Non-Coding RNA Search

Cow genome map


           Conread name:
           rcbl0_005862.y1
        

               Conread position:
               20-237
               

               Cow position:
               chrX:5487677-5487897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               169
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               30, 13
               

               Conread position:
               34-276
               

               Cow position:
               chrX:15006904-15007152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               34, 231
               

               Conread position:
               35-278
               

               Cow position:
               chrX:38587595-38587849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               193
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               107, 13
               

               Conread position:
               42-260
               

               Cow position:
               chrX:22392742-22392972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               174
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               43-253
               

               Cow position:
               chrX:7646481-7646269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               43, 83
               

               Conread position:
               43-253
               

               Cow position:
               chrX:38964342-38964127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               43, 121
               

               Conread position:
               45-219
               

               Cow position:
               chrX:25232225-25232048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               130
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               41, 100
               

               Conread position:
               47-259
               

               Cow position:
               chrX:23089076-23088869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               67, 40
               

               Conread position:
               47-260
               

               Cow position:
               chrX:34504812-34505037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               39, 123
               

               Conread position:
               47-260
               

               Cow position:
               chrX:45110892-45110667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               47-261
               

               Cow position:
               chrX:20584553-20584339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 81
               

               Conread position:
               48-213
               

               Cow position:
               chrX:14135915-14135737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               48-213
               

               Cow position:
               chrX:39642388-39642564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               38, 138
               

               Conread position:
               48-229
               

               Cow position:
               chrX:46068524-46068716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               142
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               36, 123
               

               Conread position:
               48-241
               

               Cow position:
               chrX:41858644-41858850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               154
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               45, 200
               

               Conread position:
               48-250
               

               Cow position:
               chrX:20340417-20340621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               17, 98
               

               Conread position:
               48-253
               

               Cow position:
               chrX:6544485-6544276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               38, 165
               

               Conread position:
               48-258
               

               Cow position:
               chrX:6599536-6599768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               38, 17
               

               Conread position:
               48-261
               

               Cow position:
               chrX:42480068-42479844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               48-276
               

               Cow position:
               chrX:19469280-19469510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               177
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               89, 32
               

               Conread position:
               48-276
               

               Cow position:
               chrX:33854986-33855226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               180
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               95, 41
               

               Conread position:
               48-278
               

               Cow position:
               chrX:39353015-39352779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               11, 159
               

               Conread position:
               49-261
               

               Cow position:
               chrX:32910337-32910115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               49-261
               

               Cow position:
               chrX:35390524-35390728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               37, 58
               

               Conread position:
               50-258
               

               Cow position:
               chrX:33001136-33000919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               52-221
               

               Cow position:
               chrX:11529574-11529397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               34, 165
               

               Conread position:
               52-229
               

               Cow position:
               chrX:8759859-8759668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               52-229
               

               Cow position:
               chrX:33539387-33539213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               34, 46
               

               Conread position:
               52-236
               

               Cow position:
               chrX:17525641-17525830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               86, 37
               

               Conread position:
               52-237
               

               Cow position:
               chrX:42331509-42331319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               142
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               86, 37
               

               Conread position:
               52-240
               

               Cow position:
               chrX:2551313-2551123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               139
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               34, 79
               

               Conread position:
               52-243
               

               Cow position:
               chrX:46910044-46909844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               52-249
               

               Cow position:
               chrX:37072622-37072412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               52-250
               

               Cow position:
               chrX:21986065-21986268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               30, 185
               

               Conread position:
               52-251
               

               Cow position:
               chrX:34836836-34837044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               52-252
               

               Cow position:
               chrX:20339659-20339872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               52-253
               

               Cow position:
               chrX:19717747-19717540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               87, 37
               

               Conread position:
               52-253
               

               Cow position:
               chrX:34314257-34314042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               52-256
               

               Cow position:
               chrX:1466399-1466178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               52-257
               

               Cow position:
               chrX:16984871-16984656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               168
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               52-260
               

               Cow position:
               chrX:4467187-4466979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               171
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 86
               

