Cow genome map
| Conread name: | raor023_p21.y1 | 
| Conread position: | 1-169 | 
| Cow position: | chr6:8444377-8444206 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 6e-26 | 
| Alignm gaps (pig, cow): | 84, 0 | 
| Conread position: | 1-169 | 
| Cow position: | chr6:33795043-33794872 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 84, 0 | 
| Conread position: | 1-169 | 
| Cow position: | chr6:58409733-58409562 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 5e-25 | 
| Alignm gaps (pig, cow): | 84, 0 | 
| Conread position: | 1-169 | 
| Cow position: | chr6:65926994-65927163 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 88, 64 | 
| Conread position: | 1-221 | 
| Cow position: | chr6:13275899-13276112 (view UCSC Genome Browser custom track) | 
| Alignm length: | 227 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 45, 55 | 
| Conread position: | 1-363 | 
| Cow position: | chr6:734456-734834 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 84, 198 | 
| Conread position: | 1-451 | 
| Cow position: | chr6:66194658-66194223 (view UCSC Genome Browser custom track) | 
| Alignm length: | 456 | 
| Alignm identity: | 286 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 67, 55 | 
| Conread position: | 1-498 | 
| Cow position: | chr6:41757704-41757186 (view UCSC Genome Browser custom track) | 
| Alignm length: | 522 | 
| Alignm identity: | 356 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 371 | 
| Conread position: | 1-499 | 
| Cow position: | chr6:6935845-6935324 (view UCSC Genome Browser custom track) | 
| Alignm length: | 526 | 
| Alignm identity: | 363 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 240 | 
| Conread position: | 1-500 | 
| Cow position: | chr6:43795413-43794907 (view UCSC Genome Browser custom track) | 
| Alignm length: | 516 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 15 | 
| Conread position: | 1-543 | 
| Cow position: | chr6:332198-331622 (view UCSC Genome Browser custom track) | 
| Alignm length: | 583 | 
| Alignm identity: | 394 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 47 | 
| Conread position: | 1-543 | 
| Cow position: | chr6:66231132-66231648 (view UCSC Genome Browser custom track) | 
| Alignm length: | 550 | 
| Alignm identity: | 382 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 20 | 
| Conread position: | 1-558 | 
| Cow position: | chr6:10559301-10558797 (view UCSC Genome Browser custom track) | 
| Alignm length: | 561 | 
| Alignm identity: | 383 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 162 | 
| Conread position: | 1-558 | 
| Cow position: | chr6:13977824-13978382 (view UCSC Genome Browser custom track) | 
| Alignm length: | 565 | 
| Alignm identity: | 366 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 60 | 
| Conread position: | 1-558 | 
| Cow position: | chr6:42926716-42927245 (view UCSC Genome Browser custom track) | 
| Alignm length: | 570 | 
| Alignm identity: | 400 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 52 | 
| Conread position: | 1-563 | 
| Cow position: | chr6:3489082-3488536 (view UCSC Genome Browser custom track) | 
| Alignm length: | 572 | 
| Alignm identity: | 386 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 169 | 
| Conread position: | 1-563 | 
| Cow position: | chr6:11278380-11277835 (view UCSC Genome Browser custom track) | 
| Alignm length: | 568 | 
| Alignm identity: | 411 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 85, 27 | 
| Conread position: | 1-563 | 
| Cow position: | chr6:28492223-28491649 (view UCSC Genome Browser custom track) | 
| Alignm length: | 584 | 
| Alignm identity: | 392 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 81 | 
| Conread position: | 1-563 | 
| Cow position: | chr6:65900602-65900054 (view UCSC Genome Browser custom track) | 
| Alignm length: | 569 | 
| Alignm identity: | 394 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 80, 29 | 
| Conread position: | 1-564 | 
| Cow position: | chr6:1405947-1405371 (view UCSC Genome Browser custom track) | 
| Alignm length: | 584 | 
| Alignm identity: | 399 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 362 | 
| Conread position: | 1-564 | 
