Cow genome map

Conread name: raor032_o5.y1

Conread position: 1-268
Cow position: chr25:366782-367049 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 171
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 112, 106

Conread position: 1-274
Cow position: chr25:33127943-33128216 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 186
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 63, 57

Conread position: 1-290
Cow position: chr25:346505-346794 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 186
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 114, 106

Conread position: 1-300
Cow position: chr25:33157080-33156782 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 57

Conread position: 1-386
Cow position: chr25:34433497-34433879 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 239
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 314, 109

Conread position: 1-402
Cow position: chr25:33298788-33299189 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 255
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 328, 307

Conread position: 1-403
Cow position: chr25:34732047-34731647 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 236
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 274, 0

Conread position: 1-403
Cow position: chr25:34770151-34769749 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 26

Conread position: 1-405
Cow position: chr25:34769899-34769495 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 57

Conread position: 1-406
Cow position: chr25:34433581-34433980 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 245
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 230, 26

Conread position: 1-407
Cow position: chr25:23420440-23420846 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-409
Cow position: chr25:33157416-33157008 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 57

Conread position: 1-409
Cow position: chr25:34762970-34763375 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 242
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 324, 151

Conread position: 1-419
Cow position: chr25:33305262-33304849 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 156

Conread position: 1-431
Cow position: chr25:34446995-34447425 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-436
Cow position: chr25:34769731-34769296 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 57

Conread position: 1-437
Cow position: chr25:36800520-36800956 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 270
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 112, 98

Conread position: 2-366
Cow position: chr25:33145072-33145436 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 312

Conread position: 2-396
Cow position: chr25:34732382-34731988 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 236
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 2-405
Cow position: chr25:34714092-34714495 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 258
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 55, 63

Conread position: 2-420
Cow position: chr25:34447416-34447826 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 264
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 284, 0

Conread position: 2-432
Cow position: chr25:34713839-34714270 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 259
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 6, 177

Conread position: 3-190
Cow position: chr25:36801770-36801957 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 126
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 3-272
Cow position: chr25:23420610-23420879 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 176
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 3-411
Cow position: chr25:33298958-33299366 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 238

Conread position: 3-411
Cow position: chr25:33299126-33299534 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 236

Conread position: 3-431
Cow position: chr25:33299209-33299638 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 270
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 5, 173

Conread position: 3-431
Cow position: chr25:34732297-34731869 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 251
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 4-402
Cow position: chr25:36801027-36801413 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 254
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 304, 0

Conread position: 4-409
Cow position: chr25:34447334-34447737 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 54

Conread position: 5-198
Cow position: chr25:33128031-33128224 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 135
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 5-318
Cow position: chr25:34732547-34732234 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 196
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 5-395
Cow position: chr25:33298876-33299266 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 320

Conread position: 5-401
Cow position: chr25:34732463-34732067 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 238
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 278, 315

Conread position: 5-405
Cow position: chr25:25652585-25652985 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 235
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 321, 302

Conread position: 5-405
Cow position: chr25:34447167-34447567 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 309

Conread position: 5-409
Cow position: chr25:34769811-34769407 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 53

Conread position: 5-432
Cow position: chr25:34769979-34769552 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 53

Conread position: 5-436
Cow position: chr25:34447083-34447514 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 53

Conread position: 6-366
Cow position: chr25:33127864-33128224 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-419
Cow position: chr25:25652250-25652663 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 242
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 313, 320

Conread position: 7-275
Cow position: chr25:36801690-36801958 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 175
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 7-392
Cow position: chr25:34763060-34763442 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 233
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 318, 61

Conread position: 7-396
Cow position: chr25:36800694-36801083 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 257
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 312, 307

Conread position: 7-402
Cow position: chr25:33299466-33299856 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 255
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 301, 331

Conread position: 7-402
Cow position: chr25:33305901-33305512 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 257
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 312, 61

Conread position: 7-402
Cow position: chr25:36801198-36801581 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 258
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 328, 142

Conread position: 7-404
Cow position: chr25:33157494-33157097 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 14

Conread position: 7-423
Cow position: chr25:34447253-34447669 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 223

Conread position: 7-436
Cow position: chr25:33127781-33128210 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 7-436
Cow position: chr25:33299298-33299727 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 307

Conread position: 7-436
Cow position: chr25:33305339-33304914 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 282
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 60, 21

Conread position: 11-190
Cow position: chr25:34763562-34763741 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 11-228
Cow position: chr25:34769469-34769252 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 142
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 11-272
Cow position: chr25:326564-326825 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 177
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 11-290
Cow position: chr25:22235980-22236259 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 188
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 235, 241

