Non-Coding RNA Search

Cow genome map


           Conread name:
           rcbl0_009068.y1
        

               Conread position:
               3-234
               

               Cow position:
               chr1:68676268-68676503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               171
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               42, 110
               

               Conread position:
               4-212
               

               Cow position:
               chr1:65103527-65103734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               58, 164
               

               Conread position:
               6-200
               

               Cow position:
               chr1:81355799-81355596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               146
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               6-275
               

               Cow position:
               chr1:47886576-47886286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               39, 127
               

               Conread position:
               6-289
               

               Cow position:
               chr1:52467211-52467493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               189
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               39, 134
               

               Conread position:
               6-298
               

               Cow position:
               chr1:44506878-44507185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               216
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               6-319
               

               Cow position:
               chr1:30066527-30066841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               209
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               42, 119
               

               Conread position:
               7-201
               

               Cow position:
               chr1:92433911-92434108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               141
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               41, 93
               

               Conread position:
               7-212
               

               Cow position:
               chr1:57420816-57420617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               147
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               41, 64
               

               Conread position:
               7-228
               

               Cow position:
               chr1:26895065-26894835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               163
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               38, 27
               

               Conread position:
               7-228
               

               Cow position:
               chr1:31272530-31272308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               38, 54
               

               Conread position:
               7-231
               

               Cow position:
               chr1:65909438-65909648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               38, 64
               

               Conread position:
               7-233
               

               Cow position:
               chr1:100569065-100569296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               7-244
               

               Cow position:
               chr1:33409714-33409472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               7-244
               

               Cow position:
               chr1:91816861-91816617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               164
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               7-291
               

               Cow position:
               chr1:78066629-78066333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               193
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               7-301
               

               Cow position:
               chr1:63390860-63390545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               38, 292
               

               Conread position:
               8-228
               

               Cow position:
               chr1:84255676-84255902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               37, 5
               

               Conread position:
               9-216
               

               Cow position:
               chr1:30441869-30442079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               9-294
               

               Cow position:
               chr1:78791393-78791114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               191
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               36, 165
               

               Conread position:
               9-296
               

               Cow position:
               chr1:93110708-93110417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               206
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               36, 88
               

               Conread position:
               9-296
               

               Cow position:
               chr1:97622295-97622024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               194
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               151, 39
               

               Conread position:
               9-304
               

               Cow position:
               chr1:66355803-66355510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               34, 123
               

               Conread position:
               10-212
               

               Cow position:
               chr1:6972443-6972645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               160
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               35, 72
               

               Conread position:
               10-292
               

               Cow position:
               chr1:78079634-78079934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               35, 207
               

               Conread position:
               11-178
               

               Cow position:
               chr1:98310983-98311157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               11-182
               

               Cow position:
               chr1:101946795-101946625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               123
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               34, 68
               

               Conread position:
               11-211
               

               Cow position:
               chr1:76470570-76470761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               160
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               34, 55
               

               Conread position:
               11-211
               

               Cow position:
               chr1:94226637-94226436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               153
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               49, 40
               

               Conread position:
               11-226
               

               Cow position:
               chr1:97696657-97696875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               34, 134
               

               Conread position:
               11-231
               

               Cow position:
               chr1:90868526-90868309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               34, 182
               

               Conread position:
               11-234
               

               Cow position:
               chr1:34771589-34771362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               171
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               11-234
               

               Cow position:
               chr1:58186660-58186893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               11-244
               

               Cow position:
               chr1:1499776-1499539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               59, 68
               

               Conread position:
               11-244
               

               Cow position:
               chr1:53374346-53374581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               34, 91
               

               Conread position:
               11-287
               

               Cow position:
               chr1:72011894-72011616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               34, 58
               

               Conread position:
               11-291
               

               Cow position:
               chr1:484551-484253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               202
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               11-292
               

               Cow position:
               chr1:15333799-15334100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               34, 138
               

               Conread position:
               11-293
               

               Cow position:
               chr1:627876-628180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               220
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               34, 72
               

               Conread position:
               11-305
               

               Cow position:
               chr1:43855216-43855512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               216
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               34, 126
               

               Conread position:
               11-334
               

               Cow position:
               chr1:72105326-72105655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               240
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               34, 104
               

               Conread position:
               12-275
               

               Cow position:
               chr1:3607726-3607989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               33, 75
               

