Cow genome map

Conread name: rcbe16_h13.y1

Conread position: 1-201
Cow position: chr23:39761988-39762194 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 161
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 29, 119

Conread position: 1-205
Cow position: chr23:1640432-1640643 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 159
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 75, 178

Conread position: 1-249
Cow position: chr23:26824613-26824862 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 190
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 50, 150

Conread position: 1-255
Cow position: chr23:16246365-16246624 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 185
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 79, 175

Conread position: 1-256
Cow position: chr23:21336868-21336600 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 178

Conread position: 1-264
Cow position: chr23:23470571-23470840 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 195
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 23, 159

Conread position: 1-265
Cow position: chr23:19002447-19002166 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 206
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 83, 151

Conread position: 1-279
Cow position: chr23:22804350-22804638 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 218
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 79, 19

Conread position: 1-279
Cow position: chr23:30656536-30656262 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 208
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 83, 118

Conread position: 1-281
Cow position: chr23:1924212-1923922 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 215
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 77, 175

Conread position: 1-389
Cow position: chr23:18204106-18204499 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 171
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 76, 148

Conread position: 1-427
Cow position: chr23:27564073-27563621 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 321
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 83, 63

Conread position: 1-475
Cow position: chr23:11473884-11473376 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 349
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 78, 22

Conread position: 1-486
Cow position: chr23:22298399-22297898 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 155

Conread position: 1-487
Cow position: chr23:7596708-7596214 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 329
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 17, 175

Conread position: 1-488
Cow position: chr23:25865058-25864558 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 334
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 75, 84

Conread position: 1-493
Cow position: chr23:8911100-8911607 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 177

Conread position: 1-497
Cow position: chr23:8698067-8698572 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 115

Conread position: 2-253
Cow position: chr23:35070106-35070363 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 183
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 75, 150

Conread position: 2-279
Cow position: chr23:6593088-6592787 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 67, 167

Conread position: 2-491
Cow position: chr23:40777885-40778407 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 150

Conread position: 3-395
Cow position: chr23:8959222-8959643 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 173

Conread position: 4-220
Cow position: chr23:39813077-39813296 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 163
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 56, 23

Conread position: 5-481
Cow position: chr23:22530781-22530307 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 318
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 72, 106

Conread position: 5-489
Cow position: chr23:533857-534365 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 145

Conread position: 7-491
Cow position: chr23:40502875-40502371 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 148

Conread position: 8-491
Cow position: chr23:34416197-34416705 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 174

Conread position: 19-273
Cow position: chr23:7402345-7402608 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 70

Conread position: 25-246
Cow position: chr23:208488-208715 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 173
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 52, 129

Conread position: 25-435
Cow position: chr23:27996783-27997216 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 284
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 52, 92

Conread position: 28-281
Cow position: chr23:1760197-1760448 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 181
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 52, 72

Conread position: 28-291
Cow position: chr23:5151629-5151924 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 217
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 49, 37

Conread position: 30-219
Cow position: chr23:4529242-4529044 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 148
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 47, 150

Conread position: 36-268
Cow position: chr23:5162083-5162330 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 191
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 44, 150

Conread position: 41-478
Cow position: chr23:39778077-39778532 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 135

Conread position: 41-497
Cow position: chr23:37065502-37066003 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 339
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 36, 30

Conread position: 43-461
Cow position: chr23:39752777-39753227 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 306
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 41, 133

Conread position: 44-476
Cow position: chr23:6995302-6994854 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 109

Conread position: 56-277
Cow position: chr23:7065176-7064959 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 157
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 21, 102

Conread position: 57-263
Cow position: chr23:1905705-1905927 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 177
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 23, 122

Conread position: 75-268
Cow position: chr23:3247288-3247487 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 159
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 82, 99

Conread position: 85-437
Cow position: chr23:35369303-35368956 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 247
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 22, 65

Conread position: 85-461
Cow position: chr23:36172253-36172637 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 260
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 20, 95

Conread position: 86-483
Cow position: chr23:31601750-31601316 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 291
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 19, 91

Conread position: 88-491
Cow position: chr23:4972496-4972909 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 278
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 17, 52

Conread position: 109-237
Cow position: chr23:36199027-36199157 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 65

Conread position: 110-493
Cow position: chr23:39302448-39302837 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 276
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 6, 66

Conread position: 112-480
Cow position: chr23:26779923-26779542 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 244
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 44, 59

Conread position: 112-486
Cow position: chr23:8293238-8293640 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 266
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 45, 59

Conread position: 116-258
Cow position: chr23:1803535-1803686 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 88, 39

Conread position: 117-256
Cow position: chr23:3434206-3434068 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 40, 22

Conread position: 117-497
Cow position: chr23:1878129-1877745 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 263
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 37, 57

Conread position: 118-267
Cow position: chr23:1991684-1991529 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 39, 56

Conread position: 118-270
Cow position: chr23:20057124-20056963 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 131
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 39, 56

Conread position: 118-461
Cow position: chr23:6172919-6172564 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 232
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 40, 56

Conread position: 119-485
Cow position: chr23:6244843-6244459 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 256
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 38, 52

Conread position: 120-254
Cow position: chr23:23884395-23884259 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 51

Conread position: 120-495
Cow position: chr23:3967802-3967413 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 267
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 86, 48

Conread position: 140-435
Cow position: chr23:12050130-12050444 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 222
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 18, 34

Conread position: 154-284
Cow position: chr23:19295158-19295026 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 69, 17

Conread position: 204-493
Cow position: chr23:39083294-39083597 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 211
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 50, 17

Conread position: 221-493
Cow position: chr23:37893-38173 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 184
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 81, 43

Conread position: 262-481
Cow position: chr23:12363704-12363484 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 150
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 30, 61

Conread position: 262-486
Cow position: chr23:39780670-39780893 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 153
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 30, 76

Conread position: 262-491
Cow position: chr23:5426345-5426578 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 155
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 30, 43

Conread position: 262-491
Cow position: chr23:10852966-10853189 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 162
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 30, 107

Conread position: 262-491
Cow position: chr23:16582994-16582766 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 161
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 30, 66

Conread position: 262-492
Cow position: chr23:1701085-1701316 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 161
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 30, 78

Conread position: 262-493
Cow position: chr23:187092-187322 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 161
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 27, 44

Conread position: 262-493
Cow position: chr23:5437083-5436858 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 165
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 30, 49

Conread position: 262-493
Cow position: chr23:11081169-11081401 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 155
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 73

Conread position: 262-493
Cow position: chr23:39813418-39813645 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 158
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 29, 77

Conread position: 262-494
Cow position: chr23:18036743-18036511 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 161
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 43

Conread position: 267-493
Cow position: chr23:306438-306668 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 152
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 267-493
Cow position: chr23:307371-307601 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 152
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 342-493
Cow position: chr23:4003639-4003792 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 370-493
Cow position: chr23:4343504-4343627 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 95
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.