Cow genome map

Conread name: rcbe16_h13.y1

Conread position: 1-201
Cow position: chr6:42420925-42421127 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 156
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 60, 153

Conread position: 1-253
Cow position: chr6:642934-642647 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 213
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 55, 191

Conread position: 1-255
Cow position: chr6:55474909-55475174 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 196
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 77, 141

Conread position: 1-258
Cow position: chr6:22877495-22877230 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 206
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 76, 119

Conread position: 1-262
Cow position: chr6:18080857-18080573 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 207
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 7, 179

Conread position: 1-263
Cow position: chr6:1174842-1174563 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 207
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 76, 175

Conread position: 1-263
Cow position: chr6:2012681-2012954 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 26

Conread position: 1-263
Cow position: chr6:13741357-13741631 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 95

Conread position: 1-268
Cow position: chr6:21312096-21311813 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 175

Conread position: 1-280
Cow position: chr6:48468461-48468759 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 182

Conread position: 1-289
Cow position: chr6:5501131-5500826 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 212
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 67, 27

Conread position: 1-315
Cow position: chr6:6187924-6188242 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 219
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 76, 116

Conread position: 1-362
Cow position: chr6:606921-607313 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 276
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 76, 178

Conread position: 1-363
Cow position: chr6:17090252-17090653 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 280
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 67, 165

Conread position: 1-364
Cow position: chr6:5958356-5957974 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 281
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 76, 150

Conread position: 1-428
Cow position: chr6:456840-457293 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 320
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 75, 52

Conread position: 1-436
Cow position: chr6:4864879-4864421 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 147

Conread position: 1-436
Cow position: chr6:31535897-31535443 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 309
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 119, 21

Conread position: 1-465
Cow position: chr6:38770964-38771435 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 329
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 79, 29

Conread position: 1-478
Cow position: chr6:40031852-40032358 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 177

Conread position: 1-489
Cow position: chr6:45690950-45690431 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 353
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 75, 167

Conread position: 1-491
Cow position: chr6:61631954-61631427 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 109

Conread position: 1-493
Cow position: chr6:7801704-7801215 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 35

Conread position: 2-484
Cow position: chr6:54867179-54867691 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 350
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 53, 63

Conread position: 2-493
Cow position: chr6:15305249-15305751 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 88

Conread position: 3-268
Cow position: chr6:53178300-53178579 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 52

Conread position: 3-281
Cow position: chr6:10605345-10605645 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 222
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 79, 177

Conread position: 6-491
Cow position: chr6:2607278-2607786 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 174

Conread position: 7-424
Cow position: chr6:54140484-54140911 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 16

Conread position: 8-269
Cow position: chr6:47540191-47540473 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 215
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 37, 172

Conread position: 8-284
Cow position: chr6:31688714-31688428 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 194
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 92, 73

Conread position: 8-491
Cow position: chr6:55688714-55689207 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 329
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 47, 57

Conread position: 9-268
Cow position: chr6:36470898-36470626 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 59

Conread position: 10-252
Cow position: chr6:38988005-38987750 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 184
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 70, 167

Conread position: 10-268
Cow position: chr6:16410864-16411131 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 202
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 68, 142

Conread position: 10-492
Cow position: chr6:10176630-10176120 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 164

Conread position: 20-255
Cow position: chr6:6642910-6642673 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 180
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 57, 153

Conread position: 35-493
Cow position: chr6:15938171-15937672 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 338
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 42, 155

Conread position: 41-436
Cow position: chr6:31525751-31526172 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 293
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 45, 102

Conread position: 50-460
Cow position: chr6:34196440-34195999 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 298
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 27, 129

Conread position: 51-493
Cow position: chr6:21534768-21535220 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 128

Conread position: 56-268
Cow position: chr6:54369182-54368958 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 172
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 21, 93

Conread position: 56-478
Cow position: chr6:6201162-6201592 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 296
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 13, 101

Conread position: 61-262
Cow position: chr6:32024618-32024401 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 165
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 22, 117

Conread position: 75-490
Cow position: chr6:60473869-60474310 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 103

Conread position: 85-272
Cow position: chr6:47150524-47150721 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 154
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 22, 92