               Conread position:
               13-213
               

               Cow position:
               chr1:84240809-84241000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               35, 105
               

               Conread position:
               13-244
               

               Cow position:
               chr1:56225383-56225620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               162
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               32, 226
               

               Conread position:
               14-231
               

               Cow position:
               chr1:83747859-83748079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               51, 6
               

               Conread position:
               14-233
               

               Cow position:
               chr1:4032546-4032774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               15-231
               

               Cow position:
               chr1:68672681-68672464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               30, 108
               

               Conread position:
               15-301
               

               Cow position:
               chr1:43548139-43547849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               205
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               11, 102
               

               Conread position:
               16-179
               

               Cow position:
               chr1:89485496-89485666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               16-230
               

               Cow position:
               chr1:52956173-52956388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               29, 126
               

               Conread position:
               16-231
               

               Cow position:
               chr1:55357365-55357156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               150
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               29, 66
               

               Conread position:
               16-280
               

               Cow position:
               chr1:42555183-42555442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               29, 185
               

               Conread position:
               16-297
               

               Cow position:
               chr1:12222684-12222388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               29, 62
               

               Conread position:
               16-298
               

               Cow position:
               chr1:21955452-21955155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               36, 86
               

               Conread position:
               16-298
               

               Cow position:
               chr1:70422225-70422519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               29, 80
               

               Conread position:
               16-306
               

               Cow position:
               chr1:51770008-51770307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               196
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               29, 253
               

               Conread position:
               16-333
               

               Cow position:
               chr1:60032678-60032361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               204
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               34, 143
               

               Conread position:
               17-168
               

               Cow position:
               chr1:4374418-4374262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               28, 38
               

               Conread position:
               17-174
               

               Cow position:
               chr1:61560806-61560642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               120
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               17-176
               

               Cow position:
               chr1:102647351-102647190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               17-190
               

               Cow position:
               chr1:55146723-55146895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               28, 53
               

               Conread position:
               17-193
               

               Cow position:
               chr1:40482482-40482313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               133
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               122, 19
               

               Conread position:
               17-195
               

               Cow position:
               chr1:43703328-43703511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               17-197
               

               Cow position:
               chr1:56635016-56635202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               134
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               28, 80
               

               Conread position:
               17-198
               

               Cow position:
               chr1:45288951-45288766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               17-203
               

               Cow position:
               chr1:89349883-89350075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               139
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               17-204
               

               Cow position:
               chr1:45670559-45670743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               47, 18
               

               Conread position:
               17-206
               

               Cow position:
               chr1:60281291-60281486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               17-207
               

               Cow position:
               chr1:61542997-61542805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               17-209
               

               Cow position:
               chr1:43822321-43822515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               26, 105
               

               Conread position:
               17-210
               

               Cow position:
               chr1:53425096-53425294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               17-210
               

               Cow position:
               chr1:93810350-93810546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               17-211
               

               Cow position:
               chr1:18780415-18780211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               149
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               51, 28
               

               Conread position:
               17-212
               

               Cow position:
               chr1:3352773-3352581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               64, 18
               

               Conread position:
               17-212
               

               Cow position:
               chr1:8349394-8349205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               45, 29
               

               Conread position:
               17-212
               

               Cow position:
               chr1:30418117-30417929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               121, 37
               

               Conread position:
               17-212
               

               Cow position:
               chr1:92989510-92989709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               17-213
               

               Cow position:
               chr1:75933193-75933386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               28, 53
               

               Conread position:
               17-213
               

               Cow position:
               chr1:100706054-100706246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               28, 64
               

               Conread position:
               17-214
               

               Cow position:
               chr1:87936820-87937016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               28, 163
               

               Conread position:
               17-221
               

               Cow position:
               chr1:89076708-89076505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               28, 45
               

               Conread position:
               17-226
               

               Cow position:
               chr1:90976164-90975956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               31, 55
               

               Conread position:
               17-226
               

               Cow position:
               chr1:94261463-94261668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               30, 15
               

               Conread position:
               17-227
               

               Cow position:
               chr1:71796393-71796177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               46, 29
               

               Conread position:
               17-227
               

               Cow position:
               chr1:98511849-98512060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               28, 175
               

               Conread position:
               17-228
               

               Cow position:
               chr1:7023041-7023256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               49, 31
               

