Cow genome map

Conread name: raor023_p21.y1

Conread position: 1-169
Cow position: chr6:8444377-8444206 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 84, 0

Conread position: 1-169
Cow position: chr6:33795043-33794872 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 84, 0

Conread position: 1-169
Cow position: chr6:58409733-58409562 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 84, 0

Conread position: 1-169
Cow position: chr6:65926994-65927163 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 88, 64

Conread position: 1-221
Cow position: chr6:13275899-13276112 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 45, 55

Conread position: 1-363
Cow position: chr6:734456-734834 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 248
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 84, 198

Conread position: 1-451
Cow position: chr6:66194658-66194223 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 286
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 67, 55

Conread position: 1-498
Cow position: chr6:41757704-41757186 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 371

Conread position: 1-499
Cow position: chr6:6935845-6935324 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 240

Conread position: 1-500
Cow position: chr6:43795413-43794907 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 15

Conread position: 1-543
Cow position: chr6:332198-331622 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 47

Conread position: 1-543
Cow position: chr6:66231132-66231648 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 20

Conread position: 1-558
Cow position: chr6:10559301-10558797 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 162

Conread position: 1-558
Cow position: chr6:13977824-13978382 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 60

Conread position: 1-558
Cow position: chr6:42926716-42927245 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 52

Conread position: 1-563
Cow position: chr6:3489082-3488536 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 169

Conread position: 1-563
Cow position: chr6:11278380-11277835 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 27

Conread position: 1-563
Cow position: chr6:28492223-28491649 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 81

Conread position: 1-563
Cow position: chr6:65900602-65900054 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 29

Conread position: 1-564
Cow position: chr6:1405947-1405371 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 362

Conread position: 1-564
Cow position: chr6:2373991-2374569 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 289

Conread position: 1-564
Cow position: chr6:2553991-2554573 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 251

Conread position: 1-564
Cow position: chr6:12093542-12092997 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 86

Conread position: 1-564
Cow position: chr6:13846348-13846913 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 274
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 82, 172

Conread position: 1-564
Cow position: chr6:13943179-13943776 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 369
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 84, 346

Conread position: 1-564
Cow position: chr6:19453255-19453788 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 108

Conread position: 1-564
Cow position: chr6:26671585-26670998 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 382

Conread position: 1-564
Cow position: chr6:27168856-27169442 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 289

Conread position: 1-564
Cow position: chr6:28062632-28063203 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 96

Conread position: 1-564
Cow position: chr6:39907437-39908015 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 28

Conread position: 1-564
Cow position: chr6:40274539-40275124 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 52

Conread position: 1-564
Cow position: chr6:43616994-43617582 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 191

Conread position: 1-564
Cow position: chr6:44028337-44028913 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 240

Conread position: 1-564
Cow position: chr6:44151262-44150692 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 199

Conread position: 1-564
Cow position: chr6:45671549-45672130 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 240

Conread position: 1-564
Cow position: chr6:57870724-57870138 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 279

Conread position: 3-564
Cow position: chr6:21686216-21686753 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 171

Conread position: 4-370
Cow position: chr6:37477549-37477916 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 249
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 82, 180

Conread position: 4-543
Cow position: chr6:65880173-65880711 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 166

Conread position: 4-564
Cow position: chr6:3278636-3278085 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 171

Conread position: 4-564
Cow position: chr6:36525359-36525908 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 171

Conread position: 5-564
Cow position: chr6:38231583-38232141 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 170

Conread position: 8-554
Cow position: chr6:10053961-10054469 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 25

Conread position: 8-563
Cow position: chr6:13103347-13103922 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 91

Conread position: 8-564
Cow position: chr6:17598990-17598415 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 180

Conread position: 9-372
Cow position: chr6:47958401-47958779 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 65

Conread position: 9-564
Cow position: chr6:27530675-27530137 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 140

Conread position: 11-564
Cow position: chr6:7142169-7141606 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 70

Conread position: 11-564
Cow position: chr6:65822807-65822261 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 135

Conread position: 11-564
Cow position: chr6:68026072-68026647 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 274

Conread position: 13-407
Cow position: chr6:2111628-2111246 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 275
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 75, 160

