Cow genome map

Conread name: raor023_p21.y1

Conread position: 1-146
Cow position: chr7:27536996-27536848 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 124
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 85, 0

Conread position: 1-159
Cow position: chr7:26890152-26890314 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 85, 0

Conread position: 1-162
Cow position: chr7:21976516-21976349 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 85, 0

Conread position: 1-190
Cow position: chr7:68858925-68858735 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 146
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 88, 17

Conread position: 1-193
Cow position: chr7:993673-993868 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 147
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 86, 0

Conread position: 1-195
Cow position: chr7:35288219-35288025 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 153
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 1-207
Cow position: chr7:20302825-20303034 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 148
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 84, 198

Conread position: 1-267
Cow position: chr7:5661716-5661977 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 182
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 214, 28

Conread position: 1-382
Cow position: chr7:68779456-68779084 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 157

Conread position: 1-408
Cow position: chr7:21242701-21242300 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 8

Conread position: 1-436
Cow position: chr7:47049834-47050250 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 127

Conread position: 1-462
Cow position: chr7:6719917-6720403 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 289

Conread position: 1-471
Cow position: chr7:29371351-29370901 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 76

Conread position: 1-540
Cow position: chr7:49289985-49290526 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 76

Conread position: 1-557
Cow position: chr7:3154181-3154730 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 42

Conread position: 1-557
Cow position: chr7:48632806-48633344 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 82

Conread position: 1-558
Cow position: chr7:41489547-41490068 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 243

Conread position: 1-558
Cow position: chr7:67416474-67416994 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 165

Conread position: 1-558
Cow position: chr7:67425784-67426368 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 81

Conread position: 1-559
Cow position: chr7:63384723-63385300 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 280

Conread position: 1-562
Cow position: chr7:3301785-3301201 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 357

Conread position: 1-563
Cow position: chr7:27143739-27144281 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 29

Conread position: 1-564
Cow position: chr7:17501-16917 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 256

Conread position: 1-564
Cow position: chr7:6649284-6648700 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 240

Conread position: 1-564
Cow position: chr7:11467356-11466782 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 152

Conread position: 1-564
Cow position: chr7:20529326-20528720 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 397
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 84, 372

Conread position: 1-564
Cow position: chr7:20555066-20555669 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 0

Conread position: 1-564
Cow position: chr7:27102741-27102159 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 289

Conread position: 1-564
Cow position: chr7:51013374-51013924 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 164

Conread position: 1-564
Cow position: chr7:52120672-52120124 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 244

Conread position: 1-564
Cow position: chr7:55538524-55537962 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 162

Conread position: 1-564
Cow position: chr7:61558583-61559168 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 240

Conread position: 3-304
Cow position: chr7:24421370-24421666 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 215
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 84, 13

Conread position: 3-563
Cow position: chr7:64242533-64241988 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 36

Conread position: 4-337
Cow position: chr7:33406798-33406479 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 228
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 12, 84

Conread position: 4-563
Cow position: chr7:21235606-21235057 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 172

Conread position: 5-510
Cow position: chr7:1358259-1357768 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 230

Conread position: 7-490
Cow position: chr7:34148517-34148988 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 173

Conread position: 7-558
Cow position: chr7:60857944-60857419 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 174

Conread position: 7-563
Cow position: chr7:26883551-26884085 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 183

Conread position: 8-315
Cow position: chr7:7255668-7255978 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 208
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 77, 191

Conread position: 8-564
Cow position: chr7:3235305-3234728 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 264

Conread position: 8-564
Cow position: chr7:25438917-25439475 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 208

Conread position: 9-169
Cow position: chr7:21251809-21251646 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 19, 27

Conread position: 9-470
Cow position: chr7:20429586-20429150 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 53

Conread position: 9-506
Cow position: chr7:1448902-1449392 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 22

Conread position: 9-543
Cow position: chr7:53990169-53990676 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 214

Conread position: 9-564
Cow position: chr7:14140182-14139641 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 158

Conread position: 11-317
Cow position: chr7:3729482-3729776 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 212
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 60, 142

Conread position: 11-452
Cow position: chr7:20107127-20106705 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 298
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 76, 111

Conread position: 11-564
Cow position: chr7:447206-446676 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 14

Conread position: 11-564
Cow position: chr7:6643493-6642923 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 15

Conread position: 12-564
Cow position: chr7:26025446-26025994 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 26

