Cow genome map
| Conread name: | raor023_p21.y1 |
| Conread position: | 1-162 |
| Cow position: | chr21:3614839-3615004 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-162 |
| Cow position: | chr21:4455610-4455774 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 1-193 |
| Cow position: | chr21:23809285-23809480 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-207 |
| Cow position: | chr21:34292328-34292533 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 1-249 |
| Cow position: | chr21:13124454-13124199 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 1-273 |
| Cow position: | chr21:29086025-29086299 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 45, 53 |
| Conread position: | 1-368 |
| Cow position: | chr21:2542362-2541996 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 209 |
| Conread position: | 1-375 |
| Cow position: | chr21:2454203-2454600 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 84, 47 |
| Conread position: | 1-395 |
| Cow position: | chr21:19609599-19610018 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 284 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 79, 289 |
| Conread position: | 1-500 |
| Cow position: | chr21:5016543-5016023 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 385 |
| Conread position: | 1-521 |
| Cow position: | chr21:47939006-47939507 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 111 |
| Conread position: | 1-529 |
| Cow position: | chr21:20745212-20744717 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 350 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 85, 165 |
| Conread position: | 1-558 |
| Cow position: | chr21:2477024-2476447 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 289 |
| Conread position: | 1-558 |
| Cow position: | chr21:2717141-2716618 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 87 |
| Conread position: | 1-558 |
| Cow position: | chr21:4090132-4090714 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 492 |
| Conread position: | 1-558 |
| Cow position: | chr21:26638971-26638400 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 39 |
| Conread position: | 1-558 |
| Cow position: | chr21:34259686-34259156 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 112 |
| Conread position: | 1-562 |
| Cow position: | chr21:37044408-37044980 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 237 |
| Conread position: | 1-564 |
| Cow position: | chr21:2415746-2416305 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 201 |
| Conread position: | 1-564 |
| Cow position: | chr21:2510141-2510721 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 288 |
| Conread position: | 1-564 |
| Cow position: | chr21:4076387-4076914 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 165 |
| Conread position: | 1-564 |
| Cow position: | chr21:11505072-11505656 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 61 |
| Conread position: | 1-564 |
| Cow position: | chr21:12056507-12055931 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 233 |
| Conread position: | 1-564 |
| Cow position: | chr21:17572413-17572990 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 289 |
| Conread position: | 1-564 |
| Cow position: | chr21:21948290-21947733 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 358 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 123, 73 |
| Conread position: | 1-564 |
| Cow position: | chr21:26819529-26818952 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 25 |
| Conread position: | 1-564 |
| Cow position: | chr21:27708245-27708831 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 289 |
| Conread position: | 1-564 |
| Cow position: | chr21:28530059-28529475 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 289 |
| Conread position: | 1-564 |
| Cow position: | chr21:33250908-33251461 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 175 |
| Conread position: | 1-564 |
| Cow position: | chr21:35595906-35596437 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 121 |
| Conread position: | 1-564 |
| Cow position: | chr21:47947601-47948178 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 243 |
| Conread position: | 3-184 |
| Cow position: | chr21:18820586-18820402 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 3-543 |
| Cow position: | chr21:40272295-40271772 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 166 |
| Conread position: | 3-564 |
| Cow position: | chr21:10566197-10566743 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 170 |
| Conread position: | 4-428 |
| Cow position: | chr21:4590450-4590031 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 260 |
| Conread position: | 4-563 |
| Cow position: | chr21:358542-359084 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 69 |
| Conread position: | 4-564 |
| Cow position: | chr21:1190560-1191117 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 115 |
| Conread position: | 5-558 |
| Cow position: | chr21:7268016-7267479 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 25 |
| Conread position: | 7-564 |
| Cow position: | chr21:3778295-3778835 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 158 |
| Conread position: | 8-564 |
| Cow position: | chr21:46915082-46915656 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 272 |
| Conread position: | 12-556 |
| Cow position: | chr21:33754830-33755369 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 357 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 112, 59 |
| Conread position: | 13-463 |
| Cow position: | chr21:2884208-2883764 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 135 |
| Conread position: | 13-558 |
| Cow position: | chr21:1292653-1292114 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 154 |
| Conread position: | 13-564 |
| Cow position: | chr21:31560119-31559585 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 160 |
| Conread position: | 17-564 |
| Cow position: | chr21:145456-145988 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 77 |
| Conread position: | 18-564 |
| Cow position: | chr21:2769925-2769392 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 140 |
| Conread position: | 25-563 |
| Cow position: | chr21:10849620-10850148 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 148 |
| Conread position: | 26-409 |
| Cow position: | chr21:39580230-39580638 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 59, 264 |
| Conread position: | 40-564 |
| Cow position: | chr21:4183079-4183593 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 188 |
| Conread position: | 46-564 |
| Cow position: | chr21:48115668-48116178 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 121 |
| Conread position: | 50-557 |
| Cow position: | chr21:2501501-2501992 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 115 |
| Conread position: | 53-391 |
| Cow position: | chr21:41952746-41953080 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 106 |
| Conread position: | 153-564 |
| Cow position: | chr21:11453994-11453587 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 268 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 141, 113 |
| Conread position: | 160-564 |
| Cow position: | chr21:39424735-39425132 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 64, 94 |
| Conread position: | 182-564 |
| Cow position: | chr21:2789293-2788922 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 35 |
| Conread position: | 197-564 |
| Cow position: | chr21:3426180-3426554 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 264 |
| Conread position: | 204-542 |
| Cow position: | chr21:30600203-30599873 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 238 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 92, 61 |
| Conread position: | 235-564 |
| Cow position: | chr21:2530385-2530058 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 31 |
| Conread position: | 237-563 |
| Cow position: | chr21:2674896-2674560 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 317 |
| Conread position: | 241-558 |
| Cow position: | chr21:34292764-34293082 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 209 |
| Conread position: | 243-530 |
| Cow position: | chr21:6699816-6699521 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 21, 146 |
| Conread position: | 243-558 |
| Cow position: | chr21:4083404-4083709 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 67, 23 |
| Conread position: | 250-536 |
| Cow position: | chr21:9891367-9891644 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 44, 74 |
| Conread position: | 255-563 |
| Cow position: | chr21:21516967-21517271 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 12, 92 |
| Conread position: | 258-399 |
| Cow position: | chr21:23811675-23811816 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 59, 32 |
| Conread position: | 258-564 |
| Cow position: | chr21:4222933-4222618 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 218 |
| Conread position: | 258-564 |
| Cow position: | chr21:13124234-13123930 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 43 |
| Conread position: | 261-564 |
| Cow position: | chr21:3615060-3615361 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 10 |
| Conread position: | 271-564 |
| Cow position: | chr21:30561577-30561871 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 198 |
| Conread position: | 357-564 |
| Cow position: | chr21:2541552-2541344 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 10, 110 |
| Conread position: | 372-536 |
| Cow position: | chr21:27633-27790 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 388-563 |
| Cow position: | chr21:36714528-36714701 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 115, 51 |
| Conread position: | 392-563 |
| Cow position: | chr21:4456729-4456895 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 20, 0 |
Show alignments to all cow chromosomes.