               Conread position:
               52-260
               

               Cow position:
               chrX:27145835-27145616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               172
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               52-260
               

               Cow position:
               chrX:27431688-27431906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               171
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               92, 33
               

               Conread position:
               52-260
               

               Cow position:
               chrX:29467546-29467766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               37, 84
               

               Conread position:
               52-260
               

               Cow position:
               chrX:34792087-34792299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               170
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               87, 37
               

               Conread position:
               52-260
               

               Cow position:
               chrX:43115385-43115163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               41, 180
               

               Conread position:
               52-261
               

               Cow position:
               chrX:11656314-11656092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               52-261
               

               Cow position:
               chrX:12979599-12979823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               52-261
               

               Cow position:
               chrX:29050478-29050261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               34, 49
               

               Conread position:
               52-261
               

               Cow position:
               chrX:41871293-41871078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               166
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               34, 63
               

               Conread position:
               52-261
               

               Cow position:
               chrX:45649106-45648885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               37, 76
               

               Conread position:
               52-273
               

               Cow position:
               chrX:2523464-2523683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               168
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               36, 76
               

               Conread position:
               52-273
               

               Cow position:
               chrX:10959180-10959395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               158
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               34, 86
               

               Conread position:
               52-278
               

               Cow position:
               chrX:1499890-1499660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               34, 205
               

               Conread position:
               52-283
               

               Cow position:
               chrX:24054897-24054667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               34, 84
               

               Conread position:
               52-283
               

               Cow position:
               chrX:41123281-41123051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               34, 109
               

               Conread position:
               53-179
               

               Cow position:
               chrX:44095648-44095524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               97
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               53-209
               

               Cow position:
               chrX:40556227-40556396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               127
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               53-238
               

               Cow position:
               chrX:27207029-27206831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               81, 36
               

               Conread position:
               53-244
               

               Cow position:
               chrX:11781481-11781281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               34, 18
               

               Conread position:
               53-257
               

               Cow position:
               chrX:31442604-31442815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               53-258
               

               Cow position:
               chrX:26881327-26881551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               33, 54
               

               Conread position:
               53-258
               

               Cow position:
               chrX:34377174-34376956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               53-260
               

               Cow position:
               chrX:6414267-6414059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               90, 36
               

               Conread position:
               53-260
               

               Cow position:
               chrX:37575051-37574852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               33, 78
               

               Conread position:
               53-260
               

               Cow position:
               chrX:42927595-42927812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               33, 52
               

               Conread position:
               53-261
               

               Cow position:
               chrX:30133089-30133307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               82, 42
               

               Conread position:
               53-261
               

               Cow position:
               chrX:40035207-40035430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               169
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               24, 30
               

               Conread position:
               53-274
               

               Cow position:
               chrX:31744780-31745004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               163
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               33, 205
               

               Conread position:
               53-277
               

               Cow position:
               chrX:35885497-35885733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               33, 117
               

               Conread position:
               54-215
               

               Cow position:
               chrX:18812330-18812166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               54-215
               

               Cow position:
               chrX:23497463-23497634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               54-215
               

               Cow position:
               chrX:40567839-40567678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               119
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               32, 85
               

               Conread position:
               54-219
               

               Cow position:
               chrX:25925422-25925589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               35, 107
               

               Conread position:
               54-248
               

               Cow position:
               chrX:32867104-32866899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               32, 152
               

               Conread position:
               54-253
               

               Cow position:
               chrX:28940478-28940261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               54-257
               

               Cow position:
               chrX:8925914-8925714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               160
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               32, 92
               

               Conread position:
               54-260
               

               Cow position:
               chrX:2936187-2935969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               54-260
               

               Cow position:
               chrX:5118264-5118490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               54-260
               

               Cow position:
               chrX:11938719-11938923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               34, 86
               

               Conread position:
               54-260
               

               Cow position:
               chrX:13177250-13177466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               171
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               93, 35
               

               Conread position:
               54-260
               

               Cow position:
               chrX:37780877-37781097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               14, 40
               

               Conread position:
               54-261
               

               Cow position:
               chrX:9650794-9651013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               161
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               35, 16
               

