Cow genome map

Conread name: raor023_p21.y1

Conread position: 1-139
Cow position: chr29:43366834-43366692 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 86, 0

Conread position: 1-146
Cow position: chr29:32560733-32560585 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 109
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 84, 0

Conread position: 1-168
Cow position: chr29:19884573-19884743 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 84, 0

Conread position: 1-204
Cow position: chr29:9644797-9644602 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 88, 46

Conread position: 1-217
Cow position: chr29:22318593-22318374 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 86, 0

Conread position: 1-238
Cow position: chr29:10848742-10848501 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 174
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 73, 0

Conread position: 1-246
Cow position: chr29:34622699-34622454 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 169
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 104, 83

Conread position: 1-343
Cow position: chr29:42649714-42650051 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 239
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 88, 29

Conread position: 1-343
Cow position: chr29:42801574-42801911 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 240
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 88, 29

Conread position: 1-378
Cow position: chr29:21431999-21431618 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 111

Conread position: 1-401
Cow position: chr29:18857465-18857040 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 247
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 84, 198

Conread position: 1-458
Cow position: chr29:34752318-34751890 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 308
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 301, 86

Conread position: 1-524
Cow position: chr29:32890563-32891078 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 351
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 80, 137

Conread position: 1-558
Cow position: chr29:49121-48575 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 8

Conread position: 1-562
Cow position: chr29:16109049-16109633 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 290

Conread position: 1-563
Cow position: chr29:11048645-11049188 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 89

Conread position: 1-563
Cow position: chr29:13577749-13578324 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 288

Conread position: 1-563
Cow position: chr29:35196061-35196579 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 167

Conread position: 1-564
Cow position: chr29:103937-104480 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 184

Conread position: 1-564
Cow position: chr29:611289-610705 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 94

Conread position: 1-564
Cow position: chr29:2751029-2750487 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 208

Conread position: 1-564
Cow position: chr29:15969818-15969244 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 112

Conread position: 1-564
Cow position: chr29:16769509-16770035 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 162

Conread position: 1-564
Cow position: chr29:27041393-27040857 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 89

Conread position: 1-564
Cow position: chr29:27251011-27250428 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 190

Conread position: 1-564
Cow position: chr29:31121115-31121712 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 395
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 87, 349

Conread position: 1-564
Cow position: chr29:32315361-32315947 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 276

Conread position: 1-564
Cow position: chr29:35296222-35296781 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 195

Conread position: 1-564
Cow position: chr29:43321902-43322466 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 131

Conread position: 4-555
Cow position: chr29:16021884-16022427 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 175

Conread position: 4-564
Cow position: chr29:30810918-30811438 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 38

Conread position: 4-564
Cow position: chr29:39080350-39079799 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 145

Conread position: 8-564
Cow position: chr29:15895518-15894944 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 234

Conread position: 9-490
Cow position: chr29:45587937-45587466 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 165

Conread position: 9-564
Cow position: chr29:25933183-25932638 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 143

Conread position: 13-564
Cow position: chr29:5956956-5957509 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 40

Conread position: 13-564
Cow position: chr29:10824591-10824049 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 161

Conread position: 13-564
Cow position: chr29:19623878-19623340 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 103

Conread position: 13-564
Cow position: chr29:19652474-19653015 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 160

Conread position: 16-564
Cow position: chr29:2099215-2099751 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 151

Conread position: 16-564
Cow position: chr29:6267124-6266588 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 149

Conread position: 16-564
Cow position: chr29:7431847-7431309 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 157

Conread position: 16-564
Cow position: chr29:20250528-20251066 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 157

Conread position: 16-564
Cow position: chr29:26165449-26164916 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 157

Conread position: 16-564
Cow position: chr29:38226363-38226908 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 158

Conread position: 16-564
Cow position: chr29:40503610-40503072 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 157

Conread position: 16-564
Cow position: chr29:45459093-45459622 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 151

Conread position: 23-564
Cow position: chr29:10848759-10848202 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 7

Conread position: 28-536
Cow position: chr29:10648864-10648369 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 145

Conread position: 28-564
Cow position: chr29:34800410-34799903 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 110

Conread position: 40-564
Cow position: chr29:21543963-21543458 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 61

Conread position: 46-564
Cow position: chr29:23975232-23975743 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 129

Conread position: 46-564
Cow position: chr29:32539210-32539717 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 121

Conread position: 54-363
Cow position: chr29:8663681-8663985 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 92

Conread position: 110-564
Cow position: chr29:2841899-2841462 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 54

Conread position: 143-564
Cow position: chr29:28061181-28060759 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 125

Conread position: 173-463
Cow position: chr29:14368463-14368755 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 196
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 121, 83

Conread position: 176-540
Cow position: chr29:6470967-6471301 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 242
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 141, 5

Conread position: 184-558
Cow position: chr29:803801-803425 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 256
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 116, 45

Conread position: 193-543
Cow position: chr29:9644184-9643838 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 63

Conread position: 256-564
Cow position: chr29:7840396-7840703 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 218
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 38, 116

Conread position: 258-530
Cow position: chr29:2468340-2468057 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 196
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 36, 0

Conread position: 258-558
Cow position: chr29:43366391-43366096 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 29

Conread position: 258-564
Cow position: chr29:12796863-12796559 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 146

Conread position: 269-558
Cow position: chr29:2689517-2689804 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 209
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 25, 81

Conread position: 328-564
Cow position: chr29:31180803-31181030 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 172
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 16, 0

Conread position: 349-556
Cow position: chr29:13853327-13853123 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 161
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 20, 71

Conread position: 354-564
Cow position: chr29:21427355-21427148 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 159
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 11, 0

Conread position: 395-564
Cow position: chr29:17662661-17662830 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 125, 107

Show alignments to all cow chromosomes.