Cow genome map
| Conread name: | raor032_o5.y1 |
| Conread position: | 1-318 |
| Cow position: | chr23:24535735-24535418 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 212 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 64, 57 |
| Conread position: | 1-369 |
| Cow position: | chr23:24654175-24654535 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 272, 231 |
| Conread position: | 1-372 |
| Cow position: | chr23:25626673-25627044 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 66, 57 |
| Conread position: | 1-386 |
| Cow position: | chr23:24626366-24626749 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 314 |
| Conread position: | 1-405 |
| Cow position: | chr23:25660209-25660613 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 177 |
| Conread position: | 1-407 |
| Cow position: | chr23:24560496-24560091 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 373 |
| Conread position: | 1-407 |
| Cow position: | chr23:25660293-25660699 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 57 |
| Conread position: | 1-436 |
| Cow position: | chr23:24560580-24560145 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 57 |
| Conread position: | 2-275 |
| Cow position: | chr23:24639863-24640134 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 86, 56 |
| Conread position: | 2-277 |
| Cow position: | chr23:25660462-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-436 |
| Cow position: | chr23:24639443-24639877 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 56 |
| Conread position: | 3-407 |
| Cow position: | chr23:24522592-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-409 |
| Cow position: | chr23:24639360-24639766 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 29 |
| Conread position: | 3-432 |
| Cow position: | chr23:25626006-25626435 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-436 |
| Cow position: | chr23:24547186-24546753 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 55 |
| Conread position: | 4-401 |
| Cow position: | chr23:25626091-25626488 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 255 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 304, 313 |
| Conread position: | 4-448 |
| Cow position: | chr23:25698511-25698067 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 284 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 188, 208 |
| Conread position: | 5-196 |
| Cow position: | chr23:25660549-25660740 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-373 |
| Cow position: | chr23:25724065-25723698 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 67 |
| Conread position: | 5-431 |
| Cow position: | chr23:25626593-25627019 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-410 |
| Cow position: | chr23:24560659-24560255 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 52 |
| Conread position: | 7-400 |
| Cow position: | chr23:24522069-24521689 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 247 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 298, 100 |
| Conread position: | 7-402 |
| Cow position: | chr23:25698592-25698197 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-408 |
| Cow position: | chr23:24535813-24535411 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 223 |
| Conread position: | 7-409 |
| Cow position: | chr23:25626178-25626580 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 258 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-431 |
| Cow position: | chr23:24547266-24546842 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-431 |
| Cow position: | chr23:24639280-24639704 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 325 |
| Conread position: | 7-431 |
| Cow position: | chr23:25698676-25698252 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 274 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 83, 51 |
| Conread position: | 7-434 |
| Cow position: | chr23:24522336-24521905 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 164, 329 |
| Conread position: | 7-436 |
| Cow position: | chr23:24547098-24546669 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-436 |
| Cow position: | chr23:24639700-24640128 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 308 |
| Conread position: | 7-436 |
| Cow position: | chr23:24654097-24654520 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 220 |
| Conread position: | 7-436 |
| Cow position: | chr23:25626514-25626940 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 71 |
| Conread position: | 11-431 |
| Cow position: | chr23:24522416-24521981 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 276 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 72, 51 |
| Conread position: | 11-436 |
| Cow position: | chr23:24639536-24639961 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 47 |
| Conread position: | 11-436 |
| Cow position: | chr23:24639620-24640045 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 47 |
| Conread position: | 12-401 |
| Cow position: | chr23:24535976-24535588 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 296 |
| Conread position: | 12-436 |
| Cow position: | chr23:24560821-24560397 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 111 |
| Conread position: | 13-370 |
| Cow position: | chr23:25660389-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 277, 269 |
| Conread position: | 15-436 |
| Cow position: | chr23:24522745-24522327 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 272 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 315, 140 |
| Conread position: | 16-436 |
| Cow position: | chr23:24560733-24560313 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-411 |
| Cow position: | chr23:24522823-24522436 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 261 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 125, 36 |
| Conread position: | 21-411 |
| Cow position: | chr23:25660145-25660535 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 293 |
| Conread position: | 21-436 |
| Cow position: | chr23:24626302-24626717 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-436 |
| Cow position: | chr23:24547329-24546921 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-436 |
| Cow position: | chr23:24560889-24560481 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 287 |
| Conread position: | 31-431 |
| Cow position: | chr23:24535873-24535473 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 283 |
| Conread position: | 33-274 |
| Cow position: | chr23:24521972-24521730 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 201, 209 |
| Conread position: | 36-379 |
| Cow position: | chr23:24654042-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 231 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 290, 272 |
| Conread position: | 41-397 |
| Cow position: | chr23:24639230-24639586 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 159 |
| Conread position: | 41-436 |
| Cow position: | chr23:24536031-24535636 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 237 |
| Conread position: | 47-431 |
| Cow position: | chr23:25724107-25723723 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 78-404 |
| Cow position: | chr23:24626275-24626601 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 87-408 |
| Cow position: | chr23:25698680-25698359 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 64, 72 |
| Conread position: | 89-397 |
| Cow position: | chr23:24639194-24639502 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 105-431 |
| Cow position: | chr23:25660145-25660471 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 114-436 |
| Cow position: | chr23:24654036-24654358 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 216 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 127-436 |
| Cow position: | chr23:25724111-25723802 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 161-436 |
| Cow position: | chr23:24626274-24626549 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 18, 22 |
| Conread position: | 176-433 |
| Cow position: | chr23:24639197-24639454 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 149, 138 |
Show alignments to all cow chromosomes.