               Conread position:
               17-228
               

               Cow position:
               chr1:80422201-80422407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               158
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               38, 53
               

               Conread position:
               17-229
               

               Cow position:
               chr1:46783240-46783446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               64, 28
               

               Conread position:
               17-229
               

               Cow position:
               chr1:55818982-55819177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               151
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               17-230
               

               Cow position:
               chr1:31390671-31390452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               155
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               28, 207
               

               Conread position:
               17-231
               

               Cow position:
               chr1:24778065-24777857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               157
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               17-231
               

               Cow position:
               chr1:33996997-33996786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               28, 35
               

               Conread position:
               17-231
               

               Cow position:
               chr1:52912977-52912760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               152
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               17, 8
               

               Conread position:
               17-231
               

               Cow position:
               chr1:52994941-52995164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               17-231
               

               Cow position:
               chr1:68763762-68763551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               148
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               64, 120
               

               Conread position:
               17-231
               

               Cow position:
               chr1:95153140-95153360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               28, 99
               

               Conread position:
               17-233
               

               Cow position:
               chr1:89835170-89835391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               33, 148
               

               Conread position:
               17-234
               

               Cow position:
               chr1:77892063-77892277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               153
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               64, 48
               

               Conread position:
               17-234
               

               Cow position:
               chr1:78697849-78697632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               28, 87
               

               Conread position:
               17-241
               

               Cow position:
               chr1:89785832-89786060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               17-243
               

               Cow position:
               chr1:100421753-100421971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               28, 48
               

               Conread position:
               17-244
               

               Cow position:
               chr1:874571-874808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               17-244
               

               Cow position:
               chr1:6941384-6941617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               28, 49
               

               Conread position:
               17-244
               

               Cow position:
               chr1:6958797-6959030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               28, 49
               

               Conread position:
               17-244
               

               Cow position:
               chr1:12464745-12464515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               159
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               28, 205
               

               Conread position:
               17-244
               

               Cow position:
               chr1:14309114-14308878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               161
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               17-244
               

               Cow position:
               chr1:17196709-17196474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               31, 224
               

               Conread position:
               17-244
               

               Cow position:
               chr1:24133138-24132912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               28, 34
               

               Conread position:
               17-244
               

               Cow position:
               chr1:32001400-32001171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               168
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               33, 123
               

               Conread position:
               17-244
               

               Cow position:
               chr1:49082661-49082897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               17-244
               

               Cow position:
               chr1:49433340-49433110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               177
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               31, 45
               

               Conread position:
               17-244
               

               Cow position:
               chr1:49825149-49824914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               28, 224
               

               Conread position:
               17-244
               

               Cow position:
               chr1:66898576-66898343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               31, 43
               

               Conread position:
               17-244
               

               Cow position:
               chr1:72068918-72068680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               17-244
               

               Cow position:
               chr1:82337860-82337630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               28, 126
               

               Conread position:
               17-244
               

               Cow position:
               chr1:99642445-99642218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               28, 54
               

               Conread position:
               17-244
               

               Cow position:
               chr1:100474152-100474390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               17-260
               

               Cow position:
               chr1:76019775-76019529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               189
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               28, 123
               

               Conread position:
               17-273
               

               Cow position:
               chr1:4291081-4291347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               190
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               31, 127
               

               Conread position:
               17-274
               

               Cow position:
               chr1:77720314-77720067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               28, 49
               

               Conread position:
               17-274
               

               Cow position:
               chr1:78809801-78810073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               199
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               28, 60
               

               Conread position:
               17-285
               

               Cow position:
               chr1:38753841-38754121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               28, 197
               

               Conread position:
               17-286
               

               Cow position:
               chr1:71350802-71350519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               199
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               35, 15
               

               Conread position:
               17-287
               

               Cow position:
               chr1:7971336-7971610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               32, 54
               

               Conread position:
               17-287
               

               Cow position:
               chr1:20000830-20000550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               28, 15
               

               Conread position:
               17-288
               

               Cow position:
               chr1:56477508-56477792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               17-288
               

               Cow position:
               chr1:68826984-68826716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               197
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               28, 116
               

               Conread position:
               17-289
               

               Cow position:
               chr1:54478245-54478524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               202
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               25, 228
               

               Conread position:
               17-290
               

               Cow position:
               chr1:88913239-88913529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               28, 138
               

