Cow genome map

Conread name: raor023_p21.y1

Conread position: 1-160
Cow position: chr16:28234000-28233849 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 88, 0

Conread position: 1-169
Cow position: chr16:2240397-2240226 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 120
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 89, 0

Conread position: 1-169
Cow position: chr16:34527396-34527567 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 88, 0

Conread position: 1-209
Cow position: chr16:15368937-15369142 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 156
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 83, 0

Conread position: 1-275
Cow position: chr16:36282075-36282358 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 190
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 86, 220

Conread position: 1-423
Cow position: chr16:39818287-39818692 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 231

Conread position: 1-521
Cow position: chr16:10376639-10376112 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 76

Conread position: 1-537
Cow position: chr16:21184900-21185462 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 61

Conread position: 1-540
Cow position: chr16:55112197-55111667 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 347
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 193, 39

Conread position: 1-551
Cow position: chr16:11051848-11052359 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 31

Conread position: 1-558
Cow position: chr16:25084272-25084821 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 225

Conread position: 1-558
Cow position: chr16:32934791-32935333 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 47

Conread position: 1-558
Cow position: chr16:49257946-49257384 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 120

Conread position: 1-559
Cow position: chr16:19714183-19713649 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 106

Conread position: 1-564
Cow position: chr16:5660493-5661065 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 272

Conread position: 1-564
Cow position: chr16:6942241-6942827 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 240

Conread position: 1-564
Cow position: chr16:20255646-20255106 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 111

Conread position: 1-564
Cow position: chr16:28171741-28171156 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 290

Conread position: 1-564
Cow position: chr16:29676644-29676101 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 121

Conread position: 1-564
Cow position: chr16:32605444-32606032 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 492

Conread position: 3-543
Cow position: chr16:29031572-29032098 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 60

Conread position: 4-556
Cow position: chr16:40887597-40887058 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 360
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 120, 67

Conread position: 4-558
Cow position: chr16:36232947-36232406 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 179

Conread position: 7-188
Cow position: chr16:25152496-25152679 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 154, 178

Conread position: 7-558
Cow position: chr16:5888120-5888682 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 365
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 65, 51

Conread position: 8-337
Cow position: chr16:4305645-4305298 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 231
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 80, 235

Conread position: 8-564
Cow position: chr16:31389-31952 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 234

Conread position: 9-257
Cow position: chr16:44673659-44673907 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 169
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 58, 180

Conread position: 9-426
Cow position: chr16:14667126-14666719 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 7

Conread position: 9-544
Cow position: chr16:9776796-9777316 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 167

Conread position: 9-558
Cow position: chr16:25458815-25458272 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 165

Conread position: 9-563
Cow position: chr16:18688470-18687918 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 251

Conread position: 9-564
Cow position: chr16:40297514-40296971 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 159

Conread position: 11-564
Cow position: chr16:2728653-2728110 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 155

Conread position: 13-371
Cow position: chr16:51083234-51083586 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 142

Conread position: 13-563
Cow position: chr16:408366-407829 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 52

Conread position: 13-564
Cow position: chr16:15183471-15184007 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 92

Conread position: 13-564
Cow position: chr16:29045695-29046225 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 160

Conread position: 16-536
Cow position: chr16:10204749-10204237 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 154

Conread position: 16-550
Cow position: chr16:16687537-16688062 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 167

Conread position: 16-558
Cow position: chr16:1568776-1568255 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 101

Conread position: 16-558
Cow position: chr16:7677027-7676498 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 136

Conread position: 16-564
Cow position: chr16:2484470-2483935 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 151

Conread position: 16-564
Cow position: chr16:8817438-8816901 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 157

Conread position: 16-564
Cow position: chr16:12539256-12538720 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 151

Conread position: 16-564
Cow position: chr16:28472429-28471891 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 157

Conread position: 17-558
Cow position: chr16:25440284-25440817 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 156

Conread position: 18-564
Cow position: chr16:1429887-1430429 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 155

Conread position: 18-564
Cow position: chr16:49236446-49235910 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 35

Conread position: 20-189
Cow position: chr16:6550106-6549942 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 26, 70

Conread position: 27-378
Cow position: chr16:12302779-12302410 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 245
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 60, 159

Conread position: 34-564
Cow position: chr16:54647030-54647531 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 351
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 55, 114

Conread position: 38-453
Cow position: chr16:42051652-42051259 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 36

Conread position: 46-564
Cow position: chr16:15565450-15565954 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 120

Conread position: 57-326
Cow position: chr16:37446639-37446384 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 194
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 32, 110

Conread position: 91-563
Cow position: chr16:4303751-4303268 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 149

Conread position: 100-564
Cow position: chr16:43898514-43898064 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 45

Conread position: 102-541
Cow position: chr16:25340732-25341150 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 47

Conread position: 121-564
Cow position: chr16:31593140-31592701 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 49

Conread position: 141-451
Cow position: chr16:9929345-9929650 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 221
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 167, 14

Conread position: 143-564
Cow position: chr16:5918264-5918689 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 111

Conread position: 149-536
Cow position: chr16:10437038-10437431 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 306

Conread position: 151-558
Cow position: chr16:25157419-25157020 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 88

Conread position: 165-558
Cow position: chr16:24881881-24881491 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 98

Conread position: 165-564
Cow position: chr16:15491527-15491912 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 64

Conread position: 166-410
Cow position: chr16:31376413-31376181 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 175
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 131, 20

Conread position: 173-564
Cow position: chr16:23253684-23253301 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 23

Conread position: 179-564
Cow position: chr16:23670760-23670390 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 248
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 110, 38

Conread position: 190-519
Cow position: chr16:9457357-9457686 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 212
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 47, 19

Conread position: 204-467
Cow position: chr16:15369287-15369543 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 191
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 90, 52

Conread position: 204-564
Cow position: chr16:36282238-36282604 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 12

Conread position: 214-526
Cow position: chr16:14422573-14422883 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 214
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 83, 19

Conread position: 243-564
Cow position: chr16:26662636-26662952 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 107

Conread position: 258-564
Cow position: chr16:7905541-7905848 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 180

Conread position: 258-564
Cow position: chr16:42740519-42740215 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 124

Conread position: 259-564
Cow position: chr16:2239831-2239529 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 212
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 37, 146

Conread position: 261-558
Cow position: chr16:6549620-6549323 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 144

Conread position: 267-564
Cow position: chr16:23982218-23982516 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 202

Conread position: 268-421
Cow position: chr16:5483414-5483260 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 28, 89

Conread position: 269-564
Cow position: chr16:27734896-27734600 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 200

Conread position: 352-558
Cow position: chr16:2411975-2411771 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 114, 0

Conread position: 355-532
Cow position: chr16:10808167-10808336 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 166, 26

Conread position: 362-558
Cow position: chr16:16276502-16276306 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 135
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 16, 106

Conread position: 389-564
Cow position: chr16:25187673-25187846 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 82, 0

Conread position: 392-556
Cow position: chr16:36362313-36362153 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 80, 0

Conread position: 397-564
Cow position: chr16:56551168-56551333 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 69, 0

Conread position: 414-563
Cow position: chr16:56320894-56321041 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 52, 0

Show alignments to all cow chromosomes.