Cow genome map
| Conread name: | raor023_p21.y1 |
| Conread position: | 1-181 |
| Cow position: | chr18:33268320-33268502 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 86, 174 |
| Conread position: | 1-186 |
| Cow position: | chr18:18896999-18897186 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 86, 180 |
| Conread position: | 1-216 |
| Cow position: | chr18:54172633-54172421 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 85, 27 |
| Conread position: | 1-238 |
| Cow position: | chr18:30198109-30198348 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 86, 103 |
| Conread position: | 1-239 |
| Cow position: | chr18:53784941-53785169 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 85, 165 |
| Conread position: | 1-244 |
| Cow position: | chr18:32293227-32293473 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 86, 239 |
| Conread position: | 1-294 |
| Cow position: | chr18:17993306-17993014 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 72, 132 |
| Conread position: | 1-386 |
| Cow position: | chr18:23746569-23746159 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 84, 240 |
| Conread position: | 1-403 |
| Cow position: | chr18:29236204-29236609 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 56 |
| Conread position: | 1-557 |
| Cow position: | chr18:43147476-43146942 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 130 |
| Conread position: | 1-562 |
| Cow position: | chr18:33358311-33358854 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 158 |
| Conread position: | 1-563 |
| Cow position: | chr18:45958137-45958671 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 103 |
| Conread position: | 1-563 |
| Cow position: | chr18:55089521-55088937 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 220 |
| Conread position: | 1-564 |
| Cow position: | chr18:11275676-11275117 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 123 |
| Conread position: | 1-564 |
| Cow position: | chr18:16078111-16078688 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 121 |
| Conread position: | 1-564 |
| Cow position: | chr18:16660573-16660016 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 230 |
| Conread position: | 1-564 |
| Cow position: | chr18:33335301-33335857 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 223 |
| Conread position: | 1-564 |
| Cow position: | chr18:37586260-37585675 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 289 |
| Conread position: | 1-564 |
| Cow position: | chr18:44621161-44621748 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 243 |
| Conread position: | 1-564 |
| Cow position: | chr18:51257445-51257966 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 166 |
| Conread position: | 1-564 |
| Cow position: | chr18:51659830-51660406 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 269 |
| Conread position: | 3-209 |
| Cow position: | chr18:2020452-2020244 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 84, 65 |
| Conread position: | 4-558 |
| Cow position: | chr18:39748038-39748561 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 219 |
| Conread position: | 4-564 |
| Cow position: | chr18:25349480-25350028 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 144 |
| Conread position: | 7-539 |
| Cow position: | chr18:54001909-54002456 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 306 |
| Conread position: | 11-563 |
| Cow position: | chr18:19351790-19352374 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 280 |
| Conread position: | 13-500 |
| Cow position: | chr18:54024918-54024434 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 17 |
| Conread position: | 16-238 |
| Cow position: | chr18:6869946-6869733 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 71, 151 |
| Conread position: | 16-564 |
| Cow position: | chr18:28974446-28973914 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 16-564 |
| Cow position: | chr18:36507784-36508322 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 151 |
| Conread position: | 16-564 |
| Cow position: | chr18:41841374-41840836 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 159 |
| Conread position: | 18-542 |
| Cow position: | chr18:16177160-16176640 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 132 |
| Conread position: | 18-559 |
| Cow position: | chr18:27838844-27838319 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 25-558 |
| Cow position: | chr18:23797111-23797632 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 148 |
| Conread position: | 31-459 |
| Cow position: | chr18:35287720-35288136 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 44, 119 |
| Conread position: | 40-558 |
| Cow position: | chr18:23944875-23944388 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 127 |
| Conread position: | 45-564 |
| Cow position: | chr18:37504546-37505052 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 128 |
| Conread position: | 46-469 |
| Cow position: | chr18:14129776-14130190 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 127 |
| Conread position: | 46-562 |
| Cow position: | chr18:48221381-48221864 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 121 |
| Conread position: | 53-564 |
| Cow position: | chr18:35334985-35335478 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 190 |
| Conread position: | 65-563 |
| Cow position: | chr18:51480340-51480825 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 101 |
| Conread position: | 150-564 |
| Cow position: | chr18:47741594-47742007 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 116 |
| Conread position: | 190-558 |
| Cow position: | chr18:37599913-37599544 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 39, 19 |
| Conread position: | 194-558 |
| Cow position: | chr18:54172222-54171860 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 10 |
| Conread position: | 197-564 |
| Cow position: | chr18:32293396-32293760 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 30 |
| Conread position: | 204-557 |
| Cow position: | chr18:51310215-51310564 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 23 |
| Conread position: | 217-562 |
| Cow position: | chr18:14415622-14415963 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 45 |
| Conread position: | 249-564 |
| Cow position: | chr18:22602158-22602476 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 107 |
| Conread position: | 255-564 |
| Cow position: | chr18:2020000-2019697 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 129 |
| Conread position: | 256-564 |
| Cow position: | chr18:40478065-40478376 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 92 |
| Conread position: | 258-516 |
| Cow position: | chr18:47719887-47719629 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 203 |
| Conread position: | 258-564 |
| Cow position: | chr18:1520810-1521120 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 112 |
| Conread position: | 258-564 |
| Cow position: | chr18:17992879-17992573 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 183 |
| Conread position: | 258-564 |
| Cow position: | chr18:33268526-33268831 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 36 |
| Conread position: | 262-564 |
| Cow position: | chr18:32651682-32651984 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 203 |
| Conread position: | 269-564 |
| Cow position: | chr18:27986722-27987016 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 178 |
| Conread position: | 276-564 |
| Cow position: | chr18:9187062-9186778 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 15, 113 |
| Conread position: | 282-564 |
| Cow position: | chr18:19540164-19539886 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 204 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 14, 53 |
| Conread position: | 299-564 |
| Cow position: | chr18:44601268-44601527 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 43 |
| Conread position: | 335-564 |
| Cow position: | chr18:51689390-51689615 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 350-564 |
| Cow position: | chr18:16533762-16533968 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 32, 7 |
| Conread position: | 354-564 |
| Cow position: | chr18:6869473-6869268 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 168, 17 |
| Conread position: | 375-564 |
| Cow position: | chr18:2887222-2887032 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 46, 37 |
| Conread position: | 380-562 |
| Cow position: | chr18:54269277-54269453 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 383-558 |
| Cow position: | chr18:53785652-53785822 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 9, 0 |
Show alignments to all cow chromosomes.