               Conread position:
               17-290
               

               Cow position:
               chr1:89510002-89509722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               28, 34
               

               Conread position:
               17-290
               

               Cow position:
               chr1:96472366-96472625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               193
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               28, 63
               

               Conread position:
               17-291
               

               Cow position:
               chr1:30047673-30047417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               28, 61
               

               Conread position:
               17-291
               

               Cow position:
               chr1:37322081-37321800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               28, 124
               

               Conread position:
               17-291
               

               Cow position:
               chr1:53520832-53521115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               9, 199
               

               Conread position:
               17-292
               

               Cow position:
               chr1:33331167-33330891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               187
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               28, 77
               

               Conread position:
               17-292
               

               Cow position:
               chr1:64302327-64302039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               35, 127
               

               Conread position:
               17-292
               

               Cow position:
               chr1:69695071-69694796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               207
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               28, 94
               

               Conread position:
               17-293
               

               Cow position:
               chr1:42869018-42868738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               204
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               22, 118
               

               Conread position:
               17-293
               

               Cow position:
               chr1:78794304-78794024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 53
               

               Conread position:
               17-293
               

               Cow position:
               chr1:87072618-87072907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               212
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               45, 29
               

               Conread position:
               17-294
               

               Cow position:
               chr1:39427081-39426804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               28, 54
               

               Conread position:
               17-294
               

               Cow position:
               chr1:41115794-41115523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               28, 55
               

               Conread position:
               17-294
               

               Cow position:
               chr1:43352737-43352439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               218
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               28, 109
               

               Conread position:
               17-294
               

               Cow position:
               chr1:48444273-48443978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               210
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               17-294
               

               Cow position:
               chr1:102349833-102349547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               203
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               28, 125
               

               Conread position:
               17-295
               

               Cow position:
               chr1:39418200-39417917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               206
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               31, 179
               

               Conread position:
               17-295
               

               Cow position:
               chr1:91066232-91065943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 138
               

               Conread position:
               17-296
               

               Cow position:
               chr1:22525796-22526089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               17-296
               

               Cow position:
               chr1:23512734-23512462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               203
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               64, 17
               

               Conread position:
               17-296
               

               Cow position:
               chr1:25734789-25735083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               206
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               17-296
               

               Cow position:
               chr1:43311855-43311557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               51, 29
               

               Conread position:
               17-296
               

               Cow position:
               chr1:45555285-45555580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               28, 181
               

               Conread position:
               17-297
               

               Cow position:
               chr1:68862955-68863235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               193
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               28, 15
               

               Conread position:
               17-298
               

               Cow position:
               chr1:6304942-6304660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               28, 193
               

               Conread position:
               17-298
               

               Cow position:
               chr1:21787251-21787541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               209
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               17-298
               

               Cow position:
               chr1:42541517-42541808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               17-298
               

               Cow position:
               chr1:43505445-43505741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               202
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               17-298
               

               Cow position:
               chr1:101834744-101835033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               64, 29
               

               Conread position:
               17-298
               

               Cow position:
               chr1:101866576-101866281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               44, 17
               

               Conread position:
               17-299
               

               Cow position:
               chr1:33206950-33206656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               222
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               45, 27
               

               Conread position:
               17-301
               

               Cow position:
               chr1:21954311-21954006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               217
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               28, 145
               

               Conread position:
               17-301
               

               Cow position:
               chr1:31934433-31934724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               203
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               28, 51
               

               Conread position:
               17-301
               

               Cow position:
               chr1:64804181-64803877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               217
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               48, 30
               

               Conread position:
               17-301
               

               Cow position:
               chr1:71045675-71045955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               198
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               28, 121
               

               Conread position:
               17-301
               

               Cow position:
               chr1:92996975-92996665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               45, 183
               

               Conread position:
               17-303
               

               Cow position:
               chr1:64572434-64572736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               211
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               28, 219
               

               Conread position:
               17-304
               

               Cow position:
               chr1:95056976-95057253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               45, 28
               

               Conread position:
               17-305
               

               Cow position:
               chr1:35162330-35162630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               17-305
               

               Cow position:
               chr1:36998116-36998406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               121, 36
               

               Conread position:
               17-306
               

               Cow position:
               chr1:101632418-101632126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               212
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               28, 197
               