               Conread position:
               54-261
               

               Cow position:
               chrX:28098542-28098336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               42, 50
               

               Conread position:
               54-261
               

               Cow position:
               chrX:35224510-35224307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               163
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               32, 72
               

               Conread position:
               55-224
               

               Cow position:
               chrX:41166596-41166777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               135
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               31, 116
               

               Conread position:
               55-234
               

               Cow position:
               chrX:16555990-16556179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               31, 128
               

               Conread position:
               55-258
               

               Cow position:
               chrX:38094293-38094502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               88, 167
               

               Conread position:
               55-259
               

               Cow position:
               chrX:47248564-47248771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               31, 84
               

               Conread position:
               55-260
               

               Cow position:
               chrX:12437050-12437258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               31, 130
               

               Conread position:
               55-260
               

               Cow position:
               chrX:32208594-32208810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               31, 55
               

               Conread position:
               55-260
               

               Cow position:
               chrX:40685096-40685316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               55-261
               

               Cow position:
               chrX:1087915-1088129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               158
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               31, 162
               

               Conread position:
               55-261
               

               Cow position:
               chrX:45429798-45430011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               31, 17
               

               Conread position:
               55-276
               

               Cow position:
               chrX:3806912-3806678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               14, 216
               

               Conread position:
               56-197
               

               Cow position:
               chrX:35029704-35029851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               116
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               30, 18
               

               Conread position:
               56-228
               

               Cow position:
               chrX:20666670-20666857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               56-246
               

               Cow position:
               chrX:23358885-23359085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               30, 163
               

               Conread position:
               56-251
               

               Cow position:
               chrX:39488979-39489169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               35, 104
               

               Conread position:
               56-253
               

               Cow position:
               chrX:908173-907965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               30, 154
               

               Conread position:
               56-253
               

               Cow position:
               chrX:29541996-29542198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               150
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               30, 90
               

               Conread position:
               56-257
               

               Cow position:
               chrX:5637947-5638154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               30, 81
               

               Conread position:
               56-259
               

               Cow position:
               chrX:20957469-20957251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               30, 15
               

               Conread position:
               56-260
               

               Cow position:
               chrX:34412080-34411858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               56-260
               

               Cow position:
               chrX:35986047-35985832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               77, 33
               

               Conread position:
               56-260
               

               Cow position:
               chrX:46291368-46291149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               83, 24
               

               Conread position:
               56-261
               

               Cow position:
               chrX:4152812-4153020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               161
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               56-261
               

               Cow position:
               chrX:5919719-5919503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               91, 29
               

               Conread position:
               57-189
               

               Cow position:
               chrX:31279696-31279841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               117
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               57-211
               

               Cow position:
               chrX:29681887-29682050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               29, 59
               

               Conread position:
               57-255
               

               Cow position:
               chrX:47650003-47650190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               194, 24
               

               Conread position:
               57-260
               

               Cow position:
               chrX:39290586-39290371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               167
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               57-261
               

               Cow position:
               chrX:6559225-6559437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               153
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               57-278
               

               Cow position:
               chrX:42432283-42432518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               29, 150
               

               Conread position:
               57-283
               

               Cow position:
               chrX:11325877-11326108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 118
               

               Conread position:
               58-237
               

               Cow position:
               chrX:34991591-34991399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               58-247
               

               Cow position:
               chrX:38560780-38560584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               58-250
               

               Cow position:
               chrX:46072600-46072795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               141
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               58-253
               

               Cow position:
               chrX:20583890-20583684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               167
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               81, 27
               

               Conread position:
               58-257
               

               Cow position:
               chrX:4289664-4289457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               58-260
               

               Cow position:
               chrX:27306669-27306466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               153
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               28, 87
               

               Conread position:
               58-261
               

               Cow position:
               chrX:27668732-27668947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 49
               

               Conread position:
               58-278
               

               Cow position:
               chrX:9251933-9252168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               179
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               28, 216
               

               Conread position:
               58-278
               

               Cow position:
               chrX:16762998-16762764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               28, 213
               

