Cow genome map
| Conread name: | rcbe16_h13.y1 |
| Conread position: | 1-217 |
| Cow position: | chr12:17007780-17008003 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 79, 176 |
| Conread position: | 1-225 |
| Cow position: | chr12:45630223-45629995 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 76, 19 |
| Conread position: | 1-230 |
| Cow position: | chr12:23446013-23446244 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 148 |
| Conread position: | 1-255 |
| Cow position: | chr12:29969160-29969430 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 76, 175 |
| Conread position: | 1-255 |
| Cow position: | chr12:35218820-35218556 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 61, 74 |
| Conread position: | 1-260 |
| Cow position: | chr12:2711069-2711348 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 64, 182 |
| Conread position: | 1-268 |
| Cow position: | chr12:5800614-5800897 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 64, 11 |
| Conread position: | 1-273 |
| Cow position: | chr12:3196834-3197123 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 75, 175 |
| Conread position: | 1-436 |
| Cow position: | chr12:34673748-34673292 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 151 |
| Conread position: | 1-458 |
| Cow position: | chr12:6469462-6468990 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 304 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 83, 68 |
| Conread position: | 1-464 |
| Cow position: | chr12:29484306-29483809 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 25 |
| Conread position: | 1-476 |
| Cow position: | chr12:7977634-7978125 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 76 |
| Conread position: | 1-486 |
| Cow position: | chr12:30919017-30919523 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 349 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 75, 63 |
| Conread position: | 1-486 |
| Cow position: | chr12:42602655-42602146 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 141 |
| Conread position: | 1-488 |
| Cow position: | chr12:42966582-42967094 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 151 |
| Conread position: | 1-489 |
| Cow position: | chr12:11056474-11056977 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 344 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 155, 80 |
| Conread position: | 1-491 |
| Cow position: | chr12:36501365-36500847 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 350 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 79, 11 |
| Conread position: | 1-493 |
| Cow position: | chr12:19696993-19697498 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 341 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 76, 91 |
| Conread position: | 1-494 |
| Cow position: | chr12:9142975-9143490 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 36 |
| Conread position: | 1-495 |
| Cow position: | chr12:35368211-35368749 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 360 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 75, 40 |
| Conread position: | 2-295 |
| Cow position: | chr12:7108761-7109079 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 235 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 49, 186 |
| Conread position: | 2-414 |
| Cow position: | chr12:27803462-27803024 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 299 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 82, 115 |
| Conread position: | 3-265 |
| Cow position: | chr12:37514648-37514379 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 77, 177 |
| Conread position: | 4-475 |
| Cow position: | chr12:47928800-47929287 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 48 |
| Conread position: | 5-205 |
| Cow position: | chr12:23490651-23490446 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 5-273 |
| Cow position: | chr12:3511278-3511553 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 102, 76 |
| Conread position: | 6-214 |
| Cow position: | chr12:31949372-31949586 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 71, 83 |
| Conread position: | 6-271 |
| Cow position: | chr12:33297441-33297712 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 62, 130 |
| Conread position: | 8-471 |
| Cow position: | chr12:19125234-19124754 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 166 |
| Conread position: | 9-263 |
| Cow position: | chr12:35718465-35718204 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 92, 72 |
| Conread position: | 9-493 |
| Cow position: | chr12:26869207-26868709 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 20 |
| Conread position: | 10-256 |
| Cow position: | chr12:19420341-19420085 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 67, 46 |
| Conread position: | 20-491 |
| Cow position: | chr12:10895948-10895450 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 159 |
| Conread position: | 20-493 |
| Cow position: | chr12:15121942-15122427 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 124 |
| Conread position: | 23-268 |
| Cow position: | chr12:7919669-7919910 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 42, 155 |
| Conread position: | 25-491 |
| Cow position: | chr12:41216667-41217168 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 331 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 52, 151 |
| Conread position: | 26-217 |
| Cow position: | chr12:15429994-15429794 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 54, 153 |
| Conread position: | 33-265 |
| Cow position: | chr12:27039151-27038904 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 40, 104 |
