Cow genome map
| Conread name: | rcbe16_h13.y1 |
| Conread position: | 1-224 |
| Cow position: | chr20:35970607-35970834 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 85, 12 |
| Conread position: | 1-254 |
| Cow position: | chr20:38028331-38028073 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 75, 68 |
| Conread position: | 1-255 |
| Cow position: | chr20:17734109-17733845 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 205 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 21, 105 |
| Conread position: | 1-256 |
| Cow position: | chr20:14831959-14831680 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 75, 187 |
| Conread position: | 1-256 |
| Cow position: | chr20:35145669-35145945 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 83, 177 |
| Conread position: | 1-262 |
| Cow position: | chr20:14756405-14756130 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 151 |
| Conread position: | 1-263 |
| Cow position: | chr20:4893251-4892963 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 76, 195 |
| Conread position: | 1-263 |
| Cow position: | chr20:18100081-18100356 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 211 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 76, 174 |
| Conread position: | 1-265 |
| Cow position: | chr20:12839720-12839998 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 76, 144 |
| Conread position: | 1-270 |
| Cow position: | chr20:13789972-13790255 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 81, 22 |
| Conread position: | 1-271 |
| Cow position: | chr20:3659032-3658753 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 177 |
| Conread position: | 1-301 |
| Cow position: | chr20:41977085-41977391 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 76, 44 |
| Conread position: | 1-306 |
| Cow position: | chr20:35922208-35921886 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 79, 28 |
| Conread position: | 1-423 |
| Cow position: | chr20:12442028-12441581 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 55 |
| Conread position: | 1-436 |
| Cow position: | chr20:26076750-26077211 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 148 |
| Conread position: | 1-465 |
| Cow position: | chr20:18321132-18320635 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 177 |
| Conread position: | 1-481 |
| Cow position: | chr20:2819229-2819719 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 330 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 76, 39 |
| Conread position: | 1-481 |
| Cow position: | chr20:4756160-4755659 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 176 |
| Conread position: | 1-481 |
| Cow position: | chr20:20967019-20967495 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 134 |
| Conread position: | 1-493 |
| Cow position: | chr20:3599728-3599216 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 354 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 76, 12 |
| Conread position: | 1-493 |
| Cow position: | chr20:4945583-4945067 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 39 |
| Conread position: | 1-493 |
| Cow position: | chr20:10818562-10818055 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 326 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 73, 39 |
| Conread position: | 1-493 |
| Cow position: | chr20:24069477-24069988 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 136 |
| Conread position: | 1-497 |
| Cow position: | chr20:32847015-32847529 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 28 |
| Conread position: | 2-253 |
| Cow position: | chr20:38817679-38817935 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 75, 115 |
| Conread position: | 2-491 |
| Cow position: | chr20:8429414-8429924 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 38 |
| Conread position: | 2-493 |
| Cow position: | chr20:5702411-5702904 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 174 |
| Conread position: | 3-237 |
| Cow position: | chr20:11614379-11614138 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 178 |
| Conread position: | 3-262 |
| Cow position: | chr20:5104770-5104503 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 172 |
| Conread position: | 3-268 |
| Cow position: | chr20:41119587-41119855 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 75, 137 |
| Conread position: | 3-489 |
| Cow position: | chr20:746624-747118 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 340 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 74, 111 |
| Conread position: | 3-491 |
| Cow position: | chr20:7806898-7806385 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 178 |
| Conread position: | 3-491 |
| Cow position: | chr20:9014684-9014163 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 176 |
| Conread position: | 3-496 |
| Cow position: | chr20:6501464-6501986 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 20 |
| Conread position: | 7-356 |
| Cow position: | chr20:15068816-15069189 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 56, 48 |
| Conread position: | 7-484 |
| Cow position: | chr20:9412164-9412664 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 157 |
| Conread position: | 8-217 |
| Cow position: | chr20:31845912-31845696 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 8-263 |
| Cow position: | chr20:14719071-14718802 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 170 |
| Conread position: | 8-268 |
| Cow position: | chr20:12048077-12048341 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 69, 163 |
| Conread position: | 8-268 |
| Cow position: | chr20:21019235-21019507 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 69, 7 |
| Conread position: | 8-273 |
| Cow position: | chr20:35113200-35113484 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 214 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 72, 171 |
