Cow genome map

Conread name: rcbe16_h13.y1

Conread position: 1-210
Cow position: chr13:9974700-9974918 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 161
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 75, 180

Conread position: 1-237
Cow position: chr13:562771-563016 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 178
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 76, 179

Conread position: 1-254
Cow position: chr13:26382864-26383137 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 205
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 60, 179

Conread position: 1-255
Cow position: chr13:25453536-25453263 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 209
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 81, 178

Conread position: 1-255
Cow position: chr13:36264330-36264060 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 179

Conread position: 1-256
Cow position: chr13:20649622-20649883 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 194
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 83, 45

Conread position: 1-256
Cow position: chr13:52585659-52585925 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 197
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 76, 43

Conread position: 1-260
Cow position: chr13:20571092-20570822 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 210
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 24, 161

Conread position: 1-262
Cow position: chr13:21988739-21989016 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 209
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 79, 179

Conread position: 1-263
Cow position: chr13:2414390-2414118 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 199
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 98, 150

Conread position: 1-263
Cow position: chr13:11834117-11834385 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 188
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 79, 153

Conread position: 1-263
Cow position: chr13:27027412-27027685 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 206
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 154, 22

Conread position: 1-263
Cow position: chr13:60690353-60690637 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 212
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 79, 138

Conread position: 1-279
Cow position: chr13:60974431-60974157 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 209
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 104, 55

Conread position: 1-396
Cow position: chr13:17800440-17800011 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 303
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 79, 85

Conread position: 1-457
Cow position: chr13:185870-185408 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 317
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 79, 137

Conread position: 1-465
Cow position: chr13:31814231-31813743 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 105

Conread position: 1-481
Cow position: chr13:20879470-20879971 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 169

Conread position: 1-486
Cow position: chr13:15869483-15868963 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 176

Conread position: 1-486
Cow position: chr13:51941095-51940587 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 176

Conread position: 1-491
Cow position: chr13:52057904-52057405 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 177

Conread position: 1-491
Cow position: chr13:52894493-52893993 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 346
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 145, 80

Conread position: 1-492
Cow position: chr13:12875618-12876129 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 180

Conread position: 1-493
Cow position: chr13:13321142-13320643 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 22

Conread position: 1-493
Cow position: chr13:34263016-34263527 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 112

Conread position: 1-493
Cow position: chr13:60508757-60509278 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 80

Conread position: 1-497
Cow position: chr13:20175105-20174580 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 178

Conread position: 1-497
Cow position: chr13:20605753-20606279 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 178

Conread position: 2-362
Cow position: chr13:20863658-20864043 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 274
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 78, 16

Conread position: 3-252
Cow position: chr13:20440237-20440489 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 175

Conread position: 3-261
Cow position: chr13:32151925-32151657 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 197
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 74, 32

Conread position: 3-290
Cow position: chr13:46516426-46516132 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 170

Conread position: 3-418
Cow position: chr13:21708545-21708119 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 176

Conread position: 4-493
Cow position: chr13:6974528-6974008 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 356
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 72, 181

Conread position: 5-258
Cow position: chr13:16015177-16014910 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 182

Conread position: 6-291
Cow position: chr13:43629402-43629706 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 223
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 15, 99

Conread position: 8-477
Cow position: chr13:57769666-57770129 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 307
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 70, 61

Conread position: 8-493
Cow position: chr13:21276215-21275701 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 172

Conread position: 9-256
Cow position: chr13:41360107-41359845 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 189
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 104, 167

Conread position: 9-265
Cow position: chr13:16292899-16292632 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 201
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 71, 39

Conread position: 9-268
Cow position: chr13:60429724-60429990 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 17

Conread position: 9-489
Cow position: chr13:52637639-52637147 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 107

Conread position: 10-489
Cow position: chr13:8362389-8362897 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 170

Conread position: 14-211
Cow position: chr13:28570190-28569982 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 165
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 62, 0

Conread position: 25-493
Cow position: chr13:32017181-32017670 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 153

Conread position: 30-279
Cow position: chr13:33517571-33517848 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 207
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 47, 165

Conread position: 30-471
Cow position: chr13:34508213-34507750 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 149

Conread position: 32-425
Cow position: chr13:19138772-19138350 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 297
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 46, 144

Conread position: 33-255
Cow position: chr13:11260584-11260366 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 166
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 49, 139

Conread position: 42-262
Cow position: chr13:16833764-16833982 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 163
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 12, 111

Conread position: 42-271
Cow position: chr13:21524750-21524507 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 188
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 35, 115

Conread position: 56-236
Cow position: chr13:37382122-37381934 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 152
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 21, 124

Conread position: 56-258
Cow position: chr13:9125984-9125765 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 163
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 24, 123