Conread position: 13-521
Cow position: chr6:2401592-2402072 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 154

Conread position: 13-562
Cow position: chr6:30478410-30478955 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 249

Conread position: 13-564
Cow position: chr6:8201056-8201597 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 161

Conread position: 13-564
Cow position: chr6:15141846-15141310 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 155

Conread position: 13-564
Cow position: chr6:27468596-27469119 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 12

Conread position: 13-564
Cow position: chr6:50498125-50497593 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 100

Conread position: 13-564
Cow position: chr6:64712879-64713407 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 97

Conread position: 13-564
Cow position: chr6:64714446-64714981 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 97

Conread position: 16-471
Cow position: chr6:33458900-33459360 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 319
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 162, 14

Conread position: 16-482
Cow position: chr6:52184-51734 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 125

Conread position: 16-498
Cow position: chr6:24238379-24238847 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 151

Conread position: 16-563
Cow position: chr6:5951907-5951372 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 157

Conread position: 16-563
Cow position: chr6:39436966-39437505 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 150

Conread position: 16-564
Cow position: chr6:912959-913494 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 149

Conread position: 16-564
Cow position: chr6:1823911-1823384 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 101

Conread position: 16-564
Cow position: chr6:15281215-15280677 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 157

Conread position: 16-564
Cow position: chr6:30275842-30275313 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 151

Conread position: 16-564
Cow position: chr6:34893679-34893144 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 132

Conread position: 16-564
Cow position: chr6:55544999-55544461 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 157

Conread position: 16-564
Cow position: chr6:65840916-65841460 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 158

Conread position: 17-558
Cow position: chr6:21971006-21971533 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 41

Conread position: 17-563
Cow position: chr6:35877387-35876854 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 124

Conread position: 41-564
Cow position: chr6:3890134-3889614 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 100

Conread position: 41-564
Cow position: chr6:6477108-6476589 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 62

Conread position: 45-403
Cow position: chr6:13318328-13317980 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 107

Conread position: 46-564
Cow position: chr6:28274350-28274849 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 124

Conread position: 68-562
Cow position: chr6:47044041-47043568 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 102

Conread position: 82-442
Cow position: chr6:52735792-52736147 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 82

Conread position: 129-438
Cow position: chr6:21836679-21836358 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 213
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 45, 16

Conread position: 150-564
Cow position: chr6:40314370-40314767 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 59

Conread position: 168-564
Cow position: chr6:20561637-20561244 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 13

Conread position: 171-564
Cow position: chr6:65908907-65909292 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 95

Conread position: 173-564
Cow position: chr6:34126827-34127214 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 93

Conread position: 193-558
Cow position: chr6:701450-701816 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 23

Conread position: 203-440
Cow position: chr6:28106255-28106023 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 173
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 91, 25

Conread position: 203-564
Cow position: chr6:6566118-6566478 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 59

Conread position: 204-564
Cow position: chr6:17045570-17045924 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 58

Conread position: 204-564
Cow position: chr6:29311001-29311356 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 59

Conread position: 244-559
Cow position: chr6:42723373-42723064 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 18

Conread position: 258-558
Cow position: chr6:35421001-35420721 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 210
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 39, 25

Conread position: 258-558
Cow position: chr6:65007404-65007697 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 35

Conread position: 258-564
Cow position: chr6:33388378-33388699 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 236
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 36, 211

Conread position: 258-564
Cow position: chr6:58409349-58409047 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 99

Conread position: 258-564
Cow position: chr6:59919715-59919413 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 90

Conread position: 258-564
Cow position: chr6:68362756-68362454 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 167

Conread position: 259-564
Cow position: chr6:8761741-8761435 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 210

Conread position: 268-563
Cow position: chr6:65927514-65927801 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 212
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 26, 76

Conread position: 275-558
Cow position: chr6:59741476-59741191 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 195
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 51, 39

Conread position: 296-558
Cow position: chr6:63198538-63198284 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 174
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 75

Conread position: 352-564
Cow position: chr6:37115797-37116004 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 164
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 17, 0

Conread position: 404-564
Cow position: chr6:13317776-13317620 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 40, 0

Show alignments to all cow chromosomes.