| Conread position: | 9-255 |
| Cow position: | chr20:18185249-18185500 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 75, 170 |
| Conread position: | 9-489 |
| Cow position: | chr20:9433275-9433769 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 36 |
| Conread position: | 12-491 |
| Cow position: | chr20:24398958-24398462 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 29 |
| Conread position: | 12-493 |
| Cow position: | chr20:18392566-18392087 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 333 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 68, 92 |
| Conread position: | 17-256 |
| Cow position: | chr20:17251389-17251641 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 195 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 60, 159 |
| Conread position: | 20-255 |
| Cow position: | chr20:6054822-6054587 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 57, 18 |
| Conread position: | 30-493 |
| Cow position: | chr20:5998984-5998474 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 350 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 7, 160 |
| Conread position: | 38-461 |
| Cow position: | chr20:13751945-13752379 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 82 |
| Conread position: | 48-493 |
| Cow position: | chr20:12582238-12581773 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 8 |
| Conread position: | 49-486 |
| Cow position: | chr20:39728161-39728630 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 28, 67 |
| Conread position: | 49-493 |
| Cow position: | chr20:7426479-7426015 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 319 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 28, 22 |
| Conread position: | 55-493 |
| Cow position: | chr20:25009924-25009450 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 329 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 29, 121 |
| Conread position: | 60-255 |
| Cow position: | chr20:31147817-31148018 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 22, 78 |
| Conread position: | 64-256 |
| Cow position: | chr20:21714477-21714684 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 13, 116 |
| Conread position: | 86-279 |
| Cow position: | chr20:35958398-35958599 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 16, 56 |
| Conread position: | 96-485 |
| Cow position: | chr20:31799432-31799025 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 117, 51 |
| Conread position: | 99-268 |
| Cow position: | chr20:13967493-13967316 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 58, 75 |
| Conread position: | 100-263 |
| Cow position: | chr20:20312971-20312808 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 57, 74 |
| Conread position: | 100-493 |
| Cow position: | chr20:10200107-10200532 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 272 |
| Conread position: | 102-491 |
| Cow position: | chr20:11341037-11340622 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 55, 72 |
| Conread position: | 111-268 |
| Cow position: | chr20:11923464-11923299 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 11, 66 |
| Conread position: | 112-268 |
| Cow position: | chr20:1139995-1139832 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 45, 62 |
| Conread position: | 116-471 |
| Cow position: | chr20:12205930-12205570 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 41, 23 |
| Conread position: | 116-491 |
| Cow position: | chr20:13023696-13023321 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 278 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 41, 58 |
| Conread position: | 118-256 |
| Cow position: | chr20:26679908-26680056 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 39, 29 |
| Conread position: | 118-493 |
| Cow position: | chr20:7442340-7441956 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 38, 58 |
| Conread position: | 121-263 |
| Cow position: | chr20:22850949-22851092 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 35, 53 |
| Conread position: | 124-492 |
| Cow position: | chr20:11007990-11008355 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 34, 43 |
| Conread position: | 127-277 |
| Cow position: | chr20:3426950-3427108 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 22, 48 |
| Conread position: | 138-497 |
| Cow position: | chr20:34098154-34097761 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 141-377 |
| Cow position: | chr20:18423528-18423771 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 16, 35 |
| Conread position: | 188-471 |
| Cow position: | chr20:14917156-14917449 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 131 |
| Conread position: | 258-493 |
| Cow position: | chr20:17251667-17251902 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 34, 84 |
| Conread position: | 262-486 |
| Cow position: | chr20:9537092-9537311 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 30, 59 |
| Conread position: | 262-493 |
| Cow position: | chr20:354941-354715 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 30, 58 |
| Conread position: | 262-493 |
| Cow position: | chr20:6054560-6054323 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 262-493 |
| Cow position: | chr20:22959386-22959162 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 28, 17 |
| Conread position: | 262-493 |
| Cow position: | chr20:24711791-24712027 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 262-494 |
| Cow position: | chr20:39962531-39962762 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 27, 49 |
| Conread position: | 262-497 |
| Cow position: | chr20:39016921-39016682 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 29, 85 |
| Conread position: | 267-493 |
| Cow position: | chr20:5814529-5814752 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 22, 49 |
Show alignments to all cow chromosomes.