Cow genome map
| Conread name: | rcbl0_006057.y1 |
| Conread position: | 50-336 |
| Cow position: | chr3:60281270-60281555 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 92, 5 |
| Conread position: | 52-335 |
| Cow position: | chr3:85149755-85150047 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 24, 133 |
| Conread position: | 57-395 |
| Cow position: | chr3:19696267-19696590 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 20, 11 |
| Conread position: | 58-395 |
| Cow position: | chr3:28692420-28692096 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 166 |
| Conread position: | 60-335 |
| Cow position: | chr3:49005983-49006257 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 85, 60 |
| Conread position: | 60-342 |
| Cow position: | chr3:2059673-2059950 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 85, 164 |
| Conread position: | 61-392 |
| Cow position: | chr3:10215432-10215759 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 161 |
| Conread position: | 63-395 |
| Cow position: | chr3:6762596-6762250 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 277 |
| Conread position: | 65-290 |
| Cow position: | chr3:82508548-82508320 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 77, 117 |
| Conread position: | 65-292 |
| Cow position: | chr3:28593426-28593208 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 79, 42 |
| Conread position: | 65-312 |
| Cow position: | chr3:45838659-45838909 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 9 |
| Conread position: | 65-320 |
| Cow position: | chr3:83785887-83785625 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 199 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 76, 244 |
| Conread position: | 65-327 |
| Cow position: | chr3:28724514-28724764 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 56, 85 |
| Conread position: | 65-330 |
| Cow position: | chr3:3251280-3251543 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 23, 164 |
| Conread position: | 65-334 |
| Cow position: | chr3:28500683-28500950 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 77, 156 |
| Conread position: | 65-355 |
| Cow position: | chr3:59205282-59205576 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 65-363 |
| Cow position: | chr3:11030625-11030339 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 6, 12 |
| Conread position: | 66-312 |
| Cow position: | chr3:14932986-14933233 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 75, 157 |
| Conread position: | 67-292 |
| Cow position: | chr3:41158546-41158770 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 75, 155 |
| Conread position: | 67-342 |
| Cow position: | chr3:84919023-84919298 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 223 |
| Conread position: | 67-395 |
| Cow position: | chr3:49850268-49849938 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 96 |
| Conread position: | 74-304 |
| Cow position: | chr3:42257082-42257321 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 14, 49 |
| Conread position: | 75-216 |
| Cow position: | chr3:36781705-36781562 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 75-327 |
| Cow position: | chr3:56308529-56308283 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 95 |
| Conread position: | 75-342 |
| Cow position: | chr3:33020800-33020534 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 197 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 67, 192 |
| Conread position: | 76-277 |
| Cow position: | chr3:42936498-42936305 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 76-322 |
| Cow position: | chr3:3253992-3253753 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 68, 75 |
| Conread position: | 76-323 |
| Cow position: | chr3:28443538-28443778 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 66, 75 |
| Conread position: | 76-323 |
| Cow position: | chr3:32168146-32168384 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 65, 75 |
| Conread position: | 76-323 |
| Cow position: | chr3:35352808-35352576 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 76-330 |
| Cow position: | chr3:48091355-48091108 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 187 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 68, 92 |
| Conread position: | 76-330 |
| Cow position: | chr3:81386995-81387245 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 65, 75 |
| Conread position: | 76-333 |
| Cow position: | chr3:60067567-60067839 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 76-334 |
| Cow position: | chr3:7812463-7812712 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 66, 75 |
| Conread position: | 76-334 |
| Cow position: | chr3:34398963-34399209 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 66, 75 |
| Conread position: | 76-334 |
| Cow position: | chr3:77333151-77332902 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 39, 88 |
| Conread position: | 76-334 |
| Cow position: | chr3:78549079-78548826 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 190 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 65, 74 |
| Conread position: | 76-342 |
| Cow position: | chr3:22697009-22696739 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 154 |
| Conread position: | 76-343 |
| Cow position: | chr3:14296051-14296311 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 68, 74 |
| Conread position: | 76-395 |
| Cow position: | chr3:9195236-9194900 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 68, 15 |
| Conread position: | 78-336 |
| Cow position: | chr3:28464902-28464644 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 22 |
| Conread position: | 80-297 |
| Cow position: | chr3:82515935-82515718 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 61, 69 |
| Conread position: | 80-336 |
| Cow position: | chr3:7810508-7810259 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 191 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 65, 99 |
| Conread position: | 80-364 |
| Cow position: | chr3:10688211-10687926 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 252 |
| Conread position: | 80-381 |
| Cow position: | chr3:17642085-17641772 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 176, 112 |
| Conread position: | 80-395 |
| Cow position: | chr3:1839460-1839776 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 75 |
| Conread position: | 80-395 |
| Cow position: | chr3:65526257-65525944 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 72 |
| Conread position: | 80-396 |
| Cow position: | chr3:6049334-6049648 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 69 |
| Conread position: | 81-330 |
| Cow position: | chr3:22698886-22699128 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 21, 32 |
| Conread position: | 81-334 |
| Cow position: | chr3:28207530-28207774 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 61, 87 |
| Conread position: | 81-334 |
| Cow position: | chr3:28485258-28485502 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 179, 86 |
| Conread position: | 83-334 |
| Cow position: | chr3:31360424-31360180 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 58, 79 |
| Conread position: | 84-304 |
| Cow position: | chr3:77943672-77943888 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 47, 67 |
| Conread position: | 84-335 |
| Cow position: | chr3:6190034-6190285 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 58, 215 |
| Conread position: | 84-363 |
| Cow position: | chr3:5534196-5534457 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 68, 132 |
| Conread position: | 84-382 |
| Cow position: | chr3:11952876-11952581 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 246 |
| Conread position: | 94-336 |
| Cow position: | chr3:24772969-24773232 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 50, 240 |
| Conread position: | 105-335 |
| Cow position: | chr3:23846533-23846760 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 152, 39 |
| Conread position: | 119-334 |
| Cow position: | chr3:6645326-6645533 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 141, 25 |
| Conread position: | 121-330 |
| Cow position: | chr3:48095471-48095266 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 25, 43 |
| Conread position: | 122-334 |
| Cow position: | chr3:84955020-84954814 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 29 |
| Conread position: | 124-312 |
| Cow position: | chr3:25899373-25899182 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 127-342 |
| Cow position: | chr3:36783631-36783419 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 130, 23 |
| Conread position: | 141-335 |
| Cow position: | chr3:5619156-5619342 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 115, 32 |
| Conread position: | 167-381 |
| Cow position: | chr3:74711093-74711306 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 56, 164 |
| Conread position: | 169-334 |
| Cow position: | chr3:29705385-29705547 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 91, 11 |
| Conread position: | 170-335 |
| Cow position: | chr3:48573165-48573333 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 183-334 |
| Cow position: | chr3:34868182-34868334 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 12, 120 |
| Conread position: | 190-395 |
| Cow position: | chr3:7830598-7830393 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 67, 139 |
| Conread position: | 196-417 |
| Cow position: | chr3:2306474-2306250 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 169, 132 |
| Conread position: | 218-334 |
| Cow position: | chr3:48037530-48037412 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 226-380 |
| Cow position: | chr3:44437952-44437798 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 31, 97 |
Show alignments to all cow chromosomes.