Cow genome map

Conread name: raor023_p21.y1

Conread position: 1-161
Cow position: chr22:11029998-11030154 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 1-207
Cow position: chr22:10077377-10077168 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 145
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 86, 126

Conread position: 1-207
Cow position: chr22:36272854-36273057 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 139
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 180, 0

Conread position: 1-211
Cow position: chr22:44353803-44353591 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 155
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 88, 198

Conread position: 1-246
Cow position: chr22:1318772-1319017 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 164
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 182, 208

Conread position: 1-378
Cow position: chr22:40380561-40380910 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 263
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 86, 166

Conread position: 1-409
Cow position: chr22:6020147-6020569 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 241
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 96, 196

Conread position: 1-499
Cow position: chr22:36534612-36534132 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 247

Conread position: 1-500
Cow position: chr22:5307427-5307950 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 280

Conread position: 1-506
Cow position: chr22:42770915-42771388 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 24

Conread position: 1-558
Cow position: chr22:8136849-8136306 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 22

Conread position: 1-558
Cow position: chr22:44370303-44369730 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 289

Conread position: 1-562
Cow position: chr22:327833-327262 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 93

Conread position: 1-562
Cow position: chr22:1285592-1285037 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 81

Conread position: 1-563
Cow position: chr22:37264767-37265349 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 237

Conread position: 1-564
Cow position: chr22:692953-693528 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 112

Conread position: 1-564
Cow position: chr22:1878148-1878688 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 102

Conread position: 1-564
Cow position: chr22:3279038-3278457 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 112

Conread position: 1-564
Cow position: chr22:3307377-3306836 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 28

Conread position: 1-564
Cow position: chr22:5233986-5233409 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 274

Conread position: 1-564
Cow position: chr22:5672105-5672633 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 117

Conread position: 1-564
Cow position: chr22:6984565-6985151 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 240

Conread position: 1-564
Cow position: chr22:7276867-7277420 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 76

Conread position: 1-564
Cow position: chr22:10545961-10546541 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 289

Conread position: 1-564
Cow position: chr22:10910544-10909961 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 292

Conread position: 1-564
Cow position: chr22:16199812-16200382 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 76

Conread position: 1-564
Cow position: chr22:18476450-18475870 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 190

Conread position: 1-564
Cow position: chr22:27310466-27309877 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 219

Conread position: 1-564
Cow position: chr22:35673045-35672459 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 289

Conread position: 1-564
Cow position: chr22:39882815-39882280 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 83

Conread position: 3-564
Cow position: chr22:1320963-1321508 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 149

Conread position: 3-564
Cow position: chr22:44489208-44489783 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 275

Conread position: 4-564
Cow position: chr22:42990524-42991068 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 21

Conread position: 5-199
Cow position: chr22:46636641-46636445 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 84, 194

Conread position: 7-553
Cow position: chr22:1046735-1047262 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 352
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 79, 159

Conread position: 7-562
Cow position: chr22:33350527-33351063 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 368
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 22, 82

Conread position: 7-564
Cow position: chr22:309088-309612 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 369
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 78, 108

Conread position: 7-564
Cow position: chr22:5933650-5933088 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 71

Conread position: 8-564
Cow position: chr22:24949147-24949726 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 282

Conread position: 13-555
Cow position: chr22:46585964-46585424 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 137

Conread position: 13-564
Cow position: chr22:15850680-15851231 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 24

Conread position: 13-564
Cow position: chr22:31312700-31313237 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 153

Conread position: 13-564
Cow position: chr22:34167678-34168228 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 15

Conread position: 16-526
Cow position: chr22:21588697-21589192 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 157

Conread position: 16-558
Cow position: chr22:44456671-44457206 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 89

Conread position: 16-563
Cow position: chr22:39470158-39469624 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 157

Conread position: 16-564
Cow position: chr22:19144339-19143803 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 157

Conread position: 17-558
Cow position: chr22:13772142-13772671 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 254

Conread position: 18-524
Cow position: chr22:37073795-37073319 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 5

Conread position: 18-564
Cow position: chr22:44933340-44933876 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 125

Conread position: 19-456
Cow position: chr22:526549-526119 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 155

Conread position: 19-564
Cow position: chr22:1294139-1293600 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 207

Conread position: 20-400
Cow position: chr22:36180495-36180879 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 263
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 9, 58

Conread position: 25-343
Cow position: chr22:27387023-27386709 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 219
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 64, 117

Conread position: 25-564
Cow position: chr22:561331-560809 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 127

Conread position: 25-564
Cow position: chr22:17329369-17328843 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 116

Conread position: 28-530
Cow position: chr22:45880743-45880262 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 20

Conread position: 34-363
Cow position: chr22:44609008-44609339 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 232
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 53, 189

Conread position: 34-564
Cow position: chr22:36736157-36736659 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 178

Conread position: 84-558
Cow position: chr22:37131086-37131540 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 113

Conread position: 95-307
Cow position: chr22:48004099-48004308 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 187, 9

Conread position: 105-564
Cow position: chr22:1271058-1270614 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 100

Conread position: 105-564
Cow position: chr22:6504209-6503768 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 115

Conread position: 121-429
Cow position: chr22:12732601-12732308 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 223
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 80, 69

Conread position: 131-564
Cow position: chr22:118356-117919 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 16

Conread position: 154-564
Cow position: chr22:11030477-11030856 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 280
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 24, 0

Conread position: 183-559
Cow position: chr22:9657840-9658213 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 244
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 126, 161

Conread position: 191-564
Cow position: chr22:31335506-31335137 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 38

Conread position: 191-564
Cow position: chr22:46636173-46635803 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 5

Conread position: 205-564
Cow position: chr22:44395321-44395677 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 57

Conread position: 213-543
Cow position: chr22:44353401-44353072 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 43

Conread position: 223-501
Cow position: chr22:41420128-41419855 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 200
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 71, 43

Conread position: 250-564
Cow position: chr22:36861949-36861634 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 219

Conread position: 257-556
Cow position: chr22:10077158-10076864 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 60, 30

Conread position: 257-558
Cow position: chr22:41474740-41474446 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 204
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 37, 87

Conread position: 257-564
Cow position: chr22:18816793-18816485 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 215
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 35, 150

Conread position: 258-543
Cow position: chr22:37067319-37067039 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 206
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 36, 48

Conread position: 258-564
Cow position: chr22:1318984-1319293 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 211

Conread position: 258-564
Cow position: chr22:46852932-46853238 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 219
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 36, 187

Conread position: 271-564
Cow position: chr22:158312-158006 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 269

Conread position: 278-564
Cow position: chr22:32485718-32485441 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 74

Conread position: 295-564
Cow position: chr22:4065269-4065537 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 192
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 25, 57

Conread position: 322-555
Cow position: chr22:36267033-36267257 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 162
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 92, 133

Conread position: 351-559
Cow position: chr22:34598361-34598566 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 20, 61

Conread position: 392-564
Cow position: chr22:27283776-27283945 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 395-563
Cow position: chr22:36183488-36183654 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 28, 0

Conread position: 399-564
Cow position: chr22:27386698-27386535 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 116
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 420-564
Cow position: chr22:36274560-36274706 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 35, 0

Show alignments to all cow chromosomes.