               Conread position:
               59-229
               

               Cow position:
               chrX:16763701-16763882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               59-258
               

               Cow position:
               chrX:45502364-45502158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               79, 26
               

               Conread position:
               59-261
               

               Cow position:
               chrX:17966553-17966352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               62, 26
               

               Conread position:
               59-261
               

               Cow position:
               chrX:25207632-25207844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               27, 129
               

               Conread position:
               59-277
               

               Cow position:
               chrX:4399347-4399122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               27, 136
               

               Conread position:
               59-278
               

               Cow position:
               chrX:7722203-7721987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               82, 30
               

               Conread position:
               59-278
               

               Cow position:
               chrX:26205229-26205453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               77, 15
               

               Conread position:
               60-219
               

               Cow position:
               chrX:31827627-31827791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               124
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               85, 25
               

               Conread position:
               60-245
               

               Cow position:
               chrX:918501-918688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               74, 25
               

               Conread position:
               60-249
               

               Cow position:
               chrX:5026479-5026279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               60-258
               

               Cow position:
               chrX:9201771-9201562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               60-258
               

               Cow position:
               chrX:22115086-22115303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               60-260
               

               Cow position:
               chrX:34532739-34532532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               69, 21
               

               Conread position:
               60-261
               

               Cow position:
               chrX:16836066-16836275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               26, 157
               

               Conread position:
               60-261
               

               Cow position:
               chrX:42380884-42381101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               29, 33
               

               Conread position:
               60-267
               

               Cow position:
               chrX:161628-161418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               69, 25
               

               Conread position:
               60-280
               

               Cow position:
               chrX:11762783-11763009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               27, 204
               

               Conread position:
               61-242
               

               Cow position:
               chrX:4942053-4942228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               25, 76
               

               Conread position:
               61-277
               

               Cow position:
               chrX:20887422-20887645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               75, 28
               

               Conread position:
               64-260
               

               Cow position:
               chrX:19286677-19286879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               22, 91
               

               Conread position:
               64-261
               

               Cow position:
               chrX:1615834-1616030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               22, 56
               

               Conread position:
               65-202
               

               Cow position:
               chrX:25420547-25420401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               113
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               66-207
               

               Cow position:
               chrX:40263890-40263746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               117
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               20, 68
               

               Conread position:
               66-248
               

               Cow position:
               chrX:35382820-35383012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               20, 136
               

               Conread position:
               66-272
               

               Cow position:
               chrX:17795201-17794981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               158
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               66-274
               

               Cow position:
               chrX:8869182-8869405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               66-276
               

               Cow position:
               chrX:35278532-35278326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               20, 9
               

               Conread position:
               66-277
               

               Cow position:
               chrX:29601607-29601832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               164
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               20, 205
               

               Conread position:
               67-258
               

               Cow position:
               chrX:41526313-41526508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               27, 35
               

               Conread position:
               67-260
               

               Cow position:
               chrX:31436690-31436486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               162
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               68-254
               

               Cow position:
               chrX:31480186-31479989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               18, 145
               

               Conread position:
               68-254
               

               Cow position:
               chrX:38642462-38642267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               18, 33
               

               Conread position:
               68-278
               

               Cow position:
               chrX:20881741-20881944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               18, 74
               

               Conread position:
               69-249
               

               Cow position:
               chrX:20152067-20151883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               141
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               17, 156
               

               Conread position:
               71-258
               

               Cow position:
               chrX:47061603-47061410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               72-253
               

               Cow position:
               chrX:45382845-45383026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               14, 71
               

               Conread position:
               72-258
               

               Cow position:
               chrX:41192905-41192717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               14, 43
               

               Conread position:
               73-259
               

               Cow position:
               chrX:30824200-30824000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               73-279
               

               Cow position:
               chrX:46069970-46070179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               13, 69
               

               Conread position:
               74-276
               

               Cow position:
               chrX:37119789-37119592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               15, 57
               

               Conread position:
               82-261
               

               Cow position:
               chrX:14275543-14275732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               142
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               85-261
               