Conread position: 75-457
Cow position: chr13:18989995-18989601 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 283
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 30, 102

Conread position: 78-279
Cow position: chr13:18491883-18491676 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 8, 25

Conread position: 84-256
Cow position: chr13:17994202-17994024 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 150
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 73, 19

Conread position: 84-265
Cow position: chr13:37497478-37497665 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 17, 67

Conread position: 85-478
Cow position: chr13:13089303-13088887 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 297
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 20, 65

Conread position: 85-486
Cow position: chr13:51821608-51822021 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 278
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 29, 96

Conread position: 88-493
Cow position: chr13:33256773-33256343 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 89

Conread position: 95-436
Cow position: chr13:18244125-18243761 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 256
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 12, 81

Conread position: 98-249
Cow position: chr13:22115969-22115815 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 128
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 21, 51

Conread position: 100-250
Cow position: chr13:14576928-14576772 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 133
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 48, 53

Conread position: 100-494
Cow position: chr13:15041210-15041629 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 295
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 57, 74

Conread position: 108-489
Cow position: chr13:20784842-20784436 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 281
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 47, 66

Conread position: 109-262
Cow position: chr13:38012616-38012446 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 135
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 10, 67

Conread position: 109-364
Cow position: chr13:19262049-19261797 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 183
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 49, 6

Conread position: 109-419
Cow position: chr13:61166202-61166534 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 229
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 13, 68

Conread position: 109-436
Cow position: chr13:48037873-48037522 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 249
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 48, 66

Conread position: 110-314
Cow position: chr13:9107827-9107617 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 163
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 47, 31

Conread position: 110-486
Cow position: chr13:23166845-23167250 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 275
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 45, 63

Conread position: 110-491
Cow position: chr13:23479281-23478876 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 284
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 47, 64

Conread position: 112-254
Cow position: chr13:34299394-34299537 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 91, 59

Conread position: 112-256
Cow position: chr13:58719273-58719424 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 45, 62

Conread position: 112-270
Cow position: chr13:56148789-56148620 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 47, 35

Conread position: 112-290
Cow position: chr13:29122593-29122776 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 142
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 44, 5

Conread position: 112-493
Cow position: chr13:37985501-37985902 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 271
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 45, 35

Conread position: 115-461
Cow position: chr13:11460870-11460507 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 240
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 31, 57

Conread position: 116-249
Cow position: chr13:44323149-44323003 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 32, 59

Conread position: 118-268
Cow position: chr13:30693945-30693790 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 38, 56

Conread position: 118-268
Cow position: chr13:48251748-48251901 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 123
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 39, 56

Conread position: 118-493
Cow position: chr13:45022964-45023377 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 298
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 29, 21

Conread position: 120-363
Cow position: chr13:9570223-9569976 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 179
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 34, 52

Conread position: 122-252
Cow position: chr13:20466055-20466184 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 99
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 137-489
Cow position: chr13:33054170-33054523 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 240
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 20, 37

Conread position: 178-493
Cow position: chr13:52055414-52055748 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 228
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 26, 162

Conread position: 262-479
Cow position: chr13:19188373-19188157 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 148
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 30, 66

Conread position: 262-481
Cow position: chr13:25926863-25926642 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 151
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 75, 53

Conread position: 262-483
Cow position: chr13:55727973-55727754 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 157
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 30, 48

Conread position: 262-486
Cow position: chr13:19279169-19278945 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 161
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 30, 58

Conread position: 262-487
Cow position: chr13:18172411-18172186 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 157
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 30, 43

Conread position: 262-489
Cow position: chr13:40491286-40491058 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 157
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 180, 30

Conread position: 262-493
Cow position: chr13:20137897-20137663 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 30, 78

Conread position: 262-493
Cow position: chr13:37592870-37593105 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 162
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 32, 84

Conread position: 262-493
Cow position: chr13:54582949-54582720 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 27, 53

Conread position: 262-494
Cow position: chr13:19320608-19320373 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 159
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 41, 65

Conread position: 263-454
Cow position: chr13:8652367-8652561 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 134
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 28, 66

Conread position: 266-491
Cow position: chr13:10924844-10925075 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 166
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 26, 173

Conread position: 266-493
Cow position: chr13:54128524-54128753 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 158
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 21, 76

Conread position: 267-477
Cow position: chr13:17563804-17563598 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 149
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 25, 53

Conread position: 267-493
Cow position: chr13:18995194-18994968 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 155
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 25, 81

Conread position: 289-478
Cow position: chr13:17822908-17823093 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 56, 77

Conread position: 289-491
Cow position: chr13:52640907-52641104 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 90, 24

Conread position: 337-488
Cow position: chr13:50768594-50768446 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 41, 0

Show alignments to all cow chromosomes.