| Cow position: | chr6:2373991-2374569 (view UCSC Genome Browser custom track) | 
| Alignm length: | 591 | 
| Alignm identity: | 393 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 82, 289 | 
| Conread position: | 1-564 | 
| Cow position: | chr6:2553991-2554573 (view UCSC Genome Browser custom track) | 
| Alignm length: | 591 | 
| Alignm identity: | 401 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 82, 251 | 
| Conread position: | 1-564 | 
| Cow position: | chr6:12093542-12092997 (view UCSC Genome Browser custom track) | 
| Alignm length: | 566 | 
| Alignm identity: | 409 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 293, 86 | 
| Conread position: | 1-564 | 
| Cow position: | chr6:13846348-13846913 (view UCSC Genome Browser custom track) | 
| Alignm length: | 578 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 82, 172 | 
| Conread position: | 1-564 | 
| Cow position: | chr6:13943179-13943776 (view UCSC Genome Browser custom track) | 
| Alignm length: | 605 | 
| Alignm identity: | 369 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 84, 346 | 
| Conread position: | 1-564 | 
| Cow position: | chr6:19453255-19453788 (view UCSC Genome Browser custom track) | 
| Alignm length: | 570 | 
| Alignm identity: | 386 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 108 | 
| Conread position: | 1-564 | 
| Cow position: | chr6:26671585-26670998 (view UCSC Genome Browser custom track) | 
| Alignm length: | 596 | 
| Alignm identity: | 404 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 382 | 
| Conread position: | 1-564 | 
| Cow position: | chr6:27168856-27169442 (view UCSC Genome Browser custom track) | 
| Alignm length: | 591 | 
| Alignm identity: | 394 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 289 | 
| Conread position: | 1-564 | 
| Cow position: | chr6:28062632-28063203 (view UCSC Genome Browser custom track) | 
| Alignm length: | 588 | 
| Alignm identity: | 399 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 96 | 
| Conread position: | 1-564 | 
| Cow position: | chr6:39907437-39908015 (view UCSC Genome Browser custom track) | 
| Alignm length: | 590 | 
| Alignm identity: | 406 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 28 | 
| Conread position: | 1-564 | 
| Cow position: | chr6:40274539-40275124 (view UCSC Genome Browser custom track) | 
| Alignm length: | 592 | 
| Alignm identity: | 404 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 52 | 
| Conread position: | 1-564 | 
| Cow position: | chr6:43616994-43617582 (view UCSC Genome Browser custom track) | 
| Alignm length: | 594 | 
| Alignm identity: | 404 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 191 | 
| Conread position: | 1-564 | 
| Cow position: | chr6:44028337-44028913 (view UCSC Genome Browser custom track) | 
| Alignm length: | 589 | 
| Alignm identity: | 394 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 240 | 
| Conread position: | 1-564 | 
| Cow position: | chr6:44151262-44150692 (view UCSC Genome Browser custom track) | 
| Alignm length: | 577 | 
| Alignm identity: | 386 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 199 | 
| Conread position: | 1-564 | 
| Cow position: | chr6:45671549-45672130 (view UCSC Genome Browser custom track) | 
| Alignm length: | 590 | 
| Alignm identity: | 401 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 240 | 
| Conread position: | 1-564 | 
| Cow position: | chr6:57870724-57870138 (view UCSC Genome Browser custom track) | 
| Alignm length: | 591 | 
| Alignm identity: | 400 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 279 | 
| Conread position: | 3-564 | 
| Cow position: | chr6:21686216-21686753 (view UCSC Genome Browser custom track) | 
| Alignm length: | 570 | 
| Alignm identity: | 395 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 171 | 
| Conread position: | 4-370 | 
| Cow position: | chr6:37477549-37477916 (view UCSC Genome Browser custom track) | 
| Alignm length: | 375 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 82, 180 | 
| Conread position: | 4-543 | 
| Cow position: | chr6:65880173-65880711 (view UCSC Genome Browser custom track) | 
| Alignm length: | 552 | 
