Cow genome map
| Conread name: | rcbe16_h13.y1 |
| Conread position: | 1-252 |
| Cow position: | chr27:27449100-27449363 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 175 |
| Conread position: | 1-268 |
| Cow position: | chr27:17397117-17397395 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 18, 115 |
| Conread position: | 1-478 |
| Cow position: | chr27:15315827-15315347 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 140 |
| Conread position: | 1-481 |
| Cow position: | chr27:20629365-20628894 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 139 |
| Conread position: | 1-484 |
| Cow position: | chr27:11434994-11435504 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 160 |
| Conread position: | 1-486 |
| Cow position: | chr27:22440479-22439962 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 180 |
| Conread position: | 1-491 |
| Cow position: | chr27:10582700-10582186 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 175 |
| Conread position: | 1-491 |
| Cow position: | chr27:15866558-15866037 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 131 |
| Conread position: | 1-493 |
| Cow position: | chr27:1768297-1768806 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 48 |
| Conread position: | 1-497 |
| Cow position: | chr27:25809186-25809708 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 151 |
| Conread position: | 2-252 |
| Cow position: | chr27:815701-815437 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 197 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 75, 177 |
| Conread position: | 3-381 |
| Cow position: | chr27:16823143-16822761 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 274 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 97, 14 |
| Conread position: | 4-436 |
| Cow position: | chr27:26427794-26428262 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 175 |
| Conread position: | 8-256 |
| Cow position: | chr27:8291681-8291935 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 72, 24 |
| Conread position: | 8-485 |
| Cow position: | chr27:27064114-27064618 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 93 |
| Conread position: | 8-493 |
| Cow position: | chr27:27019773-27020284 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 168 |
| Conread position: | 9-417 |
| Cow position: | chr27:26856882-26857295 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 169 |
| Conread position: | 9-489 |
| Cow position: | chr27:13876056-13875553 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 345 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 67, 39 |
| Conread position: | 18-492 |
| Cow position: | chr27:8062042-8062534 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 102 |
| Conread position: | 19-259 |
| Cow position: | chr27:18544317-18544064 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 58, 160 |
| Conread position: | 20-279 |
| Cow position: | chr27:15342814-15343065 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 57, 84 |
| Conread position: | 23-262 |
| Cow position: | chr27:16099702-16099964 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 61, 155 |
| Conread position: | 24-281 |
| Cow position: | chr27:27038526-27038796 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 53, 158 |
| Conread position: | 27-255 |
| Cow position: | chr27:29831377-29831619 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 50, 150 |
| Conread position: | 31-433 |
| Cow position: | chr27:20869380-20869809 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 295 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 46, 161 |
| Conread position: | 32-468 |
| Cow position: | chr27:1636641-1637097 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 306 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 48, 37 |
| Conread position: | 56-470 |
| Cow position: | chr27:26412976-26413418 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 305 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 28, 120 |
| Conread position: | 76-220 |
| Cow position: | chr27:27455197-27455344 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 31, 99 |
| Conread position: | 76-497 |
| Cow position: | chr27:6550711-6550267 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 101 |
| Conread position: | 84-279 |
| Cow position: | chr27:31147421-31147630 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 21, 94 |
| Conread position: | 85-466 |
| Cow position: | chr27:11273818-11273416 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 277 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 64, 87 |
| Conread position: | 85-491 |
| Cow position: | chr27:28921648-28922077 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 89 |
| Conread position: | 85-497 |
| Cow position: | chr27:12516448-12516004 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 304 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 27, 90 |
| Conread position: | 91-491 |
| Cow position: | chr27:28518530-28518111 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 85 |
| Conread position: | 98-493 |
| Cow position: | chr27:7934928-7935342 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 263 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 55, 76 |
| Conread position: | 100-268 |
| Cow position: | chr27:14902416-14902596 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 57, 41 |
| Conread position: | 100-485 |
| Cow position: | chr27:26508928-26509332 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 272 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 113, 55 |
| Conread position: | 100-491 |
| Cow position: | chr27:6500298-6499876 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 287 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 57, 71 |
| Conread position: | 111-493 |
| Cow position: | chr27:27558308-27558689 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 112-476 |
| Cow position: | chr27:16478128-16478504 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 47, 13 |
| Conread position: | 112-492 |
| Cow position: | chr27:2592762-2592354 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 35 |
| Conread position: | 118-269 |
| Cow position: | chr27:6523261-6523097 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 39, 57 |
| Conread position: | 118-279 |
| Cow position: | chr27:30765247-30765082 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 39, 57 |
| Conread position: | 120-252 |
| Cow position: | chr27:16871706-16871842 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 93, 35 |
| Conread position: | 120-252 |
| Cow position: | chr27:26406830-26406973 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 93, 52 |
| Conread position: | 120-325 |
| Cow position: | chr27:17926424-17926642 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 121-490 |
| Cow position: | chr27:30605895-30605517 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 263 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 36, 53 |
| Conread position: | 135-492 |
| Cow position: | chr27:30915200-30914824 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 263 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 22, 39 |
| Conread position: | 159-461 |
| Cow position: | chr27:15408872-15409191 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 54, 12 |
| Conread position: | 260-485 |
| Cow position: | chr27:27640956-27641189 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 30, 153 |
| Conread position: | 262-478 |
| Cow position: | chr27:15865655-15865435 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 262-486 |
| Cow position: | chr27:30988840-30988618 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 30, 66 |
| Conread position: | 262-489 |
| Cow position: | chr27:8168387-8168613 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 30, 47 |
| Conread position: | 262-491 |
| Cow position: | chr27:18739428-18739192 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 27, 71 |
| Conread position: | 262-491 |
| Cow position: | chr27:28931750-28931984 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 30, 54 |
| Conread position: | 262-493 |
| Cow position: | chr27:1353631-1353396 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 27, 66 |
| Conread position: | 262-493 |
| Cow position: | chr27:5553509-5553283 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 35, 23 |
| Conread position: | 262-493 |
| Cow position: | chr27:19660979-19660744 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 30, 57 |
| Conread position: | 262-493 |
| Cow position: | chr27:20514865-20514636 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 30, 83 |
| Conread position: | 262-493 |
| Cow position: | chr27:23554286-23554513 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 68 |
| Conread position: | 262-493 |
| Cow position: | chr27:26489861-26490089 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 30, 57 |
| Conread position: | 262-497 |
| Cow position: | chr27:10979907-10979672 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 27, 44 |
| Conread position: | 264-490 |
| Cow position: | chr27:17994901-17995127 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 28, 64 |
| Conread position: | 265-497 |
| Cow position: | chr27:26111868-26112106 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 29, 125 |
Show alignments to all cow chromosomes.