Cow genome map
| Conread name: | raor023_p21.y1 |
| Conread position: | 1-162 |
| Cow position: | chr28:9953552-9953716 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 1-238 |
| Cow position: | chr28:4382002-4381757 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 45, 53 |
| Conread position: | 1-260 |
| Cow position: | chr28:6663646-6663908 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 84, 198 |
| Conread position: | 1-285 |
| Cow position: | chr28:7820843-7821131 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 88, 172 |
| Conread position: | 1-386 |
| Cow position: | chr28:24666997-24667379 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 124 |
| Conread position: | 1-403 |
| Cow position: | chr28:2990582-2990184 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 226 |
| Conread position: | 1-415 |
| Cow position: | chr28:488845-489284 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 300 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 84, 240 |
| Conread position: | 1-464 |
| Cow position: | chr28:6657948-6657501 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 302 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 83, 147 |
| Conread position: | 1-521 |
| Cow position: | chr28:6780968-6780431 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 270 |
| Conread position: | 1-536 |
| Cow position: | chr28:21358403-21358927 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 224 |
| Conread position: | 1-556 |
| Cow position: | chr28:15681302-15681822 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 166 |
| Conread position: | 1-558 |
| Cow position: | chr28:5812094-5812644 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 34 |
| Conread position: | 1-559 |
| Cow position: | chr28:1388002-1387459 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 42 |
| Conread position: | 1-559 |
| Cow position: | chr28:34648338-34648879 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 369 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 86, 112 |
| Conread position: | 1-562 |
| Cow position: | chr28:13441522-13440938 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 289 |
| Conread position: | 1-564 |
| Cow position: | chr28:1952494-1953071 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 278 |
| Conread position: | 1-564 |
| Cow position: | chr28:5796206-5796756 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 222 |
| Conread position: | 1-564 |
| Cow position: | chr28:8722075-8721508 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 208 |
| Conread position: | 1-564 |
| Cow position: | chr28:15950336-15950922 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 289 |
| Conread position: | 1-564 |
| Cow position: | chr28:21325172-21325730 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 230 |
| Conread position: | 1-564 |
| Cow position: | chr28:22827446-22827992 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 66 |
| Conread position: | 3-424 |
| Cow position: | chr28:7790844-7790436 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 81 |
| Conread position: | 3-558 |
| Cow position: | chr28:2591334-2591851 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 156 |
| Conread position: | 4-564 |
| Cow position: | chr28:3193384-3192850 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 9 |
| Conread position: | 4-564 |
| Cow position: | chr28:26426869-26426333 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 161 |
| Conread position: | 5-562 |
| Cow position: | chr28:10619716-10619171 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 244 |
| Conread position: | 6-553 |
| Cow position: | chr28:7816638-7817153 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 17 |
| Conread position: | 13-397 |
| Cow position: | chr28:15036016-15035640 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 76, 135 |
| Conread position: | 13-403 |
| Cow position: | chr28:5752760-5752378 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 170 |
| Conread position: | 13-556 |
| Cow position: | chr28:13522138-13522660 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 73 |
| Conread position: | 13-558 |
| Cow position: | chr28:13459374-13459906 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 129 |
| Conread position: | 13-562 |
| Cow position: | chr28:781797-782334 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 160 |
| Conread position: | 13-564 |
| Cow position: | chr28:34593245-34593780 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 114 |
| Conread position: | 16-398 |
| Cow position: | chr28:1504044-1504418 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 262 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 16-406 |
| Cow position: | chr28:33251722-33252129 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 255 |
| Conread position: | 16-457 |
| Cow position: | chr28:5115669-5115243 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 126 |
| Conread position: | 16-558 |
| Cow position: | chr28:29818976-29819505 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 114 |
| Conread position: | 16-564 |
| Cow position: | chr28:5565264-5565803 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 157 |
| Conread position: | 16-564 |
| Cow position: | chr28:8377966-8378505 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 160 |
| Conread position: | 16-564 |
| Cow position: | chr28:10582578-10582045 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 132 |
| Conread position: | 16-564 |
| Cow position: | chr28:14706264-14705731 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 147 |
| Conread position: | 16-564 |
| Cow position: | chr28:17668109-17667573 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 130 |
| Conread position: | 16-564 |
| Cow position: | chr28:18521063-18520520 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 141 |
| Conread position: | 18-558 |
| Cow position: | chr28:1168759-1168230 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 155 |
| Conread position: | 18-558 |
| Cow position: | chr28:12149734-12150247 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 149 |
| Conread position: | 22-494 |
| Cow position: | chr28:26007445-26007900 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 52 |
| Conread position: | 25-558 |
| Cow position: | chr28:2083016-2083539 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 148 |
| Conread position: | 26-564 |
| Cow position: | chr28:14749959-14750489 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 8 |
| Conread position: | 28-564 |
| Cow position: | chr28:22261734-22261210 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 86 |
| Conread position: | 46-391 |
| Cow position: | chr28:15378581-15378244 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 43, 127 |
| Conread position: | 46-558 |
| Cow position: | chr28:32792940-32792444 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 43 |
| Conread position: | 46-564 |
| Cow position: | chr28:7001436-7001929 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 32 |
| Conread position: | 46-564 |
| Cow position: | chr28:17387914-17388422 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 93 |
| Conread position: | 90-403 |
| Cow position: | chr28:7739734-7740037 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 204, 74 |
| Conread position: | 182-564 |
| Cow position: | chr28:15920899-15920525 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 256 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 111, 73 |
| Conread position: | 253-564 |
| Cow position: | chr28:32331769-32331466 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 64, 40 |
| Conread position: | 258-403 |
| Cow position: | chr28:9137394-9137246 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 36, 127 |
| Conread position: | 258-558 |
| Cow position: | chr28:9155645-9155350 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 39 |
| Conread position: | 258-563 |
| Cow position: | chr28:9953769-9954076 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 204 |
| Conread position: | 258-564 |
| Cow position: | chr28:17330898-17330586 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 36, 187 |
| Conread position: | 265-558 |
| Cow position: | chr28:7901000-7901286 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 105 |
| Conread position: | 268-564 |
| Cow position: | chr28:1815223-1814927 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 173 |
| Conread position: | 274-564 |
| Cow position: | chr28:7821915-7822198 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 20, 73 |
| Conread position: | 293-564 |
| Cow position: | chr28:24587107-24587374 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 11, 56 |
| Conread position: | 322-543 |
| Cow position: | chr28:4381108-4380900 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 323-530 |
| Cow position: | chr28:14491167-14491365 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 387-564 |
| Cow position: | chr28:24652057-24652232 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 391-563 |
| Cow position: | chr28:2846723-2846559 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 393-564 |
| Cow position: | chr28:5752105-5751935 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 144, 73 |
| Conread position: | 394-564 |
| Cow position: | chr28:2989909-2989748 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 71, 0 |
Show alignments to all cow chromosomes.