow position: | chr16:27734896-27734600 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 216 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 200 |
Conread position: | 352-558 |
Cow position: | chr16:2411975-2411771 (view UCSC Genome Browser custom track) |
Alignm length: | 207 |
Alignm identity: | 153 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 114, 0 |
Conread position: | 355-532 |
Cow position: | chr16:10808167-10808336 (view UCSC Genome Browser custom track) |
Alignm length: | 179 |
Alignm identity: | 130 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 166, 26 |
Conread position: | 362-558 |
Cow position: | chr16:16276502-16276306 (view UCSC Genome Browser custom track) |
Alignm length: | 199 |
Alignm identity: | 135 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 16, 106 |
Conread position: | 389-564 |
Cow position: | chr16:25187673-25187846 (view UCSC Genome Browser custom track) |
Alignm length: | 176 |
Alignm identity: | 123 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 82, 0 |
Conread position: | 392-556 |
Cow position: | chr16:36362313-36362153 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 117 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 80, 0 |
Conread position: | 397-564 |
Cow position: | chr16:56551168-56551333 (view UCSC Genome Browser custom track) |
Alignm length: | 168 |
Alignm identity: | 127 |
Alignm E-value: | 2e-30 |
Alignm gaps (pig, cow): | 69, 0 |
Conread position: | 414-563 |
Cow position: | chr16:56320894-56321041 (view UCSC Genome Browser custom track) |
Alignm length: | 150 |
Alignm identity: | 109 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 52, 0 |
Show alignments to all cow chromosomes.