Conread position: 11-312
Cow position: chr25:36801610-36801911 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 201
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 11-395
Cow position: chr25:36800950-36801334 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 247
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 72, 57

Conread position: 11-397
Cow position: chr25:33157154-33156767 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 159

Conread position: 11-402
Cow position: chr25:33298630-33299021 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 260
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 272, 259

Conread position: 11-409
Cow position: chr25:34763229-34763624 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 247
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 309, 218

Conread position: 11-436
Cow position: chr25:33306314-33305892 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 280
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 241, 27

Conread position: 12-229
Cow position: chr25:18642103-18641883 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 153
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 34, 46

Conread position: 12-404
Cow position: chr25:33157237-33156845 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 13-315
Cow position: chr25:33305731-33305431 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 194
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 142, 12

Conread position: 13-409
Cow position: chr25:22235898-22236294 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 236
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 295, 323

Conread position: 14-409
Cow position: chr25:34762899-34763291 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 243
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 306, 236

Conread position: 17-436
Cow position: chr25:23420372-23420791 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 25-357
Cow position: chr25:326494-326826 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 218
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 145, 152

Conread position: 25-403
Cow position: chr25:36800880-36801258 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 245
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 209, 214

Conread position: 25-408
Cow position: chr25:33144846-33145226 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 242
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 39, 33

Conread position: 25-428
Cow position: chr25:36801372-36801775 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 266
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 58, 46

Conread position: 25-431
Cow position: chr25:34732611-34732205 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 250
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 27-228
Cow position: chr25:34433019-34433220 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 133
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 28-312
Cow position: chr25:366725-367009 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 183
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 143, 154

Conread position: 28-402
Cow position: chr25:36801543-36801917 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 288

Conread position: 28-410
Cow position: chr25:36800463-36800845 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 235
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 39, 47

Conread position: 28-419
Cow position: chr25:33298479-33298870 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 249
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 291, 302

Conread position: 28-431
Cow position: chr25:34446938-34447341 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 252
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 29-437
Cow position: chr25:33305961-33305561 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 255
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 206, 16

Conread position: 30-402
Cow position: chr25:36800633-36801005 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 238
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 47, 38

Conread position: 30-436
Cow position: chr25:33298565-33298971 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 209

Conread position: 31-397
Cow position: chr25:22235831-22236199 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 241
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 9, 268

Conread position: 31-429
Cow position: chr25:34714037-34714435 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 250
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 118, 111

Conread position: 34-435
Cow position: chr25:346454-346855 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 249
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 137, 148

Conread position: 34-435
Cow position: chr25:33145023-33145421 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 256
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 15, 0

Conread position: 41-207
Cow position: chr25:438386-438220 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 116
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 43-428
Cow position: chr25:33127733-33128118 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 52-409
Cow position: chr25:33127659-33128015 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 10

Conread position: 62-404
Cow position: chr25:33157523-33157181 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 229
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 258, 236

Conread position: 63-420
Cow position: chr25:23420334-23420691 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 167

Conread position: 82-408
Cow position: chr25:18642201-18641872 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 213
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 100, 89

Conread position: 85-432
Cow position: chr25:34433497-34433841 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 229
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 167, 110

Conread position: 90-429
Cow position: chr25:36801521-36801860 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 222
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 235, 226

Conread position: 95-317
Cow position: chr25:34433003-34433224 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 73, 80

Conread position: 103-436
Cow position: chr25:326486-326821 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 218
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 14, 206

Conread position: 105-401
Cow position: chr25:34732615-34732319 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 188
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 111-403
Cow position: chr25:22235828-22236120 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 181
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 111-436
Cow position: chr25:33298478-33298803 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 203
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 88, 81

Conread position: 112-383
Cow position: chr25:34762829-34763100 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 172
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 213, 196

Conread position: 112-436
Cow position: chr25:34446938-34447262 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 213
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 213, 196

Conread position: 124-431
Cow position: chr25:23420311-23420618 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 215
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 171, 162

Conread position: 132-401
Cow position: chr25:326942-327212 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 181
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 6, 119

Conread position: 160-431
Cow position: chr25:34770160-34769889 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 181
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 52, 35

Conread position: 180-431
Cow position: chr25:33127703-33127953 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 173
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 145, 9

Conread position: 196-436
Cow position: chr25:366725-366965 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 157
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 119, 112

Show alignments to all cow chromosomes.