               Cow position:
               chrX:35543085-35542906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               57, 147
               

               Conread position:
               90-259
               

               Cow position:
               chrX:41862556-41862377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               133
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               49, 152
               

               Conread position:
               95-275
               

               Cow position:
               chrX:4515879-4515682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               41, 97
               

               Conread position:
               117-260
               

               Cow position:
               chrX:24424245-24424389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               108
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               117-278
               

               Cow position:
               chrX:23092025-23091864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               119
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               80, 26
               

               Conread position:
               124-241
               

               Cow position:
               chrX:29688027-29688144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               96
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               18, 35
               

               Conread position:
               124-257
               

               Cow position:
               chrX:42160772-42160641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               102
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               18, 83
               

               Conread position:
               124-258
               

               Cow position:
               chrX:616109-616245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               106
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               124-260
               

               Cow position:
               chrX:618859-618990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               16, 61
               

               Conread position:
               124-260
               

               Cow position:
               chrX:23266563-23266427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               100
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               124-260
               

               Cow position:
               chrX:36848428-36848566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               112
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               11, 32
               

               Conread position:
               124-261
               

               Cow position:
               chrX:5135371-5135512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               112
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               124-283
               

               Cow position:
               chrX:42469793-42469953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               120
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               125-258
               

               Cow position:
               chrX:42171149-42171280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               100
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               127-261
               

               Cow position:
               chrX:32942932-32943065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               103
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               132-246
               

               Cow position:
               chrX:21573711-21573599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               94
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               132-258
               

               Cow position:
               chrX:37232546-37232421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               99
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               134-283
               

               Cow position:
               chrX:19273570-19273719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               143, 10
               

               Conread position:
               137-260
               

               Cow position:
               chrX:17726110-17725987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               99
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               137-261
               

               Cow position:
               chrX:38006637-38006755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               99
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               140-251
               

               Cow position:
               chrX:4617266-4617377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               112
               

               Alignm identity:
               90
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               141-255
               

               Cow position:
               chrX:34508675-34508561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               91
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               141-258
               

               Cow position:
               chrX:46429688-46429805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               97
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               141-260
               

               Cow position:
               chrX:4615880-4615999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               99
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               109, 17
               

               Conread position:
               141-260
               

               Cow position:
               chrX:31312160-31312041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               100
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               141-260
               

               Cow position:
               chrX:38853328-38853210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               95
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               141-261
               

               Cow position:
               chrX:12082193-12082312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               100
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               141-261
               

               Cow position:
               chrX:29501753-29501870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               95
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               141-274
               

               Cow position:
               chrX:40531912-40532045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               107
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               141-278
               

               Cow position:
               chrX:878249-878385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               115
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               126, 0
               

               Conread position:
               141-282
               

               Cow position:
               chrX:29230130-29229987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               106
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               143-260
               

               Cow position:
               chrX:25328487-25328603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               95
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               143-260
               

               Cow position:
               chrX:29585248-29585131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               93
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               144-262
               

               Cow position:
               chrX:42481603-42481721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               92
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               145-250
               

               Cow position:
               chrX:7695876-7695773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               106
               

               Alignm identity:
               88
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               64, 0
               
