Cow genome map
Conread name: | raor023_p21.y1 |
Conread position: | 1-139 |
Cow position: | chr29:43366834-43366692 (view UCSC Genome Browser custom track) |
Alignm length: | 143 |
Alignm identity: | 107 |
Alignm E-value: | 8e-22 |
Alignm gaps (pig, cow): | 86, 0 |
Conread position: | 1-146 |
Cow position: | chr29:32560733-32560585 (view UCSC Genome Browser custom track) |
Alignm length: | 149 |
Alignm identity: | 109 |
Alignm E-value: | 8e-22 |
Alignm gaps (pig, cow): | 84, 0 |
Conread position: | 1-168 |
Cow position: | chr29:19884573-19884743 (view UCSC Genome Browser custom track) |
Alignm length: | 171 |
Alignm identity: | 125 |
Alignm E-value: | 4e-26 |
Alignm gaps (pig, cow): | 84, 0 |
Conread position: | 1-204 |
Cow position: | chr29:9644797-9644602 (view UCSC Genome Browser custom track) |
Alignm length: | 207 |
Alignm identity: | 147 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 88, 46 |
Conread position: | 1-217 |
Cow position: | chr29:22318593-22318374 (view UCSC Genome Browser custom track) |
Alignm length: | 220 |
Alignm identity: | 157 |
Alignm E-value: | 9e-34 |
Alignm gaps (pig, cow): | 86, 0 |
Conread position: | 1-238 |
Cow position: | chr29:10848742-10848501 (view UCSC Genome Browser custom track) |
Alignm length: | 242 |
Alignm identity: | 174 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 73, 0 |
Conread position: | 1-246 |
Cow position: | chr29:34622699-34622454 (view UCSC Genome Browser custom track) |
Alignm length: | 252 |
Alignm identity: | 169 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 104, 83 |
Conread position: | 1-343 |
Cow position: | chr29:42649714-42650051 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 239 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 88, 29 |
Conread position: | 1-343 |
Cow position: | chr29:42801574-42801911 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 240 |
Alignm E-value: | 1.99993e-41 |
Alignm gaps (pig, cow): | 88, 29 |
Conread position: | 1-378 |
Cow position: | chr29:21431999-21431618 (view UCSC Genome Browser custom track) |
Alignm length: | 386 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 88, 111 |
Conread position: | 1-401 |
Cow position: | chr29:18857465-18857040 (view UCSC Genome Browser custom track) |
Alignm length: | 427 |
Alignm identity: | 247 |
Alignm E-value: | 4e-25 |
Alignm gaps (pig, cow): | 84, 198 |
Conread position: | 1-458 |
Cow position: | chr29:34752318-34751890 (view UCSC Genome Browser custom track) |
Alignm length: | 461 |
Alignm identity: | 308 |
Alignm E-value: | 1.99993e-41 |
Alignm gaps (pig, cow): | 301, 86 |
Conread position: | 1-524 |
Cow position: | chr29:32890563-32891078 (view UCSC Genome Browser custom track) |
Alignm length: | 539 |
Alignm identity: | 351 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 80, 137 |
Conread position: | 1-558 |
Cow position: | chr29:49121-48575 (view UCSC Genome Browser custom track) |
Alignm length: | 564 |
Alignm identity: | 384 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 88, 8 |
Conread position: | 1-562 |
Cow position: | chr29:16109049-16109633 (view UCSC Genome Browser custom track) |
Alignm length: | 591 |
Alignm identity: | 388 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 290 |
Conread position: | 1-563 |
Cow position: | chr29:11048645-11049188 (view UCSC Genome Browser custom track) |
Alignm length: | 573 |
Alignm identity: | 392 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 201, 89 |
Conread position: | 1-563 |
Cow position: | chr29:13577749-13578324 (view UCSC Genome Browser custom track) |
Alignm length: | 590 |
Alignm identity: | 396 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 88, 288 |
Conread position: | 1-563 |
Cow position: | chr29:35196061-35196579 (view UCSC Genome Browser custom track) |
Alignm length: | 568 |
Alignm identity: | 390 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 167 |
Conread position: | 1-564 |
Cow position: | chr29:103937-104480 (view UCSC Genome Browser custom track) |
Alignm length: | 570 |
Alignm identity: | 390 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 184 |
Conread position: | 1-564 |
Cow position: | chr29:611289-610705 (view UCSC Genome Browser custom track) |
Alignm length: | 591 |
Alignm identity: | 393 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 94 |
Conread position: | 1-564 |
Cow position: | chr29:2751029-2750487 (view UCSC Genome Browser custom track) |
Alignm length: | 570 |
Alignm identity: | 408 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 208 |
Conread position: | 1-564 |
Cow position: | chr29:15969818-15969244 (view UCSC Genome Browser custom track) |
Alignm length: | 589 |
Alignm identity: | 384 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 112 |
Conread position: | 1-564 |
Cow position: | chr29:16769509-16770035 (view UCSC Genome Browser custom track) |
Alignm length: | 568 |
