Cow genome map
| Conread name: | rcbl0_006057.y1 |
| Conread position: | 17-290 |
| Cow position: | chr16:10933132-10933413 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 201 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 49-330 |
| Cow position: | chr16:50508278-50507999 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 19 |
| Conread position: | 54-395 |
| Cow position: | chr16:17162607-17162950 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 276 |
| Conread position: | 58-395 |
| Cow position: | chr16:44460680-44460341 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 180 |
| Conread position: | 62-342 |
| Cow position: | chr16:34028401-34028107 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 79, 179 |
| Conread position: | 63-281 |
| Cow position: | chr16:14179873-14180085 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 8, 89 |
| Conread position: | 65-209 |
| Cow position: | chr16:15258403-15258260 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 129, 75 |
| Conread position: | 65-232 |
| Cow position: | chr16:35446071-35445902 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 65-292 |
| Cow position: | chr16:12092778-12093005 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 77, 158 |
| Conread position: | 65-312 |
| Cow position: | chr16:1631680-1631921 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 130, 49 |
| Conread position: | 65-312 |
| Cow position: | chr16:22243573-22243822 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 45, 10 |
| Conread position: | 65-312 |
| Cow position: | chr16:35415668-35415419 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 49 |
| Conread position: | 65-334 |
| Cow position: | chr16:24587021-24586753 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 199 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 134, 69 |
| Conread position: | 65-335 |
| Cow position: | chr16:21726047-21725787 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 129, 83 |
| Conread position: | 65-342 |
| Cow position: | chr16:40501556-40501832 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 160 |
| Conread position: | 65-393 |
| Cow position: | chr16:13513595-13513265 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 285 |
| Conread position: | 65-395 |
| Cow position: | chr16:412423-412102 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 45 |
| Conread position: | 65-395 |
| Cow position: | chr16:10178760-10179095 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 118 |
| Conread position: | 66-219 |
| Cow position: | chr16:16724934-16724779 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 67-296 |
| Cow position: | chr16:12004439-12004667 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 75, 155 |
| Conread position: | 67-296 |
| Cow position: | chr16:56209564-56209796 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 43 |
| Conread position: | 69-289 |
| Cow position: | chr16:13878022-13877796 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 75, 11 |
| Conread position: | 69-341 |
| Cow position: | chr16:49911079-49910806 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 71, 172 |
| Conread position: | 75-289 |
| Cow position: | chr16:52619539-52619321 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 66, 116 |
| Conread position: | 75-334 |
| Cow position: | chr16:35447499-35447245 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 67, 88 |
| Conread position: | 75-342 |
| Cow position: | chr16:43861308-43861038 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 243 |
| Conread position: | 75-394 |
| Cow position: | chr16:33435870-33435558 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 150 |
| Conread position: | 76-290 |
| Cow position: | chr16:7433758-7433552 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 66, 92 |
| Conread position: | 76-300 |
| Cow position: | chr16:47366589-47366373 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 180, 41 |
| Conread position: | 76-308 |
| Cow position: | chr16:5784218-5784445 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 66, 82 |
| Conread position: | 76-334 |
| Cow position: | chr16:4141224-4141494 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 69, 210 |
| Conread position: | 76-334 |
| Cow position: | chr16:6725386-6725137 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 65, 75 |
| Conread position: | 76-335 |
| Cow position: | chr16:11484859-11484603 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 38 |
| Conread position: | 76-336 |
| Cow position: | chr16:33439634-33439357 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 76-379 |
| Cow position: | chr16:48896008-48895709 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 137 |
| Conread position: | 76-391 |
| Cow position: | chr16:571213-571518 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 41 |
| Conread position: | 76-392 |
| Cow position: | chr16:37100962-37100654 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 95 |
| Conread position: | 77-334 |
| Cow position: | chr16:55132725-55132475 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 64, 75 |
| Conread position: | 78-296 |
| Cow position: | chr16:33874984-33874763 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 11, 16 |
| Conread position: | 79-335 |
| Cow position: | chr16:33531208-33531456 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 73, 133 |
| Conread position: | 79-342 |
| Cow position: | chr16:40511226-40511478 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 178, 103 |
| Conread position: | 80-282 |
| Cow position: | chr16:35291432-35291231 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 64, 142 |
| Conread position: | 80-330 |
| Cow position: | chr16:32453952-32454203 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 119, 58 |
| Conread position: | 80-335 |
| Cow position: | chr16:16076530-16076284 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 64, 130 |
| Conread position: | 80-335 |
| Cow position: | chr16:16088166-16087920 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 64, 130 |
| Conread position: | 80-381 |
| Cow position: | chr16:10669258-10669561 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 130 |
| Conread position: | 80-392 |
| Cow position: | chr16:40522223-40521911 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 71 |
| Conread position: | 81-337 |
| Cow position: | chr16:33710860-33710616 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 25, 31 |
| Conread position: | 81-392 |
| Cow position: | chr16:33377254-33377555 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 66 |
| Conread position: | 86-335 |
| Cow position: | chr16:3160250-3160003 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 57, 157 |
| Conread position: | 122-332 |
| Cow position: | chr16:17734267-17734469 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 138, 28 |
| Conread position: | 122-334 |
| Cow position: | chr16:48800083-48799878 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 167-312 |
| Cow position: | chr16:19263104-19262960 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 32, 57 |
| Conread position: | 169-323 |
| Cow position: | chr16:40415574-40415729 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 170-323 |
| Cow position: | chr16:23385866-23385712 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 65 |
| Conread position: | 186-330 |
| Cow position: | chr16:23923590-23923736 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 186-335 |
| Cow position: | chr16:15258260-15258113 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 218-334 |
| Cow position: | chr16:10764241-10764123 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
Show alignments to all cow chromosomes.