Cow genome map
| Conread name: | rcbe16_h13.y1 |
| Conread position: | 1-217 |
| Cow position: | chr28:14997689-14997911 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 79, 169 |
| Conread position: | 1-246 |
| Cow position: | chr28:3750936-3751202 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 202 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 37, 185 |
| Conread position: | 1-255 |
| Cow position: | chr28:10879399-10879661 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 79, 176 |
| Conread position: | 1-255 |
| Cow position: | chr28:21104219-21103951 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 76, 174 |
| Conread position: | 1-257 |
| Cow position: | chr28:13371551-13371278 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 95 |
| Conread position: | 1-262 |
| Cow position: | chr28:28163722-28163986 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 75, 11 |
| Conread position: | 1-263 |
| Cow position: | chr28:2280043-2279763 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 47, 181 |
| Conread position: | 1-263 |
| Cow position: | chr28:5553293-5553042 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 76, 18 |
| Conread position: | 1-267 |
| Cow position: | chr28:3144262-3143986 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 174 |
| Conread position: | 1-268 |
| Cow position: | chr28:16215266-16214998 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 200 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 84, 176 |
| Conread position: | 1-268 |
| Cow position: | chr28:23616027-23616314 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 76, 175 |
| Conread position: | 1-279 |
| Cow position: | chr28:14657322-14657618 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 83, 52 |
| Conread position: | 1-363 |
| Cow position: | chr28:8716870-8716501 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 76, 164 |
| Conread position: | 1-395 |
| Cow position: | chr28:22279559-22279150 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 64, 163 |
| Conread position: | 1-435 |
| Cow position: | chr28:8911595-8911138 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 315 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 76, 176 |
| Conread position: | 1-436 |
| Cow position: | chr28:4536106-4536550 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 319 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 76, 39 |
| Conread position: | 1-436 |
| Cow position: | chr28:11787081-11786626 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 312 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 76, 150 |
| Conread position: | 1-461 |
| Cow position: | chr28:16084952-16085441 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 19 |
| Conread position: | 1-478 |
| Cow position: | chr28:25248998-25249487 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 331 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 79, 114 |
| Conread position: | 1-479 |
| Cow position: | chr28:21354849-21355365 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 178 |
| Conread position: | 1-486 |
| Cow position: | chr28:7685051-7684563 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 171 |
| Conread position: | 1-491 |
| Cow position: | chr28:14150863-14151369 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 103 |
| Conread position: | 1-493 |
| Cow position: | chr28:16211467-16210956 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 35 |
| Conread position: | 1-493 |
| Cow position: | chr28:19222520-19221998 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 177 |
| Conread position: | 1-493 |
| Cow position: | chr28:21363384-21363888 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 11 |
| Conread position: | 2-216 |
| Cow position: | chr28:8290361-8290585 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 75, 179 |
| Conread position: | 2-268 |
| Cow position: | chr28:8372097-8372380 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 176 |
| Conread position: | 2-268 |
| Cow position: | chr28:10478699-10478437 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 75, 137 |
| Conread position: | 3-495 |
| Cow position: | chr28:661741-662255 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 53 |
| Conread position: | 4-268 |
| Cow position: | chr28:18717497-18717215 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 73, 123 |
| Conread position: | 5-449 |
| Cow position: | chr28:10682193-10681722 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 5-478 |
| Cow position: | chr28:5817481-5817976 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 78 |
| Conread position: | 7-488 |
| Cow position: | chr28:22132557-22133056 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 172 |
| Conread position: | 8-206 |
| Cow position: | chr28:1316158-1315955 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 165 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 69, 112 |
| Conread position: | 8-263 |
| Cow position: | chr28:5773296-5773541 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 205, 54 |
| Conread position: | 8-263 |
| Cow position: | chr28:17316496-17316765 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 206 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 70, 96 |
| Conread position: | 11-495 |
| Cow position: | chr28:11759902-11759414 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 334 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 66, 168 |
| Conread position: | 12-477 |
| Cow position: | chr28:25701223-25700733 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 14 |
| Conread position: | 17-491 |
| Cow position: | chr28:8347363-8347877 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 174 |
| Conread position: | 23-458 |
| Cow position: | chr28:34561006-34561456 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 57, 19 |
| Conread position: | 23-489 |
| Cow position: | chr28:16919514-16919025 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 155 |
| Conread position: | 24-268 |
