Cow genome map

Conread name: rcbl0_008623.y1

Conread position: 1-127
Cow position: chrX:11859462-11859336 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 97
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 71, 11

Conread position: 1-143
Cow position: chrX:8731168-8731310 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-143
Cow position: chrX:10237838-10237697 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 1-148
Cow position: chrX:46533230-46533083 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-150
Cow position: chrX:35681642-35681790 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 71, 0

Conread position: 1-151
Cow position: chrX:1122472-1122323 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 131, 0

Conread position: 1-151
Cow position: chrX:11653845-11653991 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 69, 0

Conread position: 1-151
Cow position: chrX:27074976-27074827 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 83, 61

Conread position: 1-152
Cow position: chrX:4645838-4645689 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 13

Conread position: 1-152
Cow position: chrX:10516328-10516479 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-152
Cow position: chrX:19761829-19761974 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 80, 0

Conread position: 1-152
Cow position: chrX:29478798-29478947 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 77, 0

Conread position: 1-152
Cow position: chrX:37867507-37867658 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 1-152
Cow position: chrX:44339250-44339096 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 89, 131

Conread position: 1-154
Cow position: chrX:41166750-41166602 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 1-155
Cow position: chrX:296466-296620 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 111
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chrX:1960350-1960197 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 85, 0

Conread position: 1-155
Cow position: chrX:2314544-2314390 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chrX:3806757-3806907 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 151, 67

Conread position: 1-155
Cow position: chrX:17231810-17231965 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 51, 0

Conread position: 1-155
Cow position: chrX:24170654-24170497 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 61, 16

Conread position: 1-155
Cow position: chrX:24365746-24365594 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 1-155
Cow position: chrX:28067925-28068079 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chrX:30962802-30962647 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 51, 0

Conread position: 1-155
Cow position: chrX:36866248-36866401 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 32, 0

Conread position: 1-155
Cow position: chrX:37867328-37867482 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chrX:42760327-42760481 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chrX:42855533-42855691 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 73, 0

Conread position: 1-155
Cow position: chrX:43150506-43150659 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 21, 13

Conread position: 1-155
Cow position: chrX:44054877-44055031 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chrX:46068684-46068536 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 65, 0

Conread position: 1-155
Cow position: chrX:46587897-46588048 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 59, 0

Conread position: 1-156
Cow position: chrX:4109259-4109414 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-157
Cow position: chrX:17524309-17524153 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-157
Cow position: chrX:23335901-23335745 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 1-157
Cow position: chrX:42506874-42506716 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 21, 15

Conread position: 1-158
Cow position: chrX:21327988-21328145 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 21, 13

Conread position: 1-159
Cow position: chrX:25035307-25035149 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 1-159
Cow position: chrX:27705661-27705819 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 21, 13

Conread position: 1-159
Cow position: chrX:35409827-35409984 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 27, 0

Conread position: 1-161
Cow position: chrX:6480521-6480361 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 114
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-162
Cow position: chrX:38549522-38549682 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 143, 92

Conread position: 1-163
Cow position: chrX:33678398-33678234 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 49, 0

Conread position: 1-164
Cow position: chrX:3542931-3543102 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 69, 0

Conread position: 1-164
Cow position: chrX:4602863-4602699 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 155, 5

Conread position: 1-164
Cow position: chrX:34398709-34398546 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-165
Cow position: chrX:20168633-20168792 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 1-165
Cow position: chrX:26843194-26843028 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 119
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 21, 13

Conread position: 1-166
Cow position: chrX:32574392-32574561 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 131, 92

Conread position: 1-167
Cow position: chrX:4091999-4092161 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 126, 0

Conread position: 1-167
Cow position: chrX:10278945-10279115 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 72, 67

Conread position: 1-167
Cow position: chrX:11674185-11674353 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 21, 13

Conread position: 1-167
Cow position: chrX:16763850-16763691 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 82, 0

Conread position: 1-167
Cow position: chrX:22115242-22115073 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 64, 72