Alignm identity: | 397 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 162 |
Conread position: | 1-564 |
Cow position: | chr29:27041393-27040857 (view UCSC Genome Browser custom track) |
Alignm length: | 569 |
Alignm identity: | 381 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 201, 89 |
Conread position: | 1-564 |
Cow position: | chr29:27251011-27250428 (view UCSC Genome Browser custom track) |
Alignm length: | 592 |
Alignm identity: | 404 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 190 |
Conread position: | 1-564 |
Cow position: | chr29:31121115-31121712 (view UCSC Genome Browser custom track) |
Alignm length: | 604 |
Alignm identity: | 395 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 87, 349 |
Conread position: | 1-564 |
Cow position: | chr29:32315361-32315947 (view UCSC Genome Browser custom track) |
Alignm length: | 594 |
Alignm identity: | 397 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 276 |
Conread position: | 1-564 |
Cow position: | chr29:35296222-35296781 (view UCSC Genome Browser custom track) |
Alignm length: | 571 |
Alignm identity: | 377 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 201, 195 |
Conread position: | 1-564 |
Cow position: | chr29:43321902-43322466 (view UCSC Genome Browser custom track) |
Alignm length: | 573 |
Alignm identity: | 392 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 131 |
Conread position: | 4-555 |
Cow position: | chr29:16021884-16022427 (view UCSC Genome Browser custom track) |
Alignm length: | 567 |
Alignm identity: | 374 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 175 |
Conread position: | 4-564 |
Cow position: | chr29:30810918-30811438 (view UCSC Genome Browser custom track) |
Alignm length: | 564 |
Alignm identity: | 381 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 293, 38 |
Conread position: | 4-564 |
Cow position: | chr29:39080350-39079799 (view UCSC Genome Browser custom track) |
Alignm length: | 569 |
Alignm identity: | 394 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 145 |
Conread position: | 8-564 |
Cow position: | chr29:15895518-15894944 (view UCSC Genome Browser custom track) |
Alignm length: | 581 |
Alignm identity: | 385 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 234 |
Conread position: | 9-490 |
Cow position: | chr29:45587937-45587466 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 342 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 165 |
Conread position: | 9-564 |
Cow position: | chr29:25933183-25932638 (view UCSC Genome Browser custom track) |
Alignm length: | 564 |
Alignm identity: | 400 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 143 |
Conread position: | 13-564 |
Cow position: | chr29:5956956-5957509 (view UCSC Genome Browser custom track) |
Alignm length: | 564 |
Alignm identity: | 389 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 40 |
Conread position: | 13-564 |
Cow position: | chr29:10824591-10824049 (view UCSC Genome Browser custom track) |
Alignm length: | 560 |
Alignm identity: | 378 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 161 |
Conread position: | 13-564 |
Cow position: | chr29:19623878-19623340 (view UCSC Genome Browser custom track) |
Alignm length: | 559 |
Alignm identity: | 385 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 103 |
Conread position: | 13-564 |
Cow position: | chr29:19652474-19653015 (view UCSC Genome Browser custom track) |
Alignm length: | 558 |
Alignm identity: | 389 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 160 |
Conread position: | 16-564 |
Cow position: | chr29:2099215-2099751 (view UCSC Genome Browser custom track) |
Alignm length: | 556 |
Alignm identity: | 393 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 151 |
Conread position: | 16-564 |
Cow position: | chr29:6267124-6266588 (view UCSC Genome Browser custom track) |
Alignm length: | 555 |
Alignm identity: | 384 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 149 |
Conread position: | 16-564 |
Cow position: | chr29:7431847-7431309 (view UCSC Genome Browser custom track) |
Alignm length: | 555 |
Alignm identity: | 388 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 157 |
Conread position: | 16-564 |
Cow position: | chr29:20250528-20251066 (view UCSC Genome Browser custom track) |
Alignm length: | 555 |
Alignm identity: | 381 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 157 |
Conread position: | 16-564 |
Cow position: | chr29:26165449-26164916 (view UCSC Genome Browser custom track) |
Alignm length: | 554 |
Alignm identity: | 388 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 157 |
Conread position: | 16-564 |
Cow position: | chr29:38226363-38226908 (view UCSC Genome Browser custom track) |
Alignm length: | 562 |
Alignm identity: | 383 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 158 |
Conread position: | 16-564 |
Cow position: | chr29:40503610-40503072 (view UCSC Genome Browser custom track) |