Conread position: 85-275
Cow position: chr6:64449137-64449334 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 155
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 16, 92

Conread position: 85-471
Cow position: chr6:16352574-16352193 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 266
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 22, 69

Conread position: 87-256
Cow position: chr6:42961620-42961434 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 149
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 16, 90

Conread position: 100-493
Cow position: chr6:56849781-56850197 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 280
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 57, 74

Conread position: 103-490
Cow position: chr6:54430584-54431007 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 284
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 15, 72

Conread position: 104-279
Cow position: chr6:54885146-54884960 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 149
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 53, 67

Conread position: 105-491
Cow position: chr6:50983976-50984403 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 295
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 51, 245

Conread position: 106-489
Cow position: chr6:29239712-29240116 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 272
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 43, 71

Conread position: 109-263
Cow position: chr6:57164202-57164362 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 93, 64

Conread position: 110-493
Cow position: chr6:37148970-37149366 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 273
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 15, 43

Conread position: 111-268
Cow position: chr6:59302052-59301880 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 134
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 14, 64

Conread position: 113-486
Cow position: chr6:38207719-38207318 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 287
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 44, 34

Conread position: 115-263
Cow position: chr6:51398579-51398737 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 127
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 42, 59

Conread position: 115-268
Cow position: chr6:45160513-45160354 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 31, 58

Conread position: 116-481
Cow position: chr6:6063500-6063122 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 255
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 41, 55

Conread position: 116-491
Cow position: chr6:7539352-7539751 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 278
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 31, 59

Conread position: 118-263
Cow position: chr6:9026298-9026452 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 123
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 39, 56

Conread position: 118-268
Cow position: chr6:40774567-40774412 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 39, 56

Conread position: 118-310
Cow position: chr6:14289553-14289355 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 39, 56

Conread position: 118-461
Cow position: chr6:28977250-28976889 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 254
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 32, 58

Conread position: 118-478
Cow position: chr6:14949700-14949311 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 267
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 32, 56

Conread position: 118-491
Cow position: chr6:36202609-36202999 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 262
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 41, 57

Conread position: 118-492
Cow position: chr6:24110085-24110463 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 255
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 35, 59

Conread position: 119-254
Cow position: chr6:242596-242735 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 115
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 38, 56

Conread position: 120-486
Cow position: chr6:5609657-5609271 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 279
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 37, 54

Conread position: 126-455
Cow position: chr6:23532452-23532799 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 237
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 33, 49

Conread position: 133-461
Cow position: chr6:51463820-51463483 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 238
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 21, 41

Conread position: 138-491
Cow position: chr6:55546359-55545994 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 249
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 18, 28

Conread position: 154-465
Cow position: chr6:37783234-37783555 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 216
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 34, 17

Conread position: 159-497
Cow position: chr6:8125157-8125513 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 250
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 64, 12

Conread position: 161-492
Cow position: chr6:12668934-12669277 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 242
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 61, 10

Conread position: 259-493
Cow position: chr6:24339232-24339468 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 170
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 29, 60

Conread position: 262-465
Cow position: chr6:42565641-42565842 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 26, 76

Conread position: 262-465
Cow position: chr6:58597552-58597350 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 80, 17

Conread position: 262-480
Cow position: chr6:65264586-65264376 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 30, 58

Conread position: 262-485
Cow position: chr6:4692027-4691805 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 155
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 30, 170

Conread position: 262-491
Cow position: chr6:19695759-19695987 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 163
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 23, 63

Conread position: 262-492
Cow position: chr6:3592353-3592579 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 163
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 30, 11

Conread position: 262-492
Cow position: chr6:14914289-14914054 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 156
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 30, 127

Conread position: 262-492
Cow position: chr6:56986694-56986469 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 165
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 8, 55

Conread position: 262-493
Cow position: chr6:5330362-5330594 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 165
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 30, 68

Conread position: 262-493
Cow position: chr6:21514661-21514425 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 160
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 24, 68

Conread position: 262-497
Cow position: chr6:5095595-5095355 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 164
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 30, 0

Conread position: 263-481
Cow position: chr6:2584894-2585113 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 150
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 29, 77

Show alignments to all cow chromosomes.