Cow genome map
| Conread name: | raor023_p21.y1 |
| Conread position: | 1-162 |
| Cow position: | chr19:32238393-32238229 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 1-167 |
| Cow position: | chr19:32665007-32665176 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 1-167 |
| Cow position: | chr19:39687457-39687626 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 82, 41 |
| Conread position: | 1-169 |
| Cow position: | chr19:26272003-26271832 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 1-179 |
| Cow position: | chr19:30371502-30371677 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 85, 120 |
| Conread position: | 1-231 |
| Cow position: | chr19:353200-352976 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 225, 89 |
| Conread position: | 1-234 |
| Cow position: | chr19:24748389-24748638 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 66, 198 |
| Conread position: | 1-315 |
| Cow position: | chr19:495137-495451 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 84, 198 |
| Conread position: | 1-420 |
| Cow position: | chr19:801444-801842 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 290 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 86, 221 |
| Conread position: | 1-463 |
| Cow position: | chr19:36476802-36477250 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 312 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 86, 166 |
| Conread position: | 1-558 |
| Cow position: | chr19:4533318-4532760 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 173 |
| Conread position: | 1-558 |
| Cow position: | chr19:35978712-35979253 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 347 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 76, 90 |
| Conread position: | 1-559 |
| Cow position: | chr19:772022-772587 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 232 |
| Conread position: | 1-562 |
| Cow position: | chr19:29209014-29209552 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 65 |
| Conread position: | 1-563 |
| Cow position: | chr19:32212653-32212078 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 289 |
| Conread position: | 1-564 |
| Cow position: | chr19:33860-34413 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 165 |
| Conread position: | 1-564 |
| Cow position: | chr19:37310-37889 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 244 |
| Conread position: | 1-564 |
| Cow position: | chr19:685259-685836 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 388 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 58, 292 |
| Conread position: | 1-564 |
| Cow position: | chr19:1031568-1032099 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 227 |
| Conread position: | 1-564 |
| Cow position: | chr19:4252908-4252365 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 107 |
| Conread position: | 1-564 |
| Cow position: | chr19:7341484-7342061 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 76 |
| Conread position: | 1-564 |
| Cow position: | chr19:32192991-32193570 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 338 |
| Conread position: | 1-564 |
| Cow position: | chr19:32223978-32223446 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 190 |
| Conread position: | 1-564 |
| Cow position: | chr19:40852991-40852437 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 25 |
| Conread position: | 1-564 |
| Cow position: | chr19:43143127-43143709 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 218 |
| Conread position: | 1-564 |
| Cow position: | chr19:52152836-52152268 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 236 |
| Conread position: | 2-226 |
| Cow position: | chr19:39546115-39546337 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 145, 14 |
| Conread position: | 3-391 |
| Cow position: | chr19:27053381-27053012 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 44 |
| Conread position: | 3-564 |
| Cow position: | chr19:171657-172204 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 13 |
| Conread position: | 3-564 |
| Cow position: | chr19:416108-416646 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 180 |
| Conread position: | 4-555 |
| Cow position: | chr19:76799-76257 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 227 |
| Conread position: | 4-564 |
| Cow position: | chr19:39389971-39390510 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 12 |
| Conread position: | 7-558 |
| Cow position: | chr19:203412-203950 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 31 |
| Conread position: | 8-564 |
| Cow position: | chr19:32244086-32244677 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 261 |
| Conread position: | 9-564 |
| Cow position: | chr19:35376016-35376551 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 13-403 |
| Cow position: | chr19:544455-544056 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 257 |
| Conread position: | 13-446 |
| Cow position: | chr19:33872696-33873116 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 160 |
| Conread position: | 13-559 |
| Cow position: | chr19:260887-261423 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 107 |
| Conread position: | 13-564 |
| Cow position: | chr19:40888181-40887652 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 87 |
| Conread position: | 16-536 |
| Cow position: | chr19:4384933-4385450 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 158 |
| Conread position: | 16-558 |
| Cow position: | chr19:28582175-28581667 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 41 |
| Conread position: | 16-564 |
| Cow position: | chr19:10672851-10672313 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 149 |
| Conread position: | 16-564 |
| Cow position: | chr19:33941072-33941605 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 77 |
| Conread position: | 16-564 |
| Cow position: | chr19:55078205-55078739 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 72-564 |
| Cow position: | chr19:28592769-28593270 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 10 |
| Conread position: | 76-466 |
| Cow position: | chr19:351075-350668 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 16, 112 |
| Conread position: | 104-564 |
| Cow position: | chr19:30754715-30755171 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 290 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 193, 78 |
| Conread position: | 130-564 |
| Cow position: | chr19:378313-377882 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 302 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 166, 99 |
| Conread position: | 168-564 |
| Cow position: | chr19:894015-893620 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 268 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 25, 83 |
| Conread position: | 191-564 |
| Cow position: | chr19:359871-359511 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 96, 151 |
| Conread position: | 196-564 |
| Cow position: | chr19:440021-439650 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 67 |
| Conread position: | 196-564 |
| Cow position: | chr19:30371901-30372275 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 213-558 |
| Cow position: | chr19:20125278-20125608 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 232-564 |
| Cow position: | chr19:39546305-39546621 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 12, 38 |
| Conread position: | 237-564 |
| Cow position: | chr19:32665197-32665523 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 232 |
| Conread position: | 258-530 |
| Cow position: | chr19:32238169-32237898 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 203 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 190, 53 |
| Conread position: | 258-533 |
| Cow position: | chr19:39688236-39688505 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 94 |
| Conread position: | 258-558 |
| Cow position: | chr19:171057-170753 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 36, 207 |
| Conread position: | 258-562 |
| Cow position: | chr19:31341410-31341697 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 60, 35 |
| Conread position: | 258-564 |
| Cow position: | chr19:7487999-7488306 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 211 |
| Conread position: | 408-557 |
| Cow position: | chr19:28376370-28376518 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 145, 58 |
Show alignments to all cow chromosomes.