Cow genome map
| Conread name: | raor032_o5.y1 |
| Conread position: | 1-275 |
| Cow position: | chr7:42878547-42878273 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 82, 57 |
| Conread position: | 1-378 |
| Cow position: | chr7:1015080-1015457 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 244 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-405 |
| Cow position: | chr7:3180090-3180494 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-410 |
| Cow position: | chr7:42879135-42878727 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 314 |
| Conread position: | 1-436 |
| Cow position: | chr7:1014414-1014843 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 1-436 |
| Cow position: | chr7:3179922-3180357 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 239 |
| Conread position: | 1-436 |
| Cow position: | chr7:42879219-42878784 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 298 |
| Conread position: | 3-358 |
| Cow position: | chr7:11600792-11600437 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 317, 311 |
| Conread position: | 3-409 |
| Cow position: | chr7:18390221-18390627 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-409 |
| Cow position: | chr7:11601126-11600722 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 219 |
| Conread position: | 5-436 |
| Cow position: | chr7:3179842-3180273 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-294 |
| Cow position: | chr7:18390476-18390764 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-397 |
| Cow position: | chr7:11600957-11600566 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 302 |
| Conread position: | 6-409 |
| Cow position: | chr7:18390308-18390711 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 302 |
| Conread position: | 7-234 |
| Cow position: | chr7:1440037-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 65, 51 |
| Conread position: | 7-272 |
| Cow position: | chr7:11434508-11434243 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 84, 64 |
| Conread position: | 7-318 |
| Cow position: | chr7:8325804-8326114 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 62, 82 |
| Conread position: | 7-376 |
| Cow position: | chr7:42878625-42878256 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 219 |
| Conread position: | 7-397 |
| Cow position: | chr7:8324796-8325186 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 258 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 63, 84 |
| Conread position: | 7-401 |
| Cow position: | chr7:1439870-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 56 |
| Conread position: | 7-401 |
| Cow position: | chr7:3179760-3180154 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 51 |
| Conread position: | 7-401 |
| Cow position: | chr7:8242862-8243255 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 86, 55 |
| Conread position: | 7-402 |
| Cow position: | chr7:3180432-3180825 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 308 |
| Conread position: | 7-402 |
| Cow position: | chr7:8277911-8278306 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 83, 64 |
| Conread position: | 7-402 |
| Cow position: | chr7:8325048-8325443 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 85, 64 |
| Conread position: | 7-403 |
| Cow position: | chr7:8243449-8243845 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 62, 84 |
| Conread position: | 7-403 |
| Cow position: | chr7:8324880-8325276 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 85 |
| Conread position: | 7-403 |
| Cow position: | chr7:8325552-8325948 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 257 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 62, 84 |
| Conread position: | 7-404 |
| Cow position: | chr7:8277407-8277804 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 258 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 110, 87 |
| Conread position: | 7-404 |
| Cow position: | chr7:8277743-8278140 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 161, 146 |
| Conread position: | 7-405 |
| Cow position: | chr7:8243030-8243427 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 151, 146 |
| Conread position: | 7-405 |
| Cow position: | chr7:8243617-8244013 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 64, 84 |
| Conread position: | 7-405 |
| Cow position: | chr7:8277323-8277721 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 58, 51 |
| Conread position: | 7-405 |
| Cow position: | chr7:18390141-18390539 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 307 |
| Conread position: | 7-406 |
| Cow position: | chr7:8325636-8326035 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 260 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 58, 51 |
| Conread position: | 7-407 |
| Cow position: | chr7:3180264-3180664 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 51 |
| Conread position: | 7-409 |
| Cow position: | chr7:1015002-1015404 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 66 |
| Conread position: | 7-409 |
| Cow position: | chr7:3180348-3180750 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 51 |
| Conread position: | 7-410 |
| Cow position: | chr7:42878877-42878474 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 308 |
| Conread position: | 7-426 |
| Cow position: | chr7:1439787-1440204 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 272 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 301, 74 |
| Conread position: | 7-433 |
| Cow position: | chr7:1014834-1015260 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 67 |
| Conread position: | 7-436 |
| Cow position: | chr7:1014084-1014513 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 116, 129 |
| Conread position: | 7-436 |
| Cow position: | chr7:8325888-8326314 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 288 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 58, 51 |
| Conread position: | 7-436 |
| Cow position: | chr7:42879045-42878616 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-407 |
| Cow position: | chr7:11434668-11434276 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 265 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 82, 62 |
| Conread position: | 11-401 |
| Cow position: | chr7:1439453-1439844 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 239, 134 |
| Conread position: | 11-402 |
| Cow position: | chr7:3180016-3180407 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 164 |
| Conread position: | 11-404 |
| Cow position: | chr7:1014754-1015147 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 166 |
| Conread position: | 11-404 |
| Cow position: | chr7:11601204-11600811 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-405 |
| Cow position: | chr7:8325136-8325530 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 260 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 60, 80 |
| Conread position: | 11-436 |
| Cow position: | chr7:1014670-1015095 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 63 |
| Conread position: | 12-436 |
| Cow position: | chr7:8325473-8325897 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 273 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 72, 59 |
| Conread position: | 13-403 |
| Cow position: | chr7:3180186-3180576 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 324 |
| Conread position: | 15-436 |
| Cow position: | chr7:1014512-1014927 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 261 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 69, 55 |
| Conread position: | 15-436 |
| Cow position: | chr7:1014926-1015347 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 299 |
| Conread position: | 15-436 |
| Cow position: | chr7:42878701-42878280 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 53 |
| Conread position: | 19-234 |
| Cow position: | chr7:18390573-18390787 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 19-397 |
| Cow position: | chr7:8325312-8325690 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 72, 52 |
| Conread position: | 19-401 |
| Cow position: | chr7:1438240-1438621 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 46, 31 |
| Conread position: | 19-403 |
| Cow position: | chr7:8243545-8243929 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 250 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 49, 73 |
| Conread position: | 19-407 |
| Cow position: | chr7:8278091-8278477 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 72 |
| Conread position: | 19-436 |
| Cow position: | chr7:42879369-42878952 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 296 |
| Conread position: | 21-405 |
| Cow position: | chr7:8243379-8243763 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 251 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 63, 70 |
| Conread position: | 24-433 |
| Cow position: | chr7:8277256-8277665 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 69, 43 |
| Conread position: | 25-312 |
| Cow position: | chr7:1438414-1438702 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 283, 0 |
| Conread position: | 28-383 |
| Cow position: | chr7:1014273-1014628 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-431 |
| Cow position: | chr7:42879276-42878873 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-403 |
| Cow position: | chr7:18389995-18390369 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 88, 105 |
| Conread position: | 30-405 |
| Cow position: | chr7:8324735-8325110 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 251 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 55, 41 |
| Conread position: | 41-436 |
| Cow position: | chr7:3179710-3180105 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 255 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 87-405 |
| Cow position: | chr7:1014662-1014980 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 90-445 |
| Cow position: | chr7:1439448-1439805 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 20, 33 |
| Conread position: | 112-436 |
| Cow position: | chr7:1014273-1014597 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 300, 291 |
| Conread position: | 171-436 |
| Cow position: | chr7:1439445-1439713 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 154, 143 |
| Conread position: | 174-436 |
| Cow position: | chr7:42879382-42879120 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 36 |
Show alignments to all cow chromosomes.