Cow genome map
| Conread name: | raor023_p21.y1 |
| Conread position: | 1-161 |
| Cow position: | chr17:20088640-20088482 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 150, 96 |
| Conread position: | 1-224 |
| Cow position: | chr17:15417078-15417299 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 85, 172 |
| Conread position: | 1-238 |
| Cow position: | chr17:455627-455387 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 1-315 |
| Cow position: | chr17:1878765-1879079 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 17, 35 |
| Conread position: | 1-401 |
| Cow position: | chr17:1945423-1945798 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 284 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 86, 22 |
| Conread position: | 1-421 |
| Cow position: | chr17:180828-181257 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 260 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 123, 210 |
| Conread position: | 1-433 |
| Cow position: | chr17:6119346-6119803 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 303 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 88, 289 |
| Conread position: | 1-459 |
| Cow position: | chr17:31200842-31200387 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 42 |
| Conread position: | 1-530 |
| Cow position: | chr17:1284522-1284012 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 245 |
| Conread position: | 1-551 |
| Cow position: | chr17:153226-152703 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 87 |
| Conread position: | 1-557 |
| Cow position: | chr17:2146450-2146976 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 363 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 85, 163 |
| Conread position: | 1-558 |
| Cow position: | chr17:4080873-4081424 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 112 |
| Conread position: | 1-558 |
| Cow position: | chr17:23857787-23857259 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 38 |
| Conread position: | 1-563 |
| Cow position: | chr17:8208305-8208887 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 279 |
| Conread position: | 1-564 |
| Cow position: | chr17:1383616-1383033 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 289 |
| Conread position: | 1-564 |
| Cow position: | chr17:2261316-2261891 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 270 |
| Conread position: | 1-564 |
| Cow position: | chr17:2286618-2287170 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 57 |
| Conread position: | 1-564 |
| Cow position: | chr17:6089924-6089380 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 199 |
| Conread position: | 1-564 |
| Cow position: | chr17:9654254-9653675 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 289 |
| Conread position: | 1-564 |
| Cow position: | chr17:11782567-11783152 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 150 |
| Conread position: | 1-564 |
| Cow position: | chr17:14217830-14217243 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 280 |
| Conread position: | 1-564 |
| Cow position: | chr17:15144164-15143588 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 138 |
| Conread position: | 1-564 |
| Cow position: | chr17:15370324-15370858 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 15 |
| Conread position: | 1-564 |
| Cow position: | chr17:20666525-20665945 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 172 |
| Conread position: | 1-564 |
| Cow position: | chr17:22160111-22160697 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 289 |
| Conread position: | 1-564 |
| Cow position: | chr17:22430226-22429701 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 164 |
| Conread position: | 1-564 |
| Cow position: | chr17:24780249-24780829 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 17 |
| Conread position: | 1-564 |
| Cow position: | chr17:27345049-27345586 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 222 |
| Conread position: | 1-564 |
| Cow position: | chr17:43987718-43988316 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 246 |
| Conread position: | 1-564 |
| Cow position: | chr17:44853669-44853153 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 107 |
| Conread position: | 3-312 |
| Cow position: | chr17:42263793-42264084 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 3-553 |
| Cow position: | chr17:20400920-20401453 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 43 |
| Conread position: | 4-170 |
| Cow position: | chr17:16889395-16889561 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 83, 123 |
| Conread position: | 4-471 |
| Cow position: | chr17:6258937-6259391 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 171 |
| Conread position: | 5-564 |
| Cow position: | chr17:4059339-4059884 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 61 |
| Conread position: | 7-169 |
| Cow position: | chr17:1775296-1775137 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 7-221 |
| Cow position: | chr17:35591484-35591696 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 8-558 |
| Cow position: | chr17:15157744-15157186 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 207 |
| Conread position: | 9-564 |
| Cow position: | chr17:19270111-19269585 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 166 |
| Conread position: | 13-564 |
| Cow position: | chr17:2578805-2579339 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 154 |
| Conread position: | 13-564 |
| Cow position: | chr17:13857545-13856988 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 128 |
| Conread position: | 13-564 |
| Cow position: | chr17:13928923-13929449 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 25 |
| Conread position: | 16-536 |
| Cow position: | chr17:15322080-15322575 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 130 |
| Conread position: | 16-564 |
| Cow position: | chr17:18104437-18103899 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 162 |
| Conread position: | 18-563 |
| Cow position: | chr17:229077-228522 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 181 |
| Conread position: | 23-564 |
| Cow position: | chr17:24633174-24633735 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 218 |
| Conread position: | 24-500 |
| Cow position: | chr17:32024961-32024479 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 6 |
| Conread position: | 25-269 |
| Cow position: | chr17:3694424-3694182 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 60, 138 |
| Conread position: | 28-564 |
| Cow position: | chr17:3643569-3643055 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 91 |
| Conread position: | 28-564 |
| Cow position: | chr17:16860316-16859775 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 87 |
| Conread position: | 40-166 |
| Cow position: | chr17:248948-249077 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 44-559 |
| Cow position: | chr17:2249310-2248805 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 93 |
| Conread position: | 46-453 |
| Cow position: | chr17:55387-55010 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 120 |
| Conread position: | 46-563 |
| Cow position: | chr17:40803666-40804177 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 167 |
| Conread position: | 76-563 |
| Cow position: | chr17:35591516-35591995 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 45 |
| Conread position: | 76-564 |
| Cow position: | chr17:11088431-11087943 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 134 |
| Conread position: | 139-564 |
| Cow position: | chr17:249286-249696 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 90 |
| Conread position: | 150-564 |
| Cow position: | chr17:14893533-14893942 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 285 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 24, 15 |
| Conread position: | 189-558 |
| Cow position: | chr17:4294804-4295142 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 128, 67 |
| Conread position: | 204-564 |
| Cow position: | chr17:25737086-25737444 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 58 |
| Conread position: | 207-558 |
| Cow position: | chr17:16889551-16889900 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 9 |
| Conread position: | 212-558 |
| Cow position: | chr17:14326065-14325719 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 17 |
| Conread position: | 238-564 |
| Cow position: | chr17:39933144-39933463 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 243-463 |
| Cow position: | chr17:19609438-19609214 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 28 |
| Conread position: | 258-481 |
| Cow position: | chr17:20088273-20088050 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 59, 28 |
| Conread position: | 258-558 |
| Cow position: | chr17:28109570-28109861 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 110 |
| Conread position: | 258-564 |
| Cow position: | chr17:15435269-15435572 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 36, 89 |
| Conread position: | 261-471 |
| Cow position: | chr17:22131418-22131631 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 33, 206 |
| Conread position: | 301-564 |
| Cow position: | chr17:2173401-2173661 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 16, 80 |
| Conread position: | 304-562 |
| Cow position: | chr17:15849922-15850176 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 9, 26 |
| Conread position: | 308-564 |
| Cow position: | chr17:2737905-2738159 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 187 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 9, 74 |
| Conread position: | 316-564 |
| Cow position: | chr17:1879627-1879873 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 118, 152 |
| Conread position: | 368-564 |
| Cow position: | chr17:1946568-1946759 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 370-558 |
| Cow position: | chr17:20183637-20183452 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 25, 78 |
| Conread position: | 385-564 |
| Cow position: | chr17:18185921-18185743 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 8, 82 |
Show alignments to all cow chromosomes.