Cow genome map
| Conread name: | raor023_p21.y1 |
| Conread position: | 1-169 |
| Cow position: | chr24:6083399-6083565 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 1-169 |
| Cow position: | chr24:10657450-10657621 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 1-180 |
| Cow position: | chr24:12209139-12208959 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 104, 137 |
| Conread position: | 1-207 |
| Cow position: | chr24:29306425-29306218 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 84, 20 |
| Conread position: | 1-214 |
| Cow position: | chr24:36707058-36707269 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 86, 104 |
| Conread position: | 1-224 |
| Cow position: | chr24:37301619-37301405 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 86, 164 |
| Conread position: | 1-246 |
| Cow position: | chr24:35839168-35838919 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 203 |
| Conread position: | 1-261 |
| Cow position: | chr24:36560808-36560542 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 86, 45 |
| Conread position: | 1-357 |
| Cow position: | chr24:11157192-11156865 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 88, 166 |
| Conread position: | 1-429 |
| Cow position: | chr24:7712895-7712449 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 258 |
| Conread position: | 1-490 |
| Cow position: | chr24:5993568-5993069 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 283 |
| Conread position: | 1-500 |
| Cow position: | chr24:12225059-12224562 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 330 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 84, 186 |
| Conread position: | 1-500 |
| Cow position: | chr24:37216148-37216651 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 222 |
| Conread position: | 1-532 |
| Cow position: | chr24:32126056-32125562 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 354 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 96, 24 |
| Conread position: | 1-551 |
| Cow position: | chr24:12289293-12288758 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 158 |
| Conread position: | 1-558 |
| Cow position: | chr24:1447006-1447536 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 361 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 42, 135 |
| Conread position: | 1-558 |
| Cow position: | chr24:6644814-6645391 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 219 |
| Conread position: | 1-562 |
| Cow position: | chr24:12236481-12237034 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 231 |
| Conread position: | 1-564 |
| Cow position: | chr24:6025700-6025113 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 289 |
| Conread position: | 1-564 |
| Cow position: | chr24:6144789-6145342 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 166 |
| Conread position: | 1-564 |
| Cow position: | chr24:6433634-6434223 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 258 |
| Conread position: | 1-564 |
| Cow position: | chr24:9189332-9188749 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 287 |
| Conread position: | 1-564 |
| Cow position: | chr24:12798328-12797782 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 54 |
| Conread position: | 1-564 |
| Cow position: | chr24:13021100-13021650 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 170 |
| Conread position: | 1-564 |
| Cow position: | chr24:16649885-16649318 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 119 |
| Conread position: | 1-564 |
| Cow position: | chr24:22792570-22793156 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 488 |
| Conread position: | 1-564 |
| Cow position: | chr24:33739946-33739362 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 290 |
| Conread position: | 1-564 |
| Cow position: | chr24:35842161-35841635 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 372 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 74, 84 |
| Conread position: | 3-420 |
| Cow position: | chr24:14583545-14583937 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 71, 81 |
| Conread position: | 3-562 |
| Cow position: | chr24:12567665-12568229 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 367 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 83, 40 |
| Conread position: | 3-564 |
| Cow position: | chr24:13532090-13531554 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 111 |
| Conread position: | 3-564 |
| Cow position: | chr24:15392879-15392327 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 249 |
| Conread position: | 8-409 |
| Cow position: | chr24:149155-148763 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 160 |
| Conread position: | 9-308 |
| Cow position: | chr24:9544268-9544554 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 81, 158 |
| Conread position: | 11-564 |
| Cow position: | chr24:6351635-6352178 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 17 |
| Conread position: | 13-564 |
| Cow position: | chr24:12161320-12161861 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 160 |
| Conread position: | 13-564 |
| Cow position: | chr24:33932791-33933348 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 73 |
| Conread position: | 15-556 |
| Cow position: | chr24:12132039-12131510 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 321 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 74, 137 |
| Conread position: | 16-414 |
| Cow position: | chr24:17314872-17314479 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 64 |
| Conread position: | 16-440 |
| Cow position: | chr24:29186249-29186666 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 16-564 |
| Cow position: | chr24:14385165-14384631 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 99 |
| Conread position: | 16-564 |
| Cow position: | chr24:19832829-19833363 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 136 |
| Conread position: | 26-541 |
| Cow position: | chr24:17187018-17187505 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 28-564 |
| Cow position: | chr24:4416071-4415543 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 147 |
| Conread position: | 28-564 |
| Cow position: | chr24:6335143-6335677 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 132 |
| Conread position: | 31-558 |
| Cow position: | chr24:39677897-39678407 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 134 |
| Conread position: | 34-564 |
| Cow position: | chr24:14391264-14390747 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 102 |
| Conread position: | 73-564 |
| Cow position: | chr24:44017016-44017528 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 215 |
| Conread position: | 143-500 |
| Cow position: | chr24:20267778-20268136 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 125 |
| Conread position: | 150-564 |
| Cow position: | chr24:7060681-7061083 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 98 |
| Conread position: | 150-564 |
| Cow position: | chr24:16085104-16084678 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 133, 18 |
| Conread position: | 157-564 |
| Cow position: | chr24:6083593-6083999 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 110 |
| Conread position: | 158-558 |
| Cow position: | chr24:12114452-12114063 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 164-540 |
| Cow position: | chr24:12207729-12208098 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 247 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 130, 33 |
| Conread position: | 182-563 |
| Cow position: | chr24:13181730-13181369 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 260 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 112, 38 |
| Conread position: | 185-563 |
| Cow position: | chr24:36296772-36297141 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 80, 165 |
| Conread position: | 190-457 |
| Cow position: | chr24:35991038-35990778 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 127, 22 |
| Conread position: | 203-564 |
| Cow position: | chr24:12085826-12086180 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 32 |
| Conread position: | 204-564 |
| Cow position: | chr24:36707484-36707832 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 121, 58 |
| Conread position: | 205-564 |
| Cow position: | chr24:14873723-14873360 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 21, 267 |
| Conread position: | 241-564 |
| Cow position: | chr24:35838970-35838643 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 65 |
| Conread position: | 251-564 |
| Cow position: | chr24:36560403-36560101 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 43, 116 |
| Conread position: | 258-563 |
| Cow position: | chr24:13187870-13188166 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 36, 89 |
| Conread position: | 258-564 |
| Cow position: | chr24:12485642-12485335 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 214 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 36, 211 |
| Conread position: | 261-501 |
| Cow position: | chr24:37301395-37301162 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 189 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 33, 107 |
| Conread position: | 319-564 |
| Cow position: | chr24:2635859-2636102 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 42, 32 |
| Conread position: | 319-564 |
| Cow position: | chr24:8029890-8030133 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 412-564 |
| Cow position: | chr24:14584927-14585075 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 14, 0 |
Show alignments to all cow chromosomes.