| Alignm identity: | 383 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 166 | 
| Conread position: | 4-564 | 
| Cow position: | chr6:3278636-3278085 (view UCSC Genome Browser custom track) | 
| Alignm length: | 568 | 
| Alignm identity: | 391 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 171 | 
| Conread position: | 4-564 | 
| Cow position: | chr6:36525359-36525908 (view UCSC Genome Browser custom track) | 
| Alignm length: | 567 | 
| Alignm identity: | 390 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 171 | 
| Conread position: | 5-564 | 
| Cow position: | chr6:38231583-38232141 (view UCSC Genome Browser custom track) | 
| Alignm length: | 569 | 
| Alignm identity: | 430 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 81, 170 | 
| Conread position: | 8-554 | 
| Cow position: | chr6:10053961-10054469 (view UCSC Genome Browser custom track) | 
| Alignm length: | 551 | 
| Alignm identity: | 378 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 81, 25 | 
| Conread position: | 8-563 | 
| Cow position: | chr6:13103347-13103922 (view UCSC Genome Browser custom track) | 
| Alignm length: | 584 | 
| Alignm identity: | 398 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 91 | 
| Conread position: | 8-564 | 
| Cow position: | chr6:17598990-17598415 (view UCSC Genome Browser custom track) | 
| Alignm length: | 585 | 
| Alignm identity: | 398 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 125, 180 | 
| Conread position: | 9-372 | 
| Cow position: | chr6:47958401-47958779 (view UCSC Genome Browser custom track) | 
| Alignm length: | 384 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 139, 65 | 
| Conread position: | 9-564 | 
| Cow position: | chr6:27530675-27530137 (view UCSC Genome Browser custom track) | 
| Alignm length: | 563 | 
| Alignm identity: | 385 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 140 | 
| Conread position: | 11-564 | 
| Cow position: | chr6:7142169-7141606 (view UCSC Genome Browser custom track) | 
| Alignm length: | 577 | 
| Alignm identity: | 398 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 110, 70 | 
| Conread position: | 11-564 | 
| Cow position: | chr6:65822807-65822261 (view UCSC Genome Browser custom track) | 
| Alignm length: | 566 | 
| Alignm identity: | 381 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 135 | 
| Conread position: | 11-564 | 
| Cow position: | chr6:68026072-68026647 (view UCSC Genome Browser custom track) | 
| Alignm length: | 581 | 
| Alignm identity: | 387 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 274 | 
| Conread position: | 13-407 | 
| Cow position: | chr6:2111628-2111246 (view UCSC Genome Browser custom track) | 
| Alignm length: | 401 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 75, 160 | 
| Conread position: | 13-521 | 
| Cow position: | chr6:2401592-2402072 (view UCSC Genome Browser custom track) | 
| Alignm length: | 521 | 
| Alignm identity: | 360 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 154 | 
| Conread position: | 13-562 | 
| Cow position: | chr6:30478410-30478955 (view UCSC Genome Browser custom track) | 
| Alignm length: | 558 | 
| Alignm identity: | 415 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 76, 249 | 
| Conread position: | 13-564 | 
| Cow position: | chr6:8201056-8201597 (view UCSC Genome Browser custom track) | 
| Alignm length: | 559 | 
| Alignm identity: | 390 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 161 | 
| Conread position: | 13-564 | 
| Cow position: | chr6:15141846-15141310 (view UCSC Genome Browser custom track) | 
| Alignm length: | 559 | 
| Alignm identity: | 390 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 155 | 
| Conread position: | 13-564 | 
| Cow position: | chr6:27468596-27469119 (view UCSC Genome Browser custom track) | 
| Alignm length: | 559 | 
| Alignm identity: | 387 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 12 | 
| Conread position: | 13-564 | 
| Cow position: | chr6:50498125-50497593 (view UCSC Genome Browser custom track) | 
| Alignm length: | 557 | 
| Alignm identity: | 381 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 100 | 
| Conread position: | 13-564 | 