| Cow position: | chr28:13267429-13267692 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 56, 72 |
| Conread position: | 30-270 |
| Cow position: | chr28:16441044-16441291 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 188 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 47, 146 |
| Conread position: | 30-470 |
| Cow position: | chr28:14933616-14934083 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 122 |
| Conread position: | 35-489 |
| Cow position: | chr28:10606952-10606488 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 42, 10 |
| Conread position: | 36-497 |
| Cow position: | chr28:5203865-5204344 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 317 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 44, 138 |
| Conread position: | 42-281 |
| Cow position: | chr28:7590517-7590263 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 35, 48 |
| Conread position: | 43-252 |
| Cow position: | chr28:19564926-19564700 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 33, 137 |
| Conread position: | 57-407 |
| Cow position: | chr28:7751619-7751239 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 20, 121 |
| Conread position: | 60-279 |
| Cow position: | chr28:12758823-12758586 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 20, 117 |
| Conread position: | 63-220 |
| Cow position: | chr28:26627790-26627630 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 21, 86 |
| Conread position: | 75-270 |
| Cow position: | chr28:16879564-16879366 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 82, 99 |
| Conread position: | 75-491 |
| Cow position: | chr28:2800947-2801370 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 72 |
| Conread position: | 78-449 |
| Cow position: | chr28:8963231-8963621 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 78, 28 |
| Conread position: | 84-268 |
| Cow position: | chr28:16450981-16450797 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 73, 27 |
| Conread position: | 85-461 |
| Cow position: | chr28:23008017-23007614 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 15, 94 |
| Conread position: | 92-255 |
| Cow position: | chr28:26784750-26784573 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 15, 86 |
| Conread position: | 100-331 |
| Cow position: | chr28:29953116-29952876 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 59, 24 |
| Conread position: | 105-491 |
| Cow position: | chr28:34229963-34230374 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 283 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 52, 69 |
| Conread position: | 108-230 |
| Cow position: | chr28:3408480-3408352 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 39 |
| Conread position: | 109-268 |
| Cow position: | chr28:16244021-16243852 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 66 |
| Conread position: | 109-268 |
| Cow position: | chr28:16253117-16252954 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 104, 62 |
| Conread position: | 110-481 |
| Cow position: | chr28:29434688-29434292 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 12, 66 |
| Conread position: | 113-435 |
| Cow position: | chr28:8408477-8408824 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 9, 65 |
| Conread position: | 116-270 |
| Cow position: | chr28:2905326-2905487 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 41, 6 |
| Conread position: | 116-405 |
| Cow position: | chr28:24646285-24646599 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 41, 58 |
| Conread position: | 116-489 |
| Cow position: | chr28:24996843-24996470 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 41, 53 |
| Conread position: | 119-491 |
| Cow position: | chr28:5236852-5236452 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 274 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 81, 52 |
| Conread position: | 130-491 |
| Cow position: | chr28:11423045-11422672 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 27, 38 |
| Conread position: | 153-489 |
| Cow position: | chr28:5188617-5188281 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 69, 18 |
| Conread position: | 171-497 |
| Cow position: | chr28:10844920-10845252 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 102 |
| Conread position: | 172-436 |
| Cow position: | chr28:4809596-4809870 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 98 |
| Conread position: | 234-493 |
| Cow position: | chr28:28766016-28765755 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 88 |
| Conread position: | 262-485 |
| Cow position: | chr28:20313193-20313415 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 29, 78 |
| Conread position: | 262-489 |
| Cow position: | chr28:4881319-4881094 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 30, 54 |
| Conread position: | 262-489 |
| Cow position: | chr28:10053415-10053180 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 262-491 |
| Cow position: | chr28:19262670-19262441 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 49, 81 |
| Conread position: | 262-491 |
| Cow position: | chr28:27218242-27218468 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 30, 72 |
| Conread position: | 262-493 |
| Cow position: | chr28:3011355-3011122 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 30, 84 |
| Conread position: | 262-493 |
| Cow position: | chr28:11559716-11559486 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 30, 17 |
| Conread position: | 262-497 |
| Cow position: | chr28:26982819-26982587 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 30, 58 |
| Conread position: | 263-485 |
| Cow position: | chr28:5144599-5144381 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 69 |
| Conread position: | 267-481 |
| Cow position: | chr28:11866743-11866529 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 26, 53 |
| Conread position: | 287-491 |
| Cow position: | chr28:17601607-17601408 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 322-486 |
| Cow position: | chr28:7498172-7498006 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 10, 0 |
Show alignments to all cow chromosomes.