Cow genome map

Conread name: rcbe16_h13.y1

Conread position: 1-249
Cow position: chr18:17004841-17005104 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 202
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 76, 103

Conread position: 1-256
Cow position: chr18:42747174-42747450 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 210
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 77, 160

Conread position: 1-258
Cow position: chr18:24021978-24022231 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 186
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 76, 97

Conread position: 1-260
Cow position: chr18:3098726-3098460 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 200
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 48, 138

Conread position: 1-268
Cow position: chr18:19159376-19159103 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 70

Conread position: 1-268
Cow position: chr18:49655303-49655574 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 199
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 70, 176

Conread position: 1-275
Cow position: chr18:52635494-52635209 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 210
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 76, 151

Conread position: 1-306
Cow position: chr18:49543077-49543382 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 215
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 156, 22

Conread position: 1-436
Cow position: chr18:15172632-15173066 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 22

Conread position: 1-465
Cow position: chr18:11322176-11322678 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 334
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 77, 181

Conread position: 1-465
Cow position: chr18:28658321-28657829 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 330
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 96, 80

Conread position: 1-475
Cow position: chr18:9007735-9008217 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 180

Conread position: 1-490
Cow position: chr18:22121293-22120778 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 119

Conread position: 1-491
Cow position: chr18:39002208-39001710 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 179

Conread position: 1-493
Cow position: chr18:22569440-22568960 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 175

Conread position: 1-493
Cow position: chr18:43284164-43283647 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 140

Conread position: 2-263
Cow position: chr18:43563816-43564095 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 202
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 92, 79

Conread position: 2-270
Cow position: chr18:16045411-16045133 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 206
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 75, 21

Conread position: 2-455
Cow position: chr18:31672913-31672441 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 62

Conread position: 3-263
Cow position: chr18:51179155-51178882 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 199
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 81, 40

Conread position: 3-268
Cow position: chr18:6881740-6881480 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 191
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 153, 80

Conread position: 3-427
Cow position: chr18:14815746-14815304 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 176

Conread position: 3-458
Cow position: chr18:20125895-20126380 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 323
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 77, 173

Conread position: 3-483
Cow position: chr18:7359333-7359843 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 354
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 73, 12

Conread position: 3-491
Cow position: chr18:9029215-9029718 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 336
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 97, 75

Conread position: 3-493
Cow position: chr18:52684984-52684495 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 313
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 26, 62

Conread position: 5-493
Cow position: chr18:51756691-51757201 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 145

Conread position: 6-256
Cow position: chr18:26937319-26937583 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 199
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 78, 178

Conread position: 6-290
Cow position: chr18:33272538-33272841 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 169

Conread position: 6-433
Cow position: chr18:55552557-55553017 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 173

Conread position: 8-263
Cow position: chr18:39709484-39709754 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 171

Conread position: 8-268
Cow position: chr18:36458528-36458801 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 171

Conread position: 9-220
Cow position: chr18:48818656-48818435 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 162
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 68, 31

Conread position: 9-263
Cow position: chr18:21528001-21528259 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 190
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 68, 12

Conread position: 10-465
Cow position: chr18:20641884-20641414 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 307
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 66, 86

Conread position: 10-493
Cow position: chr18:45904295-45903789 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 349
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 64, 56

Conread position: 13-268
Cow position: chr18:23447479-23447213 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 64, 79

Conread position: 20-256
Cow position: chr18:4624823-4624577 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 181
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 57, 158

Conread position: 20-271
Cow position: chr18:18340347-18340098 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 194
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 56, 118

Conread position: 20-419
Cow position: chr18:5486857-5487278 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 295
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 60, 159

Conread position: 23-224
Cow position: chr18:5457646-5457445 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 155
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 53, 94

Conread position: 23-256
Cow position: chr18:30186300-30186057 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 179
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 61, 159

Conread position: 24-491
Cow position: chr18:39662387-39662886 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 164

Conread position: 26-255
Cow position: chr18:49665545-49665300 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 185
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 51, 102

Conread position: 38-217
Cow position: chr18:41270711-41270900 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 152
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 39, 100

Conread position: 43-480
Cow position: chr18:4672956-4673401 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 293
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 37, 133

Conread position: 56-491
Cow position: chr18:51826933-51827384 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 306
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 21, 127

