Cow genome map

Conread name: rcbe16_h13.y1

Conread position: 1-207
Cow position: chr9:44821894-44822105 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 76, 132

Conread position: 1-255
Cow position: chr9:42498238-42497970 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 178

Conread position: 1-255
Cow position: chr9:48017413-48017682 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 199
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 75, 178

Conread position: 1-256
Cow position: chr9:9491198-9490935 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 210
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 72, 65

Conread position: 1-263
Cow position: chr9:17410779-17411047 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 156

Conread position: 1-268
Cow position: chr9:3388101-3387819 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 206
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 79, 172

Conread position: 1-268
Cow position: chr9:9443183-9443469 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 210
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 75, 31

Conread position: 1-268
Cow position: chr9:35904341-35904617 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 178

Conread position: 1-268
Cow position: chr9:47385373-47385659 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 196
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 76, 0

Conread position: 1-268
Cow position: chr9:61997195-61997471 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 217
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 79, 17

Conread position: 1-275
Cow position: chr9:26099751-26099460 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 211
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 76, 21

Conread position: 1-364
Cow position: chr9:23028210-23027819 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 184

Conread position: 1-430
Cow position: chr9:5510134-5509673 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 178

Conread position: 1-435
Cow position: chr9:8534276-8534746 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 328
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 79, 132

Conread position: 1-435
Cow position: chr9:62400365-62399906 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 315
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 76, 89

Conread position: 1-436
Cow position: chr9:7634673-7634214 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 11

Conread position: 1-465
Cow position: chr9:6952490-6952015 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 69

Conread position: 1-478
Cow position: chr9:8998764-8998250 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 22

Conread position: 1-492
Cow position: chr9:35101283-35100777 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 340
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 76, 184

Conread position: 1-493
Cow position: chr9:9552495-9551979 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 176

Conread position: 1-493
Cow position: chr9:16300158-16300688 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 180

Conread position: 1-493
Cow position: chr9:37017294-37016788 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 178

Conread position: 2-263
Cow position: chr9:53109930-53109665 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 203
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 78, 69

Conread position: 2-491
Cow position: chr9:9723475-9723988 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 355
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 74, 5

Conread position: 2-493
Cow position: chr9:33823500-33823005 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 150

Conread position: 3-256
Cow position: chr9:8868728-8869001 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 176

Conread position: 3-263
Cow position: chr9:214055-214334 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 200
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 58, 49

Conread position: 4-463
Cow position: chr9:45756759-45756278 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 328
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 76, 95

Conread position: 4-486
Cow position: chr9:21888576-21888063 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 176

Conread position: 4-493
Cow position: chr9:15805518-15806037 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 66

Conread position: 4-493
Cow position: chr9:26057045-26057541 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 332
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 73, 156

Conread position: 5-237
Cow position: chr9:18252524-18252756 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 182
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 72, 132

Conread position: 5-486
Cow position: chr9:36446030-36445509 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 150

Conread position: 7-262
Cow position: chr9:54666306-54666037 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 70, 10

Conread position: 8-256
Cow position: chr9:34696893-34697157 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 170

Conread position: 8-263
Cow position: chr9:9461256-9461522 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 201
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 74, 79

Conread position: 8-263
Cow position: chr9:31662869-31662597 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 204
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 69, 142

Conread position: 8-491
Cow position: chr9:1846611-1847093 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 70

Conread position: 8-491
Cow position: chr9:31077275-31077782 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 171

Conread position: 9-263
Cow position: chr9:54610830-54611102 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 199
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 68, 121

Conread position: 13-268
Cow position: chr9:32812743-32812473 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 210
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 64, 37

Conread position: 13-281
Cow position: chr9:13994586-13994300 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 167

Conread position: 14-485
Cow position: chr9:20318191-20318677 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 319
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 64, 78

Conread position: 24-465
Cow position: chr9:19903439-19902996 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 156

Conread position: 30-256
Cow position: chr9:17785078-17785320 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 189
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 47, 148

Conread position: 40-471
Cow position: chr9:26404160-26403694 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 139

Conread position: 42-237
Cow position: chr9:45484530-45484331 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 149
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 38, 134

Conread position: 52-268
Cow position: chr9:38344254-38344019 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 183
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 25, 128

Conread position: 55-465
Cow position: chr9:43871328-43870889 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 300
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 25, 124