| Cow position: | chr6:64712879-64713407 (view UCSC Genome Browser custom track) | 
| Alignm length: | 558 | 
| Alignm identity: | 370 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 76, 97 | 
| Conread position: | 13-564 | 
| Cow position: | chr6:64714446-64714981 (view UCSC Genome Browser custom track) | 
| Alignm length: | 558 | 
| Alignm identity: | 376 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 76, 97 | 
| Conread position: | 16-471 | 
| Cow position: | chr6:33458900-33459360 (view UCSC Genome Browser custom track) | 
| Alignm length: | 476 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 162, 14 | 
| Conread position: | 16-482 | 
| Cow position: | chr6:52184-51734 (view UCSC Genome Browser custom track) | 
| Alignm length: | 473 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 125 | 
| Conread position: | 16-498 | 
| Cow position: | chr6:24238379-24238847 (view UCSC Genome Browser custom track) | 
| Alignm length: | 489 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 151 | 
| Conread position: | 16-563 | 
| Cow position: | chr6:5951907-5951372 (view UCSC Genome Browser custom track) | 
| Alignm length: | 554 | 
| Alignm identity: | 382 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 157 | 
| Conread position: | 16-563 | 
| Cow position: | chr6:39436966-39437505 (view UCSC Genome Browser custom track) | 
| Alignm length: | 554 | 
| Alignm identity: | 390 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 150 | 
| Conread position: | 16-564 | 
| Cow position: | chr6:912959-913494 (view UCSC Genome Browser custom track) | 
| Alignm length: | 556 | 
| Alignm identity: | 380 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 149 | 
| Conread position: | 16-564 | 
| Cow position: | chr6:1823911-1823384 (view UCSC Genome Browser custom track) | 
| Alignm length: | 555 | 
| Alignm identity: | 377 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 101 | 
| Conread position: | 16-564 | 
| Cow position: | chr6:15281215-15280677 (view UCSC Genome Browser custom track) | 
| Alignm length: | 555 | 
| Alignm identity: | 374 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 157 | 
| Conread position: | 16-564 | 
| Cow position: | chr6:30275842-30275313 (view UCSC Genome Browser custom track) | 
| Alignm length: | 556 | 
| Alignm identity: | 373 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 151 | 
| Conread position: | 16-564 | 
| Cow position: | chr6:34893679-34893144 (view UCSC Genome Browser custom track) | 
| Alignm length: | 554 | 
| Alignm identity: | 383 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 132 | 
| Conread position: | 16-564 | 
| Cow position: | chr6:55544999-55544461 (view UCSC Genome Browser custom track) | 
| Alignm length: | 555 | 
| Alignm identity: | 379 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 157 | 
| Conread position: | 16-564 | 
| Cow position: | chr6:65840916-65841460 (view UCSC Genome Browser custom track) | 
| Alignm length: | 561 | 
| Alignm identity: | 370 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 158 | 
| Conread position: | 17-558 | 
| Cow position: | chr6:21971006-21971533 (view UCSC Genome Browser custom track) | 
| Alignm length: | 547 | 
| Alignm identity: | 378 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 41 | 
| Conread position: | 17-563 | 
| Cow position: | chr6:35877387-35876854 (view UCSC Genome Browser custom track) | 
| Alignm length: | 554 | 
| Alignm identity: | 383 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 124 | 
| Conread position: | 41-564 | 
| Cow position: | chr6:3890134-3889614 (view UCSC Genome Browser custom track) | 
| Alignm length: | 539 | 
| Alignm identity: | 372 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 100 | 
| Conread position: | 41-564 | 
| Cow position: | chr6:6477108-6476589 (view UCSC Genome Browser custom track) | 
| Alignm length: | 528 | 
| Alignm identity: | 400 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 8, 62 | 
| Conread position: | 45-403 | 
| Cow position: | chr6:13318328-13317980 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 107 | 
| Conread position: | 46-564 | 