Conread position: 57-432
Cow position: chr18:4078451-4078843 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 266
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 20, 111

Conread position: 85-268
Cow position: chr18:43065185-43065383 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 148
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 72, 89

Conread position: 87-480
Cow position: chr18:19273424-19272999 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 296
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 26, 50

Conread position: 90-387
Cow position: chr18:44549226-44548908 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 227
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 67, 84

Conread position: 100-439
Cow position: chr18:44484067-44483717 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 253
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 60, 73

Conread position: 105-491
Cow position: chr18:4625596-4625996 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 263
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 95, 49

Conread position: 108-474
Cow position: chr18:39875561-39875169 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 281
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 16, 68

Conread position: 109-431
Cow position: chr18:25206492-25206140 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 241
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 45, 65

Conread position: 110-254
Cow position: chr18:47931159-47931010 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 47, 64

Conread position: 110-268
Cow position: chr18:4649034-4648873 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 48, 64

Conread position: 110-268
Cow position: chr18:16258569-16258732 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 47, 64

Conread position: 112-263
Cow position: chr18:13359765-13359928 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 132
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 45, 62

Conread position: 112-436
Cow position: chr18:5766132-5766462 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 228
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 46, 67

Conread position: 113-268
Cow position: chr18:2592469-2592300 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 44, 62

Conread position: 115-478
Cow position: chr18:56159171-56159556 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 260
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 42, 53

Conread position: 115-491
Cow position: chr18:42455314-42454914 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 275
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 98, 43

Conread position: 116-268
Cow position: chr18:16847405-16847560 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 40, 58

Conread position: 116-475
Cow position: chr18:36231004-36230635 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 250
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 42, 58

Conread position: 117-211
Cow position: chr18:52387969-52387876 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 87
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 47, 19

Conread position: 117-497
Cow position: chr18:31082612-31082232 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 251
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 40, 66

Conread position: 118-268
Cow position: chr18:268102-267947 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 124
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 37, 56

Conread position: 118-279
Cow position: chr18:4529229-4529388 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 130
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 30, 16

Conread position: 118-465
Cow position: chr18:15614135-15613778 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 241
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 39, 15

Conread position: 120-483
Cow position: chr18:28924121-28923749 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 261
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 28, 48

Conread position: 122-491
Cow position: chr18:21192697-21192307 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 267
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 31, 55

Conread position: 127-271
Cow position: chr18:5247801-5247646 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 30, 47

Conread position: 141-465
Cow position: chr18:7952378-7952720 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 229
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 17, 33

Conread position: 141-493
Cow position: chr18:4758293-4757923 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 254
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 72, 30

Conread position: 153-486
Cow position: chr18:22056107-22055768 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 244
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 104, 18

Conread position: 196-494
Cow position: chr18:2619399-2619099 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 195
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 54, 132

Conread position: 221-493
Cow position: chr18:23821995-23821722 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 178
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 71, 49

Conread position: 250-491
Cow position: chr18:21782565-21782794 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 165
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 23, 0

Conread position: 262-471
Cow position: chr18:47511885-47512094 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 147
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 27, 42

Conread position: 262-478
Cow position: chr18:12273537-12273753 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 151
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 30, 74

Conread position: 262-491
Cow position: chr18:39623680-39623909 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 158
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 30, 43

Conread position: 262-492
Cow position: chr18:858699-858931 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 161
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 30, 57

Conread position: 262-493
Cow position: chr18:3211752-3211987 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 163
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 28, 49

Conread position: 262-493
Cow position: chr18:47835707-47835934 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 162
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 30, 60

Conread position: 262-494
Cow position: chr18:35873957-35874189 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 161
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 25, 71

Conread position: 262-497
Cow position: chr18:1954710-1954475 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 160
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 9, 57

Conread position: 262-497
Cow position: chr18:2774256-2774025 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 163
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 30, 62

Conread position: 264-471
Cow position: chr18:52635197-52634983 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 149
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 28, 207

Conread position: 265-490
Cow position: chr18:12584961-12584734 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 159
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 27, 82

Conread position: 265-494
Cow position: chr18:19883412-19883644 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 155
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 27, 51

Conread position: 342-493
Cow position: chr18:52251898-52251747 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.