Cow genome map
| Conread name: | raor023_p21.y1 |
| Conread position: | 1-169 |
| Cow position: | chr4:6566263-6566434 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-169 |
| Cow position: | chr4:24652440-24652269 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 1-453 |
| Cow position: | chr4:41953850-41954314 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 71 |
| Conread position: | 1-543 |
| Cow position: | chr4:9311280-9311845 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 490 |
| Conread position: | 1-558 |
| Cow position: | chr4:28830123-28830664 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 83 |
| Conread position: | 1-563 |
| Cow position: | chr4:1371908-1371386 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 62 |
| Conread position: | 1-563 |
| Cow position: | chr4:46663274-46663825 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 55 |
| Conread position: | 1-564 |
| Cow position: | chr4:101879-101300 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 73 |
| Conread position: | 1-564 |
| Cow position: | chr4:157573-158144 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 218 |
| Conread position: | 1-564 |
| Cow position: | chr4:528038-528622 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 172 |
| Conread position: | 1-564 |
| Cow position: | chr4:602040-602623 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 130 |
| Conread position: | 1-564 |
| Cow position: | chr4:1931550-1930994 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 126 |
| Conread position: | 1-564 |
| Cow position: | chr4:3124825-3125410 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 288 |
| Conread position: | 1-564 |
| Cow position: | chr4:6269577-6268999 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 61 |
| Conread position: | 1-564 |
| Cow position: | chr4:16055637-16056233 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 249 |
| Conread position: | 1-564 |
| Cow position: | chr4:23115132-23114547 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 239 |
| Conread position: | 1-564 |
| Cow position: | chr4:30308390-30307823 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 198 |
| Conread position: | 1-564 |
| Cow position: | chr4:47765127-47764541 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 219 |
| Conread position: | 1-564 |
| Cow position: | chr4:66925092-66925634 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 247 |
| Conread position: | 2-542 |
| Cow position: | chr4:21338910-21338379 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 223 |
| Conread position: | 3-558 |
| Cow position: | chr4:60631157-60630632 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 348 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 334, 65 |
| Conread position: | 3-558 |
| Cow position: | chr4:60672986-60673521 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 359 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 83, 116 |
| Conread position: | 4-536 |
| Cow position: | chr4:16358983-16359488 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 7-392 |
| Cow position: | chr4:54955039-54955432 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 67 |
| Conread position: | 7-564 |
| Cow position: | chr4:34185773-34185238 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 204 |
| Conread position: | 7-564 |
| Cow position: | chr4:51044800-51044262 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 365 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 190, 15 |
| Conread position: | 8-446 |
| Cow position: | chr4:3357812-3358238 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 108 |
| Conread position: | 8-563 |
| Cow position: | chr4:13547070-13547656 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 293 |
| Conread position: | 13-500 |
| Cow position: | chr4:46713244-46712776 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 160 |
| Conread position: | 13-530 |
| Cow position: | chr4:8599033-8598542 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 337 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 288, 71 |
| Conread position: | 13-558 |
| Cow position: | chr4:6491258-6490723 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 124 |
| Conread position: | 13-564 |
| Cow position: | chr4:3960684-3961221 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 154 |
| Conread position: | 13-564 |
| Cow position: | chr4:18515977-18516525 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 136 |
| Conread position: | 16-162 |
| Cow position: | chr4:11617566-11617714 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 70, 42 |
| Conread position: | 16-446 |
| Cow position: | chr4:57978514-57978930 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 127 |
| Conread position: | 16-453 |
| Cow position: | chr4:41118218-41118649 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 151 |
| Conread position: | 16-473 |
| Cow position: | chr4:33074289-33073845 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 81 |
| Conread position: | 16-536 |
| Cow position: | chr4:25600509-25600011 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 151 |
| Conread position: | 16-562 |
| Cow position: | chr4:41330531-41331068 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 16-562 |
| Cow position: | chr4:45050204-45049671 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 16-564 |
| Cow position: | chr4:355007-355539 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 136 |
| Conread position: | 16-564 |
| Cow position: | chr4:4905246-4905783 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 16-564 |
| Cow position: | chr4:24446105-24445570 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 134 |
| Conread position: | 16-564 |
| Cow position: | chr4:29532623-29532085 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 159 |
| Conread position: | 16-564 |
| Cow position: | chr4:36895465-36896003 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 16-564 |
| Cow position: | chr4:43320545-43320007 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 16-564 |
| Cow position: | chr4:43880202-43880738 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 16-564 |
| Cow position: | chr4:44724183-44724712 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 73 |
| Conread position: | 16-564 |
| Cow position: | chr4:48025497-48026027 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 27-564 |
| Cow position: | chr4:1050521-1049991 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 148 |
| Conread position: | 28-564 |
| Cow position: | chr4:13491674-13492205 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 141 |
| Conread position: | 28-564 |
| Cow position: | chr4:33492912-33493441 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 147 |
| Conread position: | 30-564 |
| Cow position: | chr4:58883562-58883053 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 340 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 200, 44 |
| Conread position: | 40-564 |
| Cow position: | chr4:65224452-65223905 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 201 |
| Conread position: | 54-224 |
| Cow position: | chr4:4168614-4168785 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 33, 119 |
| Conread position: | 73-564 |
| Cow position: | chr4:31668479-31668943 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 100 |
| Conread position: | 90-564 |
| Cow position: | chr4:10407929-10408410 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 71 |
| Conread position: | 129-558 |
| Cow position: | chr4:11383631-11384034 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 19, 41 |
| Conread position: | 150-564 |
| Cow position: | chr4:5879402-5879800 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 144, 106 |
| Conread position: | 157-558 |
| Cow position: | chr4:1464689-1464305 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 31 |
| Conread position: | 184-558 |
| Cow position: | chr4:6215295-6214929 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 117, 82 |
| Conread position: | 191-526 |
| Cow position: | chr4:60265537-60265194 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 17, 45 |
| Conread position: | 191-556 |
| Cow position: | chr4:11394065-11393715 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 126, 38 |
| Conread position: | 213-564 |
| Cow position: | chr4:54190158-54190484 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 255 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 81, 9 |
| Conread position: | 214-564 |
| Cow position: | chr4:12241942-12241590 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 242 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 7, 54 |
| Conread position: | 253-564 |
| Cow position: | chr4:27442416-27442719 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 35, 48 |
| Conread position: | 258-471 |
| Cow position: | chr4:11617760-11617983 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 258-564 |
| Cow position: | chr4:17926932-17926625 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 224 |
| Conread position: | 261-564 |
| Cow position: | chr4:32211493-32211796 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 57, 207 |
| Conread position: | 263-564 |
| Cow position: | chr4:47718263-47717978 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 31, 64 |
| Conread position: | 353-564 |
| Cow position: | chr4:18425098-18424891 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 16, 102 |
| Conread position: | 365-564 |
| Cow position: | chr4:66179553-66179359 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 153, 16 |
| Conread position: | 394-564 |
| Cow position: | chr4:12608040-12607875 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 86, 16 |
Show alignments to all cow chromosomes.