               Conread position:
               17-307
               

               Cow position:
               chr1:24406973-24406688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               201
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               28, 48
               

               Conread position:
               17-307
               

               Cow position:
               chr1:75744781-75745085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               28, 222
               

               Conread position:
               17-307
               

               Cow position:
               chr1:82880565-82880856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 119
               

               Conread position:
               17-308
               

               Cow position:
               chr1:70538528-70538833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               17-311
               

               Cow position:
               chr1:34159758-34160057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 36
               

               Conread position:
               17-311
               

               Cow position:
               chr1:71666012-71665702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               221
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               48, 28
               

               Conread position:
               17-312
               

               Cow position:
               chr1:42482124-42482434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               214
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               28, 55
               

               Conread position:
               17-317
               

               Cow position:
               chr1:39225006-39224701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               31, 224
               

               Conread position:
               17-318
               

               Cow position:
               chr1:42545865-42545560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               222
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               28, 205
               

               Conread position:
               17-323
               

               Cow position:
               chr1:22730666-22730973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               121, 20
               

               Conread position:
               17-340
               

               Cow position:
               chr1:54156811-54156477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 28
               

               Conread position:
               18-211
               

               Cow position:
               chr1:34300628-34300433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               27, 44
               

               Conread position:
               18-212
               

               Cow position:
               chr1:27881534-27881726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               27, 63
               

               Conread position:
               18-213
               

               Cow position:
               chr1:2976072-2975874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               27, 44
               

               Conread position:
               18-217
               

               Cow position:
               chr1:30189068-30189276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               151
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               27, 108
               

               Conread position:
               18-221
               

               Cow position:
               chr1:56832852-56832652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               63, 143
               

               Conread position:
               18-230
               

               Cow position:
               chr1:61846067-61846280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               27, 44
               

               Conread position:
               18-230
               

               Cow position:
               chr1:85550156-85549943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               27, 200
               

               Conread position:
               18-231
               

               Cow position:
               chr1:5579976-5580193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               30, 126
               

               Conread position:
               18-231
               

               Cow position:
               chr1:50991856-50992072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               27, 33
               

               Conread position:
               18-231
               

               Cow position:
               chr1:63434884-63434669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               27, 187
               

               Conread position:
               18-231
               

               Cow position:
               chr1:77880814-77880597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               170
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               44, 27
               

               Conread position:
               18-231
               

               Cow position:
               chr1:89742074-89741857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               43, 27
               

               Conread position:
               18-231
               

               Cow position:
               chr1:97231880-97232100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               18-231
               

               Cow position:
               chr1:97938891-97939095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               30, 49
               

               Conread position:
               18-234
               

               Cow position:
               chr1:24534332-24534115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               160
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               27, 119
               

               Conread position:
               18-244
               

               Cow position:
               chr1:635763-635533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               18-244
               

               Cow position:
               chr1:31348518-31348284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               18-244
               

               Cow position:
               chr1:54258486-54258720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               44, 16
               

               Conread position:
               18-244
               

               Cow position:
               chr1:91023546-91023315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               159
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               27, 119
               

               Conread position:
               18-280
               

               Cow position:
               chr1:41181767-41182035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               18-283
               

               Cow position:
               chr1:28176931-28177182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               34, 118
               

               Conread position:
               18-283
               

               Cow position:
               chr1:72813536-72813820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               213
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               27, 81
               

               Conread position:
               18-283
               

               Cow position:
               chr1:89448819-89449100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               189
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               18-289
               

               Cow position:
               chr1:13413951-13414230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               44, 78
               

               Conread position:
               18-290
               

               Cow position:
               chr1:46030434-46030155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               27, 53
               

               Conread position:
               18-292
               

               Cow position:
               chr1:79165163-79164871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               205
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               18-293
               

               Cow position:
               chr1:6166164-6166444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               44, 27
               

               Conread position:
               18-293
               

               Cow position:
               chr1:19465978-19466248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               30, 58
               

               Conread position:
               18-294
               

               Cow position:
               chr1:43340690-43340420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               27, 64
               

               Conread position:
               18-297
               

               Cow position:
               chr1:69539619-69539901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               209
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               27, 53
               

               Conread position:
               18-297
               

               Cow position:
               chr1:74084273-74083972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               210
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               27, 127
               

               Conread position:
               18-300
               

               Cow position:
               chr1:10778488-10778775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               205
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               120, 62
               