Conread position: 1-167
Cow position: chrX:23359039-23358877 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 118
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 79, 0

Conread position: 1-167
Cow position: chrX:34554798-34554965 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 154, 0

Conread position: 1-167
Cow position: chrX:35658871-35659034 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 126, 0

Conread position: 1-167
Cow position: chrX:43008684-43008854 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 150, 0

Conread position: 1-167
Cow position: chrX:45044527-45044695 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 61, 0

Conread position: 1-167
Cow position: chrX:48558821-48558986 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 108, 0

Conread position: 1-167
Cow position: chrX:48574282-48574113 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 71, 0

Conread position: 1-168
Cow position: chrX:4328108-4327941 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 128, 50

Conread position: 1-168
Cow position: chrX:4632782-4632612 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 134
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 43, 0

Conread position: 1-168
Cow position: chrX:8917469-8917636 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 115
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-168
Cow position: chrX:11781526-11781686 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 6, 61

Conread position: 1-168
Cow position: chrX:34420809-34420977 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 69, 86

Conread position: 1-168
Cow position: chrX:42449939-42449769 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 133
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 151, 0

Conread position: 1-169
Cow position: chrX:51826-51660 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 61, 0

Conread position: 1-169
Cow position: chrX:1101632-1101794 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 150, 58

Conread position: 1-169
Cow position: chrX:4403392-4403561 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 121
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 161, 0

Conread position: 1-169
Cow position: chrX:4559808-4559977 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 152, 0

Conread position: 1-169
Cow position: chrX:12095697-12095528 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 132
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 152, 0

Conread position: 1-169
Cow position: chrX:16770139-16770307 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-169
Cow position: chrX:19203271-19203102 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 120
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 152, 0

Conread position: 1-169
Cow position: chrX:25815826-25815654 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 90, 44

Conread position: 1-169
Cow position: chrX:26882005-26881835 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 155, 0

Conread position: 1-169
Cow position: chrX:34194006-34193839 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 159, 0

Conread position: 1-169
Cow position: chrX:37955922-37956088 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 160, 125

Conread position: 1-169
Cow position: chrX:38321307-38321142 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 61, 0

Conread position: 1-169
Cow position: chrX:41010973-41011132 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 58, 0

Conread position: 1-169
Cow position: chrX:41435474-41435300 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 85, 0

Conread position: 1-169
Cow position: chrX:41790354-41790185 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 71, 0

Conread position: 1-169
Cow position: chrX:41941698-41941865 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 132
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 95, 0

Conread position: 1-169
Cow position: chrX:42894001-42894164 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 72, 83

Conread position: 1-169
Cow position: chrX:47100522-47100351 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 135
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 77, 0

Conread position: 1-170
Cow position: chrX:4268989-4268827 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 57, 0

Conread position: 1-170
Cow position: chrX:35392223-35392061 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 153, 60

Conread position: 1-170
Cow position: chrX:41454879-41454710 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 121
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-170
Cow position: chrX:46532420-46532248 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 67, 163

Conread position: 1-171
Cow position: chrX:8642121-8642288 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 139
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 13, 0

Conread position: 1-171
Cow position: chrX:36367860-36367691 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 121
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 152, 0

Conread position: 1-172
Cow position: chrX:9451420-9451586 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 81, 34

Conread position: 1-172
Cow position: chrX:11633757-11633930 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 152, 67

Conread position: 1-172
Cow position: chrX:12290794-12290965 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 150, 82

Conread position: 1-172
Cow position: chrX:15231585-15231413 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 13

Conread position: 1-172
Cow position: chrX:42086902-42087072 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 161, 118

Conread position: 1-173
Cow position: chrX:16801188-16801020 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 135
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 152, 16

Conread position: 1-173
Cow position: chrX:28106922-28107092 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 135
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 82, 0

Conread position: 1-173
Cow position: chrX:30789456-30789281 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 21, 13

Conread position: 1-173
Cow position: chrX:40680689-40680860 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 159, 0

Conread position: 1-175
Cow position: chrX:13122013-13122194 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 140
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 42, 0