Show alignments to all cow chromosomes.
Conread position:	20-237
Cow position:	chrX:5487677-5487897 (view UCSC Genome Browser custom track)
Alignm length:	229
Alignm identity:	169
Alignm E-value:	9e-30
Alignm gaps (pig, cow):	30, 13
Conread position:	34-276
Cow position:	chrX:15006904-15007152 (view UCSC Genome Browser custom track)
Alignm length:	250
Alignm identity:	169
Alignm E-value:	7e-27
Alignm gaps (pig, cow):	34, 231
Conread position:	35-278
Cow position:	chrX:38587595-38587849 (view UCSC Genome Browser custom track)
Alignm length:	260
Alignm identity:	193
Alignm E-value:	6e-36
Alignm gaps (pig, cow):	107, 13
Conread position:	42-260
Cow position:	chrX:22392742-22392972 (view UCSC Genome Browser custom track)
Alignm length:	231
Alignm identity:	174
Alignm E-value:	8.99999e-40
Alignm gaps (pig, cow):	44, 0
Conread position:	43-253
Cow position:	chrX:7646481-7646269 (view UCSC Genome Browser custom track)
Alignm length:	216
Alignm identity:	147
Alignm E-value:	1e-21
Alignm gaps (pig, cow):	43, 83
Conread position:	45-219
Cow position:	chrX:25232225-25232048 (view UCSC Genome Browser custom track)
Alignm length:	179
Alignm identity:	130
Alignm E-value:	6e-26
Alignm gaps (pig, cow):	41, 100
Conread position:	47-259
Cow position:	chrX:23089076-23088869 (view UCSC Genome Browser custom track)
Alignm length:	215
Alignm identity:	157
Alignm E-value:	1e-30
Alignm gaps (pig, cow):	67, 40
Conread position:	47-260
Cow position:	chrX:34504812-34505037 (view UCSC Genome Browser custom track)
Alignm length:	227
Alignm identity:	168
Alignm E-value:	1e-33
Alignm gaps (pig, cow):	39, 123
Conread position:	47-261
Cow position:	chrX:20584553-20584339 (view UCSC Genome Browser custom track)
Alignm length:	217
Alignm identity:	179
Alignm E-value:	0
Alignm gaps (pig, cow):	39, 81
Conread position:	48-213
Cow position:	chrX:14135915-14135737 (view UCSC Genome Browser custom track)
Alignm length:	179
Alignm identity:	133
Alignm E-value:	2e-24
Alignm gaps (pig, cow):	38, 0
Conread position:	48-229
Cow position:	chrX:46068524-46068716 (view UCSC Genome Browser custom track)
Alignm length:	194
Alignm identity:	142
Alignm E-value:	5e-25
Alignm gaps (pig, cow):	36, 123
Conread position:	48-241
Cow position:	chrX:41858644-41858850 (view UCSC Genome Browser custom track)
Alignm length:	208
Alignm identity:	154
Alignm E-value:	8e-29
Alignm gaps (pig, cow):	45, 200
Conread position:	48-250
Cow position:	chrX:20340417-20340621 (view UCSC Genome Browser custom track)
Alignm length:	206
Alignm identity:	157
Alignm E-value:	3e-39
Alignm gaps (pig, cow):	17, 98
Conread position:	48-253
Cow position:	chrX:6544485-6544276 (view UCSC Genome Browser custom track)
Alignm length:	213
Alignm identity:	165
Alignm E-value:	3e-40
Alignm gaps (pig, cow):	38, 165
Conread position:	48-258
Cow position:	chrX:6599536-6599768 (view UCSC Genome Browser custom track)
Alignm length:	235
Alignm identity:	177
Alignm E-value:	4e-32
Alignm gaps (pig, cow):	38, 17
Conread position:	48-261
Cow position:	chrX:42480068-42479844 (view UCSC Genome Browser custom track)
Alignm length:	225
Alignm identity:	173
Alignm E-value:	3e-40
Alignm gaps (pig, cow):	13, 0
Conread position:	48-276
Cow position:	chrX:19469280-19469510 (view UCSC Genome Browser custom track)
Alignm length:	234
Alignm identity:	177
Alignm E-value:	3.9937e-43
Alignm gaps (pig, cow):	89, 32
Conread position:	48-278
Cow position:	chrX:39353015-39352779 (view UCSC Genome Browser custom track)
Alignm length:	239
Alignm identity:	169
Alignm E-value:	3e-30
Alignm gaps (pig, cow):	11, 159
Conread position:	49-261
Cow position:	chrX:32910337-32910115 (view UCSC Genome Browser custom track)
Alignm length:	223
Alignm identity:	156
Alignm E-value:	2e-25
Alignm gaps (pig, cow):	13, 0
Conread position:	50-258
Cow position:	chrX:33001136-33000919 (view UCSC Genome Browser custom track)
Alignm length:	218
Alignm identity:	147
Alignm E-value:	1e-21
Alignm gaps (pig, cow):	36, 0