Conread position: 55-482
Cow position: chr9:19714426-19713977 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 303
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 22, 126

Conread position: 60-211
Cow position: chr9:58439435-58439588 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 135
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 16, 28

Conread position: 75-268
Cow position: chr9:33093278-33093081 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 30, 115

Conread position: 80-471
Cow position: chr9:7866393-7865982 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 273
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 25, 5

Conread position: 85-196
Cow position: chr9:26438243-26438359 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 101
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 17, 92

Conread position: 85-207
Cow position: chr9:37528780-37528653 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 107
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 22, 92

Conread position: 87-253
Cow position: chr9:21840396-21840219 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 142
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 15, 89

Conread position: 87-489
Cow position: chr9:29841211-29840796 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 285
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 15, 92

Conread position: 97-256
Cow position: chr9:48118396-48118557 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 22, 41

Conread position: 99-300
Cow position: chr9:25933190-25933415 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 170
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 58, 75

Conread position: 109-256
Cow position: chr9:35533655-35533811 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 127
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 50, 38

Conread position: 109-268
Cow position: chr9:20900834-20900996 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 46, 64

Conread position: 110-256
Cow position: chr9:25958709-25958557 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 125
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 47, 37

Conread position: 115-249
Cow position: chr9:36844122-36843982 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 116
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 42, 32

Conread position: 117-377
Cow position: chr9:5400004-5399738 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 198
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 87, 38

Conread position: 118-256
Cow position: chr9:3070135-3070278 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 121
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 40, 56

Conread position: 118-407
Cow position: chr9:9416119-9416423 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 214
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 39, 56

Conread position: 127-256
Cow position: chr9:30749306-30749445 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 115
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 30, 47

Conread position: 128-497
Cow position: chr9:34374652-34375042 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 257
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 13, 45

Conread position: 138-465
Cow position: chr9:33598249-33597900 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 231
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 19, 36

Conread position: 139-348
Cow position: chr9:8546585-8546373 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 160
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 19, 35

Conread position: 159-493
Cow position: chr9:1729432-1729788 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 233
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 54, 12

Conread position: 169-497
Cow position: chr9:35027938-35028282 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 234
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 53, 37

Conread position: 221-491
Cow position: chr9:20755600-20755868 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 185
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 71, 46

Conread position: 221-497
Cow position: chr9:25583995-25583713 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 186
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 34, 131

Conread position: 262-480
Cow position: chr9:22443511-22443727 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 30, 66

Conread position: 262-481
Cow position: chr9:35105673-35105894 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 156
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 30, 54

Conread position: 262-483
Cow position: chr9:17411075-17411297 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 156
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 30, 49

Conread position: 262-486
Cow position: chr9:9753277-9753501 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 160
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 30, 49

Conread position: 262-490
Cow position: chr9:9815531-9815302 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 160
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 30, 106

Conread position: 262-491
Cow position: chr9:32669831-32670059 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 157
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 30, 67

Conread position: 262-493
Cow position: chr9:8901107-8901340 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 158
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 30, 66

Conread position: 262-493
Cow position: chr9:15215569-15215801 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 161
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 30, 78

Conread position: 262-493
Cow position: chr9:26477332-26477101 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 30, 13

Conread position: 262-493
Cow position: chr9:33119769-33120002 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 161
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 27, 43

Conread position: 262-493
Cow position: chr9:48628145-48627917 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 159
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 30, 41

Conread position: 262-497
Cow position: chr9:27279425-27279191 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 30, 49

Conread position: 262-497
Cow position: chr9:30402304-30402544 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 166
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 30, 0

Conread position: 262-497
Cow position: chr9:44396775-44396544 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 164
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 25, 49

Conread position: 263-493
Cow position: chr9:51566379-51566609 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 153
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 29, 80

Conread position: 266-493
Cow position: chr9:52407279-52407057 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 158
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 26, 79

Conread position: 267-491
Cow position: chr9:41394537-41394759 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 153
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 25, 44

Conread position: 267-493
Cow position: chr9:38624513-38624738 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 153
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 24, 60

Conread position: 268-471
Cow position: chr9:28379080-28378876 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 144
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 19, 42

Conread position: 337-491
Cow position: chr9:16811612-16811766 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 42, 50

Show alignments to all cow chromosomes.