Conread position: 13-415
Cow position: chr7:30156886-30156480 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 245

Conread position: 13-564
Cow position: chr7:34485325-34485863 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 46

Conread position: 16-473
Cow position: chr7:13538310-13537862 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 159

Conread position: 16-544
Cow position: chr7:21128226-21127722 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 91

Conread position: 16-559
Cow position: chr7:38396643-38397171 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 158

Conread position: 16-564
Cow position: chr7:1373231-1372697 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 157

Conread position: 16-564
Cow position: chr7:24809050-24808512 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 130

Conread position: 16-564
Cow position: chr7:54602267-54602806 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 99

Conread position: 25-564
Cow position: chr7:27786059-27786579 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 150

Conread position: 25-564
Cow position: chr7:39791163-39791695 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 148

Conread position: 28-558
Cow position: chr7:67798284-67798801 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 147

Conread position: 28-564
Cow position: chr7:21984829-21985354 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 145

Conread position: 40-218
Cow position: chr7:68436575-68436394 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 50, 60

Conread position: 44-558
Cow position: chr7:8145792-8145289 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 129

Conread position: 72-497
Cow position: chr7:1736700-1736294 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 296
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 21, 34

Conread position: 73-564
Cow position: chr7:46902598-46902121 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 40

Conread position: 85-564
Cow position: chr7:63020339-63020808 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 26

Conread position: 94-564
Cow position: chr7:29469360-29469819 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 127

Conread position: 103-536
Cow position: chr7:39109210-39108791 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 125

Conread position: 123-564
Cow position: chr7:21309744-21310164 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 0

Conread position: 128-536
Cow position: chr7:20294400-20294799 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 279
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 19, 12

Conread position: 143-564
Cow position: chr7:47374530-47374952 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 125

Conread position: 189-564
Cow position: chr7:62680070-62679688 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 253
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 107, 23

Conread position: 202-564
Cow position: chr7:522242-521889 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 27

Conread position: 204-559
Cow position: chr7:1400752-1400411 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 30

Conread position: 204-564
Cow position: chr7:35287966-35287605 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 249

Conread position: 206-564
Cow position: chr7:5661956-5662335 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 262
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 88, 56

Conread position: 210-452
Cow position: chr7:68907213-68907463 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 178
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 21, 13

Conread position: 210-564
Cow position: chr7:30119940-30119582 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 226
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 50, 19

Conread position: 217-557
Cow position: chr7:59027632-59027966 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 218
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 80, 49

Conread position: 223-564
Cow position: chr7:26890422-26890756 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 33

Conread position: 243-552
Cow position: chr7:68858456-68858151 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 19

Conread position: 244-552
Cow position: chr7:37416658-37416961 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 205
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 47, 19

Conread position: 253-526
Cow position: chr7:38536164-38536436 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 200
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 41, 20

Conread position: 253-559
Cow position: chr7:36084977-36085287 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 79

Conread position: 257-541
Cow position: chr7:41870278-41869999 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 44

Conread position: 257-558
Cow position: chr7:20307138-20306841 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 210
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 44, 36

Conread position: 257-564
Cow position: chr7:19925164-19924859 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 200

Conread position: 257-564
Cow position: chr7:24055940-24056242 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 206
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 35, 44

Conread position: 257-564
Cow position: chr7:51084269-51084573 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 204
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 60, 38

Conread position: 258-524
Cow position: chr7:35297946-35297683 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 192

Conread position: 260-564
Cow position: chr7:45949498-45949192 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 210

Conread position: 261-558
Cow position: chr7:21976084-21975786 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 208

Conread position: 261-564
Cow position: chr7:68436391-68436090 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 100

Conread position: 270-564
Cow position: chr7:51911691-51911398 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 200

Conread position: 276-563
Cow position: chr7:11446222-11446510 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 77

Conread position: 276-564
Cow position: chr7:23816297-23816015 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 169
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 75, 0

Conread position: 316-564
Cow position: chr7:993943-994191 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 151

Conread position: 327-564
Cow position: chr7:6489581-6489355 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 179
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 37, 0

Conread position: 334-564
Cow position: chr7:23835849-23836077 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 159
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 33, 44

Conread position: 352-564
Cow position: chr7:1611455-1611253 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 95, 0

Conread position: 372-562
Cow position: chr7:33406478-33406289 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 160, 94

Show alignments to all cow chromosomes.