               Conread position:
               18-301
               

               Cow position:
               chr1:47790744-47790448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               210
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               27, 153
               

               Conread position:
               18-301
               

               Cow position:
               chr1:100551891-100552186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               30, 236
               

               Conread position:
               18-304
               

               Cow position:
               chr1:75250033-75250335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               216
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               30, 103
               

               Conread position:
               18-304
               

               Cow position:
               chr1:78838720-78839010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               27, 16
               

               Conread position:
               18-305
               

               Cow position:
               chr1:65028453-65028741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               194
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               27, 194
               

               Conread position:
               18-307
               

               Cow position:
               chr1:78857400-78857099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               213
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               27, 42
               

               Conread position:
               18-309
               

               Cow position:
               chr1:73960627-73960913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               188
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               27, 63
               

               Conread position:
               19-204
               

               Cow position:
               chr1:81868803-81868619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               115, 27
               

               Conread position:
               19-210
               

               Cow position:
               chr1:24876184-24876379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               26, 73
               

               Conread position:
               19-212
               

               Cow position:
               chr1:81913232-81913036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               26, 121
               

               Conread position:
               19-221
               

               Cow position:
               chr1:48769726-48769930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               26, 59
               

               Conread position:
               19-231
               

               Cow position:
               chr1:8347046-8347261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               19-283
               

               Cow position:
               chr1:93528621-93528896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               201
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               26, 99
               

               Conread position:
               19-286
               

               Cow position:
               chr1:85028875-85029141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               26, 195
               

               Conread position:
               19-290
               

               Cow position:
               chr1:86057144-86056869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               192
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               26, 36
               

               Conread position:
               19-293
               

               Cow position:
               chr1:97954542-97954271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               181
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               26, 39
               

               Conread position:
               19-301
               

               Cow position:
               chr1:15902414-15902696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               191
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               26, 47
               

               Conread position:
               19-302
               

               Cow position:
               chr1:70434920-70435205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               26, 100
               

               Conread position:
               19-306
               

               Cow position:
               chr1:82936669-82936381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               191
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               115, 21
               

               Conread position:
               19-307
               

               Cow position:
               chr1:53622883-53623183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               220
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               62, 51
               

               Conread position:
               19-310
               

               Cow position:
               chr1:1956411-1956109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               26, 127
               

               Conread position:
               20-212
               

               Cow position:
               chr1:6826371-6826180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               32, 119
               

               Conread position:
               20-212
               

               Cow position:
               chr1:41252483-41252291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               25, 113
               

               Conread position:
               20-212
               

               Cow position:
               chr1:74927806-74928003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               147
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               20-218
               

               Cow position:
               chr1:39510131-39509933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               25, 46
               

               Conread position:
               20-219
               

               Cow position:
               chr1:31499546-31499751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               148
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               30, 96
               

               Conread position:
               20-229
               

               Cow position:
               chr1:74822373-74822586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               25, 61
               

               Conread position:
               20-231
               

               Cow position:
               chr1:81580093-81580315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               25, 134
               

               Conread position:
               20-244
               

               Cow position:
               chr1:39681919-39682150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               156
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               28, 52
               

               Conread position:
               20-244
               

               Cow position:
               chr1:93554762-93554988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               25, 61
               

               Conread position:
               20-287
               

               Cow position:
               chr1:23186877-23186595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               204
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               28, 136
               

               Conread position:
               20-287
               

               Cow position:
               chr1:51394339-51394624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               202
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               25, 188
               

               Conread position:
               20-289
               

               Cow position:
               chr1:16855773-16855493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               189
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               25, 60
               

               Conread position:
               20-289
               

               Cow position:
               chr1:26178889-26178600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               193
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               20-289
               

               Cow position:
               chr1:45019884-45019600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               25, 268
               

               Conread position:
               20-289
               

               Cow position:
               chr1:74956097-74955824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               30, 120
               

               Conread position:
               20-290
               

               Cow position:
               chr1:65318500-65318787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               220
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               25, 33
               

               Conread position:
               20-291
               

               Cow position:
               chr1:10942174-10941887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               27, 168
               

               Conread position:
               20-291
               

               Cow position:
               chr1:10964212-10964499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               27, 168
               

               Conread position:
               20-293
               

               Cow position:
               chr1:7739872-7740155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               45, 27
               