| Cow position: | chr6:28274350-28274849 (view UCSC Genome Browser custom track) | 
| Alignm length: | 526 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 124 | 
| Conread position: | 68-562 | 
| Cow position: | chr6:47044041-47043568 (view UCSC Genome Browser custom track) | 
| Alignm length: | 496 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 233, 102 | 
| Conread position: | 82-442 | 
| Cow position: | chr6:52735792-52736147 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 212, 82 | 
| Conread position: | 129-438 | 
| Cow position: | chr6:21836679-21836358 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 7e-28 | 
| Alignm gaps (pig, cow): | 45, 16 | 
| Conread position: | 150-564 | 
| Cow position: | chr6:40314370-40314767 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 144, 59 | 
| Conread position: | 168-564 | 
| Cow position: | chr6:20561637-20561244 (view UCSC Genome Browser custom track) | 
| Alignm length: | 400 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 128, 13 | 
| Conread position: | 171-564 | 
| Cow position: | chr6:65908907-65909292 (view UCSC Genome Browser custom track) | 
| Alignm length: | 397 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 125, 95 | 
| Conread position: | 173-564 | 
| Cow position: | chr6:34126827-34127214 (view UCSC Genome Browser custom track) | 
| Alignm length: | 395 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 121, 93 | 
| Conread position: | 193-558 | 
| Cow position: | chr6:701450-701816 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 23 | 
| Conread position: | 203-440 | 
| Cow position: | chr6:28106255-28106023 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 91, 25 | 
| Conread position: | 203-564 | 
| Cow position: | chr6:6566118-6566478 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 59 | 
| Conread position: | 204-564 | 
| Cow position: | chr6:17045570-17045924 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 58 | 
| Conread position: | 204-564 | 
| Cow position: | chr6:29311001-29311356 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 59 | 
| Conread position: | 244-559 | 
| Cow position: | chr6:42723373-42723064 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 18 | 
| Conread position: | 258-558 | 
| Cow position: | chr6:35421001-35420721 (view UCSC Genome Browser custom track) | 
| Alignm length: | 304 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 39, 25 | 
| Conread position: | 258-558 | 
| Cow position: | chr6:65007404-65007697 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 59, 35 | 
| Conread position: | 258-564 | 
| Cow position: | chr6:33388378-33388699 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 4.06377e-44 | 
| Alignm gaps (pig, cow): | 36, 211 | 
| Conread position: | 258-564 | 
| Cow position: | chr6:58409349-58409047 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 99 | 
| Conread position: | 258-564 | 
| Cow position: | chr6:59919715-59919413 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 90 | 
| Conread position: | 258-564 | 
| Cow position: | chr6:68362756-68362454 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 167 | 
| Conread position: | 259-564 | 
| Cow position: | chr6:8761741-8761435 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 210 | 
| Conread position: | 268-563 | 
| Cow position: | chr6:65927514-65927801 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 8.99999e-40 | 
| Alignm gaps (pig, cow): | 26, 76 | 
| Conread position: | 275-558 | 
| Cow position: | chr6:59741476-59741191 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 8e-29 | 
| Alignm gaps (pig, cow): | 51, 39 | 
| Conread position: | 296-558 | 
| Cow position: | chr6:63198538-63198284 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 21, 75 | 
| Conread position: | 352-564 | 
| Cow position: | chr6:37115797-37116004 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 17, 0 | 
| Conread position: | 404-564 | 
| Cow position: | chr6:13317776-13317620 (view UCSC Genome Browser custom track) | 
| Alignm length: | 161 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 4e-23 | 
| Alignm gaps (pig, cow): | 40, 0 | 
Show alignments to all cow chromosomes.