Conread position: 1-175
Cow position: chrX:13923939-13924108 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 80, 0

Conread position: 1-176
Cow position: chrX:27175073-27175248 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 115, 161

Conread position: 1-176
Cow position: chrX:42247107-42246931 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 135
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 171, 0

Conread position: 1-177
Cow position: chrX:35285248-35285427 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 150, 0

Conread position: 1-178
Cow position: chrX:24331851-24332029 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 152, 0

Conread position: 1-179
Cow position: chrX:35431164-35430988 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 125
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 155, 36

Conread position: 1-179
Cow position: chrX:44225656-44225475 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 159, 0

Conread position: 1-181
Cow position: chrX:14925347-14925530 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 153, 0

Conread position: 1-183
Cow position: chrX:20339817-20339639 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 142
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 177, 13

Conread position: 1-183
Cow position: chrX:21672635-21672823 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 68, 0

Conread position: 1-183
Cow position: chrX:34441379-34441194 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 152, 0

Conread position: 1-186
Cow position: chrX:33466699-33466882 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 145
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 98, 60

Conread position: 1-187
Cow position: chrX:29451476-29451289 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 43, 161

Conread position: 1-187
Cow position: chrX:41215397-41215586 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 128
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 159, 0

Conread position: 1-189
Cow position: chrX:33654769-33654582 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 153, 171

Conread position: 1-189
Cow position: chrX:40336985-40337176 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 149
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 21, 13

Conread position: 1-189
Cow position: chrX:42836256-42836441 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 68, 0

Conread position: 1-192
Cow position: chrX:39180158-39179969 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 1-195
Cow position: chrX:15545957-15546151 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 150, 59

Conread position: 1-203
Cow position: chrX:11589292-11589095 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 146
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 91, 0

Conread position: 1-204
Cow position: chrX:22283912-22284113 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 44, 171

Conread position: 2-152
Cow position: chrX:13347349-13347494 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 2-155
Cow position: chrX:11670762-11670915 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 2-156
Cow position: chrX:42875288-42875438 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 68, 0

Conread position: 2-159
Cow position: chrX:34108282-34108126 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 108, 0

Conread position: 2-166
Cow position: chrX:6407619-6407780 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 146, 0

Conread position: 2-167
Cow position: chrX:10415177-10415013 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 117
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 158, 0

Conread position: 2-167
Cow position: chrX:26205372-26205217 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 66, 0

Conread position: 2-168
Cow position: chrX:35885651-35885489 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 152, 58

Conread position: 2-168
Cow position: chrX:41027235-41027402 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 152, 0

Conread position: 2-169
Cow position: chrX:27442463-27442296 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 2-169
Cow position: chrX:30958806-30958970 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 125, 0

Conread position: 2-169
Cow position: chrX:31729518-31729681 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 149, 58

Conread position: 2-169
Cow position: chrX:35276061-35276232 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 149, 0

Conread position: 2-172
Cow position: chrX:27261268-27261437 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 151, 77

Conread position: 2-175
Cow position: chrX:36976027-36976197 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 122
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 152, 125

Conread position: 2-177
Cow position: chrX:31250464-31250643 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 120, 0

Conread position: 2-185
Cow position: chrX:31489596-31489779 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 131
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 2-186
Cow position: chrX:30672314-30672125 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 68, 0

Conread position: 2-195
Cow position: chrX:3580020-3580211 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 135
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 162, 0

Conread position: 3-155
Cow position: chrX:17956767-17956917 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 3-158
Cow position: chrX:22552902-22552748 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 122, 0

Conread position: 3-169
Cow position: chrX:26720605-26720448 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 75, 0

Conread position: 3-169
Cow position: chrX:46909892-46910053 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 148, 64

Conread position: 3-179
Cow position: chrX:19000203-19000380 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 20, 11

Conread position: 4-148
Cow position: chrX:31986494-31986351 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 4-153
Cow position: chrX:38967966-38968121 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 18, 10

Conread position: 4-154
Cow position: chrX:11602407-11602260 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 123, 0

