Cow genome map
| Conread name: | raor032_o5.y1 |
| Conread position: | 1-218 |
| Cow position: | chr19:20635237-20635020 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 64, 57 |
| Conread position: | 1-272 |
| Cow position: | chr19:14948323-14948052 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-282 |
| Cow position: | chr19:14940804-14941085 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 74, 66 |
| Conread position: | 1-397 |
| Cow position: | chr19:23614500-23614896 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 57 |
| Conread position: | 1-401 |
| Cow position: | chr19:14959593-14959203 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 72, 57 |
| Conread position: | 1-405 |
| Cow position: | chr19:23597257-23597662 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 314 |
| Conread position: | 1-409 |
| Cow position: | chr19:23649698-23650106 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-409 |
| Cow position: | chr19:23649950-23650358 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 334, 307 |
| Conread position: | 1-429 |
| Cow position: | chr19:23613576-23614004 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 313 |
| Conread position: | 1-431 |
| Cow position: | chr19:43570164-43569734 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 307 |
| Conread position: | 1-436 |
| Cow position: | chr19:14940048-14940483 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-436 |
| Cow position: | chr19:14940384-14940819 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-436 |
| Cow position: | chr19:23613996-23614431 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 57 |
| Conread position: | 1-436 |
| Cow position: | chr19:23649446-23649881 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 307 |
| Conread position: | 2-431 |
| Cow position: | chr19:43570247-43569818 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-404 |
| Cow position: | chr19:23614586-23614987 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 55 |
| Conread position: | 3-407 |
| Cow position: | chr19:14959827-14959439 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 257 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 89, 14 |
| Conread position: | 3-408 |
| Cow position: | chr19:14916025-14916425 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 275, 108 |
| Conread position: | 3-436 |
| Cow position: | chr19:14960413-14959982 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 0 |
| Conread position: | 4-402 |
| Cow position: | chr19:20677678-20678076 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 79, 66 |
| Conread position: | 4-404 |
| Cow position: | chr19:23614419-23614819 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-420 |
| Cow position: | chr19:23614755-23615171 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 272 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 154, 143 |
| Conread position: | 4-431 |
| Cow position: | chr19:23614083-23614510 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 54 |
| Conread position: | 5-289 |
| Cow position: | chr19:23597429-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-369 |
| Cow position: | chr19:23650122-23650486 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 63, 53 |
| Conread position: | 5-408 |
| Cow position: | chr19:20677511-20677914 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 66 |
| Conread position: | 5-419 |
| Cow position: | chr19:23650038-23650452 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 53 |
| Conread position: | 5-431 |
| Cow position: | chr19:23613664-23614090 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 53 |
| Conread position: | 5-433 |
| Cow position: | chr19:23649786-23650214 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 272 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-436 |
| Cow position: | chr19:14959337-14958921 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 277 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 108, 32 |
| Conread position: | 6-318 |
| Cow position: | chr19:14960076-14959767 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 59, 52 |
| Conread position: | 6-436 |
| Cow position: | chr19:14940557-14940987 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 280 |
| Conread position: | 7-278 |
| Cow position: | chr19:14959098-14958827 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-297 |
| Cow position: | chr19:14959176-14958892 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 7-375 |
| Cow position: | chr19:20678437-20678802 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 7-386 |
| Cow position: | chr19:20635399-20635020 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 252 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 96, 88 |
| Conread position: | 7-389 |
| Cow position: | chr19:23597347-23597730 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 361, 0 |
| Conread position: | 7-403 |
| Cow position: | chr19:20678017-20678413 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-403 |
| Cow position: | chr19:23614254-23614650 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-403 |
| Cow position: | chr19:23649872-23650268 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-404 |
| Cow position: | chr19:20635483-20635086 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 52 |
| Conread position: | 7-406 |
| Cow position: | chr19:20677849-20678248 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 228, 236 |
| Conread position: | 7-408 |
| Cow position: | chr19:14960241-14959842 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 92 |
| Conread position: | 7-409 |
| Cow position: | chr19:14940642-14941044 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 51 |
| Conread position: | 7-410 |
| Cow position: | chr19:14940222-14940625 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-428 |
| Cow position: | chr19:14940306-14940727 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 323 |
| Conread position: | 7-431 |
| Cow position: | chr19:23613834-23614258 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 220 |
| Conread position: | 7-431 |
| Cow position: | chr19:23613918-23614342 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 399, 413 |
| Conread position: | 7-433 |
| Cow position: | chr19:14948484-14948059 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 273 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 108, 84 |
| Conread position: | 7-434 |
| Cow position: | chr19:23613414-23613841 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 146 |
| Conread position: | 7-436 |
| Cow position: | chr19:14960325-14959898 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 172 |
| Conread position: | 7-436 |
| Cow position: | chr19:23597095-23597524 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 301 |
| Conread position: | 7-436 |
| Cow position: | chr19:23613498-23613927 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 51 |
| Conread position: | 7-436 |
| Cow position: | chr19:23613750-23614179 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 301 |
| Conread position: | 7-436 |
| Cow position: | chr19:23614338-23614767 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 51 |
| Conread position: | 7-436 |
| Cow position: | chr19:23614674-23615103 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 230 |
| Conread position: | 11-407 |
| Cow position: | chr19:23596934-23597327 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 314, 101 |
| Conread position: | 11-419 |
| Cow position: | chr19:23649624-23650032 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 324 |
| Conread position: | 11-422 |
| Cow position: | chr19:14948397-14947986 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 275 |
| Conread position: | 11-436 |
| Cow position: | chr19:14940478-14940903 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-404 |
| Cow position: | chr19:20635646-20635254 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 92, 82 |
| Conread position: | 12-405 |
| Cow position: | chr19:20678190-20678583 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 141 |
| Conread position: | 12-436 |
| Cow position: | chr19:14940143-14940567 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 279 |
| Conread position: | 13-401 |
| Cow position: | chr19:20678275-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-404 |
| Cow position: | chr19:20635555-20635170 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 295 |
| Conread position: | 25-404 |
| Cow position: | chr19:14939988-14940367 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 250 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 265, 257 |
| Conread position: | 28-434 |
| Cow position: | chr19:23649389-23649795 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-436 |
| Cow position: | chr19:23613351-23613759 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 196 |
| Conread position: | 29-436 |
| Cow position: | chr19:23596868-23597272 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 252 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 261, 164 |
| Conread position: | 52-436 |
| Cow position: | chr19:14960448-14960066 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 256 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 64, 56 |
| Conread position: | 81-403 |
| Cow position: | chr19:20677671-20677993 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 248, 234 |
| Conread position: | 90-403 |
| Cow position: | chr19:14959670-14959359 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 62, 23 |
| Conread position: | 92-436 |
| Cow position: | chr19:43570398-43570065 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 244, 5 |
| Conread position: | 94-406 |
| Cow position: | chr19:23596849-23597158 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 22, 14 |
| Conread position: | 107-434 |
| Cow position: | chr19:14960477-14960150 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 110-411 |
| Cow position: | chr19:14915962-14916263 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 33, 166 |
| Conread position: | 112-408 |
| Cow position: | chr19:23649305-23649601 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 112-436 |
| Cow position: | chr19:14939991-14940315 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 214, 203 |
| Conread position: | 115-403 |
| Cow position: | chr19:20635710-20635423 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 205, 9 |
Show alignments to all cow chromosomes.