| Conread position: | 49-263 |
| Cow position: | chr12:31060350-31060119 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 28, 17 |
| Conread position: | 56-293 |
| Cow position: | chr12:15938628-15938389 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 24, 120 |
| Conread position: | 61-263 |
| Cow position: | chr12:18937030-18937249 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 43, 116 |
| Conread position: | 69-372 |
| Cow position: | chr12:4116156-4116473 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 36, 81 |
| Conread position: | 73-486 |
| Cow position: | chr12:18572292-18572722 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 294 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 30, 108 |
| Conread position: | 74-497 |
| Cow position: | chr12:30745375-30745822 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 310 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 83, 18 |
| Conread position: | 75-485 |
| Cow position: | chr12:4342064-4341645 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 103 |
| Conread position: | 84-268 |
| Cow position: | chr12:22261148-22260962 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 85-253 |
| Cow position: | chr12:34466329-34466165 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 50 |
| Conread position: | 89-491 |
| Cow position: | chr12:12199234-12198809 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 280 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 14, 61 |
| Conread position: | 91-256 |
| Cow position: | chr12:12017550-12017729 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 31, 85 |
| Conread position: | 92-269 |
| Cow position: | chr12:44905311-44905507 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 13, 58 |
| Conread position: | 92-435 |
| Cow position: | chr12:16289203-16289551 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 12, 87 |
| Conread position: | 97-268 |
| Cow position: | chr12:36954692-36954512 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 60, 9 |
| Conread position: | 100-491 |
| Cow position: | chr12:43788715-43789126 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 273 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 56, 74 |
| Conread position: | 103-269 |
| Cow position: | chr12:17495504-17495328 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 54, 71 |
| Conread position: | 104-493 |
| Cow position: | chr12:30805543-30805959 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 5, 74 |
| Conread position: | 109-424 |
| Cow position: | chr12:3055830-3056168 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 36, 66 |
| Conread position: | 109-486 |
| Cow position: | chr12:45820663-45820268 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 263 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 48, 65 |
| Conread position: | 112-268 |
| Cow position: | chr12:9229785-9229620 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 45, 59 |
| Conread position: | 115-268 |
| Cow position: | chr12:40307396-40307560 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 42, 59 |
| Conread position: | 118-254 |
| Cow position: | chr12:6687572-6687711 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 57 |
| Conread position: | 120-471 |
| Cow position: | chr12:18040887-18040525 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 22, 55 |
| Conread position: | 125-269 |
| Cow position: | chr12:43551574-43551424 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 28, 49 |
| Conread position: | 126-268 |
| Cow position: | chr12:40110100-40110248 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 31, 48 |
| Conread position: | 131-487 |
| Cow position: | chr12:19502704-19502329 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 26, 43 |
| Conread position: | 131-493 |
| Cow position: | chr12:18388566-18388184 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 257 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 27, 43 |
| Conread position: | 198-489 |
| Cow position: | chr12:18103800-18103511 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 25, 8 |
| Conread position: | 206-497 |
| Cow position: | chr12:21779984-21780270 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 10, 43 |
| Conread position: | 212-493 |
| Cow position: | chr12:25280686-25280400 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 37, 137 |
| Conread position: | 254-493 |
| Cow position: | chr12:35241237-35241001 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 13, 62 |
| Conread position: | 262-471 |
| Cow position: | chr12:44733218-44733009 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 27, 49 |
| Conread position: | 262-485 |
| Cow position: | chr12:10942159-10942384 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 28, 83 |
| Conread position: | 262-493 |
| Cow position: | chr12:27563503-27563274 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 30, 54 |
| Conread position: | 262-493 |
| Cow position: | chr12:30662073-30661847 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 30, 43 |
| Conread position: | 263-493 |
| Cow position: | chr12:35123769-35123994 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 28, 41 |
| Conread position: | 264-491 |
| Cow position: | chr12:42254543-42254769 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 28, 67 |
| Conread position: | 264-493 |
| Cow position: | chr12:14222852-14223085 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 25, 214 |
| Conread position: | 342-492 |
| Cow position: | chr12:7457589-7457441 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
Show alignments to all cow chromosomes.