Conread position: 4-155
Cow position: chrX:17498400-17498551 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 18, 10

Conread position: 4-155
Cow position: chrX:26979713-26979563 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 55, 118

Conread position: 4-161
Cow position: chrX:36283418-36283574 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 41, 0

Conread position: 4-163
Cow position: chrX:28167057-28167215 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 23, 13

Conread position: 4-165
Cow position: chrX:27508946-27508786 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 65, 35

Conread position: 4-169
Cow position: chrX:20345528-20345697 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 147, 0

Conread position: 4-169
Cow position: chrX:37717800-37717964 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 159, 10

Conread position: 4-172
Cow position: chrX:19018753-19018583 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 122
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 84, 0

Conread position: 4-179
Cow position: chrX:7648332-7648160 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 69, 42

Conread position: 5-144
Cow position: chrX:44995578-44995717 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 5-167
Cow position: chrX:1938093-1938252 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 66, 0

Conread position: 5-169
Cow position: chrX:27446765-27446925 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 117
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 89, 0

Conread position: 5-192
Cow position: chrX:40457478-40457297 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 65, 25

Conread position: 6-139
Cow position: chrX:12309306-12309173 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 6-155
Cow position: chrX:35509599-35509452 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 64, 0

Conread position: 7-186
Cow position: chrX:37844076-37844256 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 45, 144

Conread position: 10-166
Cow position: chrX:1996368-1996212 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 10-168
Cow position: chrX:4399203-4399358 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 14-170
Cow position: chrX:42314805-42314646 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 8, 0

Conread position: 17-170
Cow position: chrX:25207766-25207618 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 58, 0

Conread position: 20-155
Cow position: chrX:8759715-8759851 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 111
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 24, 0

Conread position: 20-169
Cow position: chrX:36962844-36962993 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 35, 43

Conread position: 21-151
Cow position: chrX:10479844-10479974 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 21-165
Cow position: chrX:876752-876609 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 81, 0

Conread position: 21-166
Cow position: chrX:39887119-39886972 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 47, 0

Conread position: 21-167
Cow position: chrX:29723846-29723991 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 27, 0

Conread position: 21-167
Cow position: chrX:42165519-42165379 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 21-168
Cow position: chrX:19356558-19356705 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 120
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 21-169
Cow position: chrX:41199322-41199463 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 22-143
Cow position: chrX:28836981-28837100 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 98, 0

Conread position: 22-154
Cow position: chrX:32910195-32910324 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 22-159
Cow position: chrX:597383-597246 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 22-166
Cow position: chrX:42159037-42159180 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 138, 0

Conread position: 23-159
Cow position: chrX:26367606-26367469 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 131, 0

Conread position: 23-167
Cow position: chrX:41194002-41194143 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 106, 21

Conread position: 26-144
Cow position: chrX:40583214-40583096 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 26-166
Cow position: chrX:6559357-6559215 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 128, 0

Conread position: 26-210
Cow position: chrX:13135450-13135276 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 170, 54

Conread position: 26-232
Cow position: chrX:783544-783749 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 143
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 165, 131

Conread position: 28-168
Cow position: chrX:5063340-5063476 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 33-170
Cow position: chrX:48020025-48019887 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 103
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 123, 0

Conread position: 34-162
Cow position: chrX:44040284-44040412 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 41-169
Cow position: chrX:32590291-32590164 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 119, 0

Conread position: 43-158
Cow position: chrX:23185221-23185106 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 43-165
Cow position: chrX:16532623-16532747 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 91, 113

Conread position: 43-166
Cow position: chrX:19162014-19161892 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 117, 0

Conread position: 43-167
Cow position: chrX:6855976-6856101 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 110, 0

Conread position: 43-168
Cow position: chrX:36039141-36039267 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 96
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 43-169
Cow position: chrX:42220585-42220459 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 43-171
Cow position: chrX:11781362-11781496 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 44-206
Cow position: chrX:18196116-18196273 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 127
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 92, 116

Show alignments to all cow chromosomes.