Cow genome map
| Conread name: | raor023_p21.y1 |
| Conread position: | 1-146 |
| Cow position: | chr20:1058329-1058181 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 1-162 |
| Cow position: | chr20:3032383-3032548 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-266 |
| Cow position: | chr20:5483618-5483890 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 64, 120 |
| Conread position: | 1-344 |
| Cow position: | chr20:19192543-19192911 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 84, 240 |
| Conread position: | 1-424 |
| Cow position: | chr20:13681682-13681279 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 107 |
| Conread position: | 1-450 |
| Cow position: | chr20:31123770-31124244 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 289 |
| Conread position: | 1-516 |
| Cow position: | chr20:11276888-11276394 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 229 |
| Conread position: | 1-557 |
| Cow position: | chr20:22205937-22206491 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 373 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 85, 21 |
| Conread position: | 1-557 |
| Cow position: | chr20:28593134-28593691 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 188 |
| Conread position: | 1-558 |
| Cow position: | chr20:3252733-3252189 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 89 |
| Conread position: | 1-558 |
| Cow position: | chr20:21392972-21393510 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 17 |
| Conread position: | 1-562 |
| Cow position: | chr20:8314020-8313488 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 89 |
| Conread position: | 1-564 |
| Cow position: | chr20:822121-822717 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 241 |
| Conread position: | 1-564 |
| Cow position: | chr20:10103149-10102599 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 83 |
| Conread position: | 1-564 |
| Cow position: | chr20:15064145-15064719 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 233 |
| Conread position: | 1-564 |
| Cow position: | chr20:19437336-19437908 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 72 |
| Conread position: | 1-564 |
| Cow position: | chr20:22718262-22717745 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 369 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 1-564 |
| Cow position: | chr20:23798271-23798832 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 150 |
| Conread position: | 2-249 |
| Cow position: | chr20:24613981-24614228 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 85, 206 |
| Conread position: | 4-563 |
| Cow position: | chr20:23470266-23469710 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 175 |
| Conread position: | 5-222 |
| Cow position: | chr20:10846902-10846679 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 87, 102 |
| Conread position: | 15-564 |
| Cow position: | chr20:27868609-27869147 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 158 |
| Conread position: | 16-397 |
| Cow position: | chr20:35118664-35119032 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 16-407 |
| Cow position: | chr20:15291461-15291843 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 96 |
| Conread position: | 16-473 |
| Cow position: | chr20:8005100-8004653 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 16-550 |
| Cow position: | chr20:30683751-30684277 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 16-564 |
| Cow position: | chr20:5534360-5534889 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 16-564 |
| Cow position: | chr20:7117058-7116519 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 16-564 |
| Cow position: | chr20:13762325-13762852 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 111 |
| Conread position: | 16-564 |
| Cow position: | chr20:21913751-21914276 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 16-564 |
| Cow position: | chr20:25851573-25851040 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 151 |
| Conread position: | 16-564 |
| Cow position: | chr20:28160178-28160730 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 131 |
| Conread position: | 19-557 |
| Cow position: | chr20:18316171-18315642 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 71 |
| Conread position: | 26-162 |
| Cow position: | chr20:19006179-19006040 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 126-564 |
| Cow position: | chr20:4800134-4799701 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 14 |
| Conread position: | 173-442 |
| Cow position: | chr20:29947746-29948016 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 197 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 121, 89 |
| Conread position: | 181-557 |
| Cow position: | chr20:20905611-20905244 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 116, 7 |
| Conread position: | 196-564 |
| Cow position: | chr20:12439177-12438811 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 67 |
| Conread position: | 199-520 |
| Cow position: | chr20:8371299-8370988 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 92, 9 |
| Conread position: | 204-558 |
| Cow position: | chr20:31379277-31378938 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 87, 47 |
| Conread position: | 214-564 |
| Cow position: | chr20:15098270-15097928 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 26, 52 |
| Conread position: | 235-564 |
| Cow position: | chr20:10846453-10846128 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 31 |
| Conread position: | 249-564 |
| Cow position: | chr20:5561083-5560765 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 226 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 22, 107 |
| Conread position: | 258-558 |
| Cow position: | chr20:24614193-24614483 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 192 |
| Conread position: | 258-564 |
| Cow position: | chr20:28565957-28565646 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 259-536 |
| Cow position: | chr20:3270367-3270630 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 35, 129 |
| Conread position: | 261-528 |
| Cow position: | chr20:3032584-3032844 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 33, 159 |
| Conread position: | 266-558 |
| Cow position: | chr20:5483845-5484136 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 42 |
| Conread position: | 335-562 |
| Cow position: | chr20:35119296-35119521 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 132 |
| Conread position: | 350-564 |
| Cow position: | chr20:19192391-19192178 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 11, 117 |
| Conread position: | 352-562 |
| Cow position: | chr20:35119065-35119272 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 377-564 |
| Cow position: | chr20:11679345-11679160 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 407-564 |
| Cow position: | chr20:24390168-24390324 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 63, 0 |
Show alignments to all cow chromosomes.