Cow genome map

Conread name: rcbl0_006057.y1

Conread position: 54-335
Cow position: chr1:24509726-24509448 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 195
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 145, 91

Conread position: 58-248
Cow position: chr1:40877836-40878023 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 31, 36

Conread position: 63-387
Cow position: chr1:69703201-69702881 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 235
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 78, 234

Conread position: 65-249
Cow position: chr1:26511286-26511470 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 77, 159

Conread position: 65-276
Cow position: chr1:80275630-80275840 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 162
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 77, 157

Conread position: 65-335
Cow position: chr1:65187887-65187617 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 158

Conread position: 65-335
Cow position: chr1:85000647-85000916 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 202
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 81, 161

Conread position: 65-337
Cow position: chr1:84760470-84760739 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 23

Conread position: 65-342
Cow position: chr1:57563073-57562798 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 200
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 77, 45

Conread position: 65-352
Cow position: chr1:6968851-6968566 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 18

Conread position: 65-395
Cow position: chr1:23086286-23086610 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 7

Conread position: 65-395
Cow position: chr1:81454659-81454336 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 10

Conread position: 66-342
Cow position: chr1:81491568-81491295 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 157

Conread position: 69-335
Cow position: chr1:83321411-83321682 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 69-348
Cow position: chr1:20806894-20807170 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 156

Conread position: 70-293
Cow position: chr1:57776647-57776418 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 166
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 75, 5

Conread position: 70-335
Cow position: chr1:40378213-40377952 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 194
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 7, 59

Conread position: 70-335
Cow position: chr1:92709243-92708977 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 5

Conread position: 74-364
Cow position: chr1:60860351-60860061 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 213

Conread position: 75-289
Cow position: chr1:28329601-28329814 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 162
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 67, 141

Conread position: 75-324
Cow position: chr1:31978852-31979100 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 45

Conread position: 75-342
Cow position: chr1:57357497-57357224 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 195
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 77, 216

Conread position: 75-342
Cow position: chr1:57893554-57893271 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 207
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 68, 0

Conread position: 75-344
Cow position: chr1:89915971-89915702 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 113

Conread position: 75-353
Cow position: chr1:13314169-13313894 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 208
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 117, 42

Conread position: 75-386
Cow position: chr1:61553978-61554291 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 150

Conread position: 75-396
Cow position: chr1:88972996-88973315 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 224
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 66, 116

Conread position: 76-321
Cow position: chr1:6309216-6309454 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 179
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 64, 74

Conread position: 76-323
Cow position: chr1:46389403-46389163 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 175
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 65, 75

Conread position: 76-323
Cow position: chr1:61606708-61606469 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 171
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 66, 75

Conread position: 76-323
Cow position: chr1:67902056-67902296 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 181
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 65, 75

Conread position: 76-324
Cow position: chr1:100046175-100045938 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 178
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 65, 75

Conread position: 76-332
Cow position: chr1:24763760-24764008 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 178
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 65, 46

Conread position: 76-334
Cow position: chr1:71087122-71086869 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 195
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 66, 44

Conread position: 76-334
Cow position: chr1:89407230-89407477 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 175
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 66, 92

Conread position: 76-334
Cow position: chr1:94744960-94744707 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 186
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 184, 68

Conread position: 76-334
Cow position: chr1:94761262-94761507 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 184
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 44, 22

Conread position: 76-339
Cow position: chr1:4279527-4279788 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 113

Conread position: 77-334
Cow position: chr1:55114781-55114525 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 120

Conread position: 78-323
Cow position: chr1:100397658-100397423 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 172
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 67, 73

Conread position: 78-334
Cow position: chr1:94754222-94753969 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 177
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 67, 72

Conread position: 80-379
Cow position: chr1:31126749-31127049 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 69

Conread position: 80-392
Cow position: chr1:13680891-13681209 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 216
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 72, 37

Conread position: 80-392
Cow position: chr1:57854593-57854279 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 212

Conread position: 80-392
Cow position: chr1:90845314-90845621 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 134

Conread position: 81-310
Cow position: chr1:64753509-64753277 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 33

Conread position: 81-342
Cow position: chr1:43588731-43588479 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 187
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 63, 82

Conread position: 84-385
Cow position: chr1:17092500-17092194 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 212
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 41, 160

Conread position: 85-342
Cow position: chr1:93392077-93391833 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 194
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 114, 45

Conread position: 86-334
Cow position: chr1:15983647-15983887 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 180
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 56, 77

Conread position: 93-339
Cow position: chr1:94408946-94409180 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 182
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 50, 108

Conread position: 94-315
Cow position: chr1:39638669-39638890 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 163
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 31, 44

Conread position: 94-381
Cow position: chr1:20264473-20264763 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 30

Conread position: 101-334
Cow position: chr1:70171420-70171647 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 166
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 41, 50

Conread position: 111-334
Cow position: chr1:35544305-35544525 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 31, 53

Conread position: 119-323
Cow position: chr1:24684293-24684493 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 23, 45

Conread position: 122-323
Cow position: chr1:7489131-7489325 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 18, 29

Conread position: 125-335
Cow position: chr1:13992620-13992411 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 159
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 28, 100

Conread position: 135-285
Cow position: chr1:13737960-13738112 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 7, 0

Conread position: 168-392
Cow position: chr1:23920788-23921008 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 174
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 88, 54

Conread position: 169-327
Cow position: chr1:8143001-8142839 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 117
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 84, 0

Conread position: 174-323
Cow position: chr1:97447457-97447307 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 86, 0

Conread position: 177-323
Cow position: chr1:41972841-41972987 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 27, 97

Conread position: 177-381
Cow position: chr1:4264623-4264829 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 153
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 7, 175

Conread position: 182-363
Cow position: chr1:70178284-70178102 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 145
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 75, 0

Conread position: 186-355
Cow position: chr1:33914192-33914362 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 70, 107

Conread position: 188-335
Cow position: chr1:86643055-86643201 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 13, 67

Conread position: 195-392
Cow position: chr1:41607440-41607244 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 153
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 62, 28

Conread position: 204-341
Cow position: chr1:83390621-83390761 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 56, 0

Conread position: 257-384
Cow position: chr1:78259321-78259450 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 103, 0

Show alignments to all cow chromosomes.