               Conread position:
               20-294
               

               Cow position:
               chr1:22823827-22824122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               219
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               51, 153
               

               Conread position:
               20-295
               

               Cow position:
               chr1:25281737-25281463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               25, 201
               

               Conread position:
               20-296
               

               Cow position:
               chr1:8540-8834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               203
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               32, 61
               

               Conread position:
               20-298
               

               Cow position:
               chr1:59518842-59519128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               206
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               25, 121
               

               Conread position:
               20-301
               

               Cow position:
               chr1:68845561-68845285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               196
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               42, 25
               

               Conread position:
               20-301
               

               Cow position:
               chr1:96365587-96365869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               25, 119
               

               Conread position:
               20-302
               

               Cow position:
               chr1:96081404-96081703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               223
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               25, 151
               

               Conread position:
               20-305
               

               Cow position:
               chr1:102753775-102754075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               219
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               7, 270
               

               Conread position:
               20-310
               

               Cow position:
               chr1:3923871-3923575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               117, 25
               

               Conread position:
               20-317
               

               Cow position:
               chr1:11913959-11913644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               21-212
               

               Cow position:
               chr1:56229169-56229358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               139
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               5, 60
               

               Conread position:
               21-234
               

               Cow position:
               chr1:77683282-77683494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               24, 50
               

               Conread position:
               21-305
               

               Cow position:
               chr1:15547399-15547687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               41, 18
               

               Conread position:
               21-308
               

               Cow position:
               chr1:1877954-1878250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               208
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               24, 51
               

               Conread position:
               22-212
               

               Cow position:
               chr1:69264738-69264927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               59, 24
               

               Conread position:
               22-244
               

               Cow position:
               chr1:38418954-38419179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               23, 15
               

               Conread position:
               22-297
               

               Cow position:
               chr1:97717650-97717358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               195
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               57, 157
               

               Conread position:
               25-210
               

               Cow position:
               chr1:77133685-77133869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               20, 57
               

               Conread position:
               25-216
               

               Cow position:
               chr1:59147413-59147222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               141
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               54, 20
               

               Conread position:
               25-229
               

               Cow position:
               chr1:40207192-40206973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               20, 128
               

               Conread position:
               25-272
               

               Cow position:
               chr1:26427934-26427689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               187
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               37, 20
               

               Conread position:
               25-294
               

               Cow position:
               chr1:61391860-61391583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               203
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               20, 108
               

               Conread position:
               25-296
               

               Cow position:
               chr1:186348-186066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               208
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               20, 131
               

               Conread position:
               26-210
               

               Cow position:
               chr1:58036948-58037135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               146
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               19, 122
               

               Conread position:
               26-212
               

               Cow position:
               chr1:98594502-98594684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               148
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               22, 90
               

               Conread position:
               26-213
               

               Cow position:
               chr1:95974325-95974520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               26-229
               

               Cow position:
               chr1:19885311-19885517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               19, 73
               

               Conread position:
               26-231
               

               Cow position:
               chr1:6240349-6240143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               19, 88
               

               Conread position:
               26-295
               

               Cow position:
               chr1:95176865-95177132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               199
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               19, 128
               

               Conread position:
               28-200
               

               Cow position:
               chr1:75141931-75142104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               53, 15
               

               Conread position:
               28-298
               

               Cow position:
               chr1:46143531-46143250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               188
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               17, 191
               

               Conread position:
               29-172
               

               Cow position:
               chr1:74832359-74832500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               111
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               29-212
               

               Cow position:
               chr1:78068132-78067951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               16, 50
               

               Conread position:
               29-231
               

               Cow position:
               chr1:92684759-92684556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               153
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               19, 42
               

               Conread position:
               29-233
               

               Cow position:
               chr1:39069022-39068816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               16, 26
               

               Conread position:
               29-234
               

               Cow position:
               chr1:48730895-48730690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               16, 43
               

               Conread position:
               29-236
               

               Cow position:
               chr1:73936219-73936001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               29-244
               

               Cow position:
               chr1:30983558-30983341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               16, 83
               

               Conread position:
               29-274
               

               Cow position:
               chr1:45223512-45223769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               193
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               29-306
               

               Cow position:
               chr1:52435205-52435503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               202
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               21, 33
               