Alignm length: | 555 |
Alignm identity: | 380 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 67, 157 |
Conread position: | 16-564 |
Cow position: | chr29:45459093-45459622 (view UCSC Genome Browser custom track) |
Alignm length: | 555 |
Alignm identity: | 388 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 151 |
Conread position: | 23-564 |
Cow position: | chr29:10848759-10848202 (view UCSC Genome Browser custom track) |
Alignm length: | 572 |
Alignm identity: | 379 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 7 |
Conread position: | 28-536 |
Cow position: | chr29:10648864-10648369 (view UCSC Genome Browser custom track) |
Alignm length: | 515 |
Alignm identity: | 345 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 145 |
Conread position: | 28-564 |
Cow position: | chr29:34800410-34799903 (view UCSC Genome Browser custom track) |
Alignm length: | 543 |
Alignm identity: | 365 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 110 |
Conread position: | 40-564 |
Cow position: | chr29:21543963-21543458 (view UCSC Genome Browser custom track) |
Alignm length: | 537 |
Alignm identity: | 381 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 61 |
Conread position: | 46-564 |
Cow position: | chr29:23975232-23975743 (view UCSC Genome Browser custom track) |
Alignm length: | 527 |
Alignm identity: | 367 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 129 |
Conread position: | 46-564 |
Cow position: | chr29:32539210-32539717 (view UCSC Genome Browser custom track) |
Alignm length: | 525 |
Alignm identity: | 366 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 121 |
Conread position: | 54-363 |
Cow position: | chr29:8663681-8663985 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 237 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 92 |
Conread position: | 110-564 |
Cow position: | chr29:2841899-2841462 (view UCSC Genome Browser custom track) |
Alignm length: | 458 |
Alignm identity: | 325 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 182, 54 |
Conread position: | 143-564 |
Cow position: | chr29:28061181-28060759 (view UCSC Genome Browser custom track) |
Alignm length: | 427 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 125 |
Conread position: | 173-463 |
Cow position: | chr29:14368463-14368755 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 196 |
Alignm E-value: | 7e-32 |
Alignm gaps (pig, cow): | 121, 83 |
Conread position: | 176-540 |
Cow position: | chr29:6470967-6471301 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 242 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 141, 5 |
Conread position: | 184-558 |
Cow position: | chr29:803801-803425 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 256 |
Alignm E-value: | 5e-39 |
Alignm gaps (pig, cow): | 116, 45 |
Conread position: | 193-543 |
Cow position: | chr29:9644184-9643838 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 101, 63 |
Conread position: | 256-564 |
Cow position: | chr29:7840396-7840703 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 218 |
Alignm E-value: | 6.99949e-42 |
Alignm gaps (pig, cow): | 38, 116 |
Conread position: | 258-530 |
Cow position: | chr29:2468340-2468057 (view UCSC Genome Browser custom track) |
Alignm length: | 284 |
Alignm identity: | 196 |
Alignm E-value: | 9e-34 |
Alignm gaps (pig, cow): | 36, 0 |
Conread position: | 258-558 |
Cow position: | chr29:43366391-43366096 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 219 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 29 |
Conread position: | 258-564 |
Cow position: | chr29:12796863-12796559 (view UCSC Genome Browser custom track) |
Alignm length: | 310 |
Alignm identity: | 230 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 146 |
Conread position: | 269-558 |
Cow position: | chr29:2689517-2689804 (view UCSC Genome Browser custom track) |
Alignm length: | 294 |
Alignm identity: | 209 |
Alignm E-value: | 1.99993e-41 |
Alignm gaps (pig, cow): | 25, 81 |
Conread position: | 328-564 |
Cow position: | chr29:31180803-31181030 (view UCSC Genome Browser custom track) |
Alignm length: | 237 |
Alignm identity: | 172 |
Alignm E-value: | 3e-34 |
Alignm gaps (pig, cow): | 16, 0 |
Conread position: | 349-556 |
Cow position: | chr29:13853327-13853123 (view UCSC Genome Browser custom track) |
Alignm length: | 209 |
Alignm identity: | 161 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 20, 71 |
Conread position: | 354-564 |
Cow position: | chr29:21427355-21427148 (view UCSC Genome Browser custom track) |
Alignm length: | 211 |
Alignm identity: | 159 |
Alignm E-value: | 5e-39 |
Alignm gaps (pig, cow): | 11, 0 |
Conread position: | 395-564 |
Cow position: | chr29:17662661-17662830 (view UCSC Genome Browser custom track) |
Alignm length: | 171 |
Alignm identity: | 130 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 125, 107 |
Show alignments to all cow chromosomes.