Cow genome map
| Conread name: | raor023_p21.y1 |
| Conread position: | 1-162 |
| Cow position: | chr23:7269928-7270090 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 86, 106 |
| Conread position: | 1-169 |
| Cow position: | chr23:31707314-31707485 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 1-205 |
| Cow position: | chr23:810472-810677 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 85, 107 |
| Conread position: | 1-383 |
| Cow position: | chr23:2045378-2045748 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 272 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 45, 109 |
| Conread position: | 1-456 |
| Cow position: | chr23:14975451-14974978 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 290 |
| Conread position: | 1-536 |
| Cow position: | chr23:22147935-22147389 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 155 |
| Conread position: | 1-560 |
| Cow position: | chr23:31595826-31595285 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 231 |
| Conread position: | 1-563 |
| Cow position: | chr23:989284-988745 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 25 |
| Conread position: | 1-564 |
| Cow position: | chr23:3012984-3013542 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 247 |
| Conread position: | 1-564 |
| Cow position: | chr23:5875405-5874878 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 102 |
| Conread position: | 1-564 |
| Cow position: | chr23:19449370-19449919 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 361 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 202, 62 |
| Conread position: | 1-564 |
| Cow position: | chr23:19951271-19950687 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 286 |
| Conread position: | 1-564 |
| Cow position: | chr23:20301523-20302111 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 56 |
| Conread position: | 1-564 |
| Cow position: | chr23:28216604-28217187 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 263 |
| Conread position: | 1-564 |
| Cow position: | chr23:34174542-34175079 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 368 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 28, 56 |
| Conread position: | 3-558 |
| Cow position: | chr23:4509444-4509991 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 7 |
| Conread position: | 3-564 |
| Cow position: | chr23:16617487-16616952 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 6 |
| Conread position: | 4-536 |
| Cow position: | chr23:1140907-1141425 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 76 |
| Conread position: | 5-559 |
| Cow position: | chr23:19333058-19332507 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 351 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 7, 110 |
| Conread position: | 7-564 |
| Cow position: | chr23:2339757-2340299 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 100 |
| Conread position: | 9-563 |
| Cow position: | chr23:1025701-1025165 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 48 |
| Conread position: | 9-563 |
| Cow position: | chr23:15176406-15176970 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 201 |
| Conread position: | 11-558 |
| Cow position: | chr23:36032017-36031481 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 163 |
| Conread position: | 13-403 |
| Cow position: | chr23:2756860-2757239 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 137, 12 |
| Conread position: | 13-453 |
| Cow position: | chr23:14966630-14966185 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 19, 38 |
| Conread position: | 13-564 |
| Cow position: | chr23:2796200-2795669 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 96 |
| Conread position: | 13-564 |
| Cow position: | chr23:3882336-3881802 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 151 |
| Conread position: | 15-564 |
| Cow position: | chr23:4641262-4640728 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 158 |
| Conread position: | 16-260 |
| Cow position: | chr23:2573637-2573884 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 71, 10 |
| Conread position: | 16-558 |
| Cow position: | chr23:28912772-28913304 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 16-564 |
| Cow position: | chr23:2027763-2027222 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 21 |
| Conread position: | 16-564 |
| Cow position: | chr23:11777847-11778383 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 105 |
| Conread position: | 16-564 |
| Cow position: | chr23:15524982-15525506 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 122 |
| Conread position: | 16-564 |
| Cow position: | chr23:19488891-19489434 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 89 |
| Conread position: | 17-564 |
| Cow position: | chr23:4815443-4815969 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 76 |
| Conread position: | 20-564 |
| Cow position: | chr23:27398869-27399400 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 153 |
| Conread position: | 28-558 |
| Cow position: | chr23:15220524-15220005 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 141 |
| Conread position: | 37-564 |
| Cow position: | chr23:4359187-4359726 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 201 |
| Conread position: | 45-564 |
| Cow position: | chr23:4276357-4276851 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 11 |
| Conread position: | 46-550 |
| Cow position: | chr23:2715727-2716236 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 220 |
| Conread position: | 53-238 |
| Cow position: | chr23:8981412-8981227 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 34, 152 |
| Conread position: | 147-562 |
| Cow position: | chr23:22876144-22875740 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 39 |
| Conread position: | 171-558 |
| Cow position: | chr23:4433981-4434355 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 25 |
| Conread position: | 213-549 |
| Cow position: | chr23:7273208-7273536 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 42 |
| Conread position: | 223-564 |
| Cow position: | chr23:31446368-31446711 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 212 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 60, 132 |
| Conread position: | 239-564 |
| Cow position: | chr23:1330713-1330393 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 27 |
| Conread position: | 258-558 |
| Cow position: | chr23:2765778-2765488 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 123 |
| Conread position: | 258-558 |
| Cow position: | chr23:5779496-5779194 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 212 |
| Conread position: | 258-558 |
| Cow position: | chr23:16481761-16481462 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 130 |
| Conread position: | 258-564 |
| Cow position: | chr23:967758-967449 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 208 |
| Conread position: | 258-564 |
| Cow position: | chr23:2574155-2574461 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 211 |
| Conread position: | 267-564 |
| Cow position: | chr23:30636703-30636405 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 202 |
| Conread position: | 293-445 |
| Cow position: | chr23:6469648-6469495 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 299-562 |
| Cow position: | chr23:8980856-8980598 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 149 |
| Conread position: | 309-558 |
| Cow position: | chr23:2725505-2725747 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 8, 53 |
| Conread position: | 333-564 |
| Cow position: | chr23:2313570-2313341 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 354-564 |
| Cow position: | chr23:16616173-16615972 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 380-564 |
| Cow position: | chr23:4751729-4751910 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 388-563 |
| Cow position: | chr23:4888403-4888576 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 78, 0 |
Show alignments to all cow chromosomes.