               Conread position:
               29-317
               

               Cow position:
               chr1:96599348-96599069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               206
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               16, 39
               

               Conread position:
               30-242
               

               Cow position:
               chr1:60986919-60987141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               30-298
               

               Cow position:
               chr1:46218506-46218767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               191
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               15, 91
               

               Conread position:
               30-301
               

               Cow position:
               chr1:500109-500395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               31, 6
               

               Conread position:
               31-212
               

               Cow position:
               chr1:235820-235643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               14, 48
               

               Conread position:
               32-230
               

               Cow position:
               chr1:79844402-79844602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               142
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               13, 59
               

               Conread position:
               32-231
               

               Cow position:
               chr1:98575981-98576183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               163
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               13, 179
               

               Conread position:
               32-237
               

               Cow position:
               chr1:97778930-97779135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               58, 27
               

               Conread position:
               32-244
               

               Cow position:
               chr1:52039568-52039784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               13, 119
               

               Conread position:
               32-244
               

               Cow position:
               chr1:76613199-76612981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               32, 14
               

               Conread position:
               32-244
               

               Cow position:
               chr1:91811717-91811933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               17, 85
               

               Conread position:
               32-287
               

               Cow position:
               chr1:3965775-3966035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               10, 39
               

               Conread position:
               32-295
               

               Cow position:
               chr1:56225723-56225996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               210
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               13, 47
               

               Conread position:
               33-296
               

               Cow position:
               chr1:48618303-48618032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               188
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               12, 29
               

               Conread position:
               34-231
               

               Cow position:
               chr1:53308456-53308258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               11, 123
               

               Conread position:
               35-229
               

               Cow position:
               chr1:88359819-88360016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               10, 46
               

               Conread position:
               35-230
               

               Cow position:
               chr1:8624511-8624311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               151
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               13, 157
               

               Conread position:
               35-230
               

               Cow position:
               chr1:82942225-82942419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               13, 37
               

               Conread position:
               35-230
               

               Cow position:
               chr1:82944333-82944139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               13, 37
               

               Conread position:
               35-237
               

               Cow position:
               chr1:43312090-43311886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               40, 23
               

               Conread position:
               35-290
               

               Cow position:
               chr1:87197754-87198017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               181
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               10, 206
               

               Conread position:
               35-293
               

               Cow position:
               chr1:81228403-81228123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               10, 249
               

               Conread position:
               35-298
               

               Cow position:
               chr1:55429020-55428735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               35-299
               

               Cow position:
               chr1:97611720-97611455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               193
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               26, 11
               

               Conread position:
               35-304
               

               Cow position:
               chr1:18936896-18936613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               206
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               9, 66
               

               Conread position:
               35-305
               

               Cow position:
               chr1:101507296-101507574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               202
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               10, 161
               

               Conread position:
               35-309
               

               Cow position:
               chr1:28563634-28563333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               213
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               10, 112
               

               Conread position:
               35-309
               

               Cow position:
               chr1:29935448-29935161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               200
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               10, 73
               

               Conread position:
               36-216
               

               Cow position:
               chr1:97962582-97962766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               133
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               15, 93
               

               Conread position:
               36-280
               

               Cow position:
               chr1:22035548-22035807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               12, 57
               

               Conread position:
               36-295
               

               Cow position:
               chr1:62235508-62235242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               9, 103
               

               Conread position:
               36-300
               

               Cow position:
               chr1:86688215-86687942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               45, 77
               

               Conread position:
               36-304
               

               Cow position:
               chr1:6394498-6394780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               204
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               9, 26
               

               Conread position:
               37-212
               

               Cow position:
               chr1:11226304-11226129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               8, 130
               

               Conread position:
               37-215
               

               Cow position:
               chr1:66430239-66430413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               101, 42
               

               Conread position:
               37-216
               

               Cow position:
               chr1:39121899-39121714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               37-244
               

               Cow position:
               chr1:21577750-21577960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               145
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               8, 171
               

               Conread position:
               37-244
               

               Cow position:
               chr1:86073536-86073744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               148
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               24, 176
               

               Conread position:
               37-289
               

               Cow position:
               chr1:19515674-19515409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               8, 42
               

               Conread position:
               37-296
               

               Cow position:
               chr1:37726479-37726199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               38-208
               

               Cow position:
               chr1:95215239-95215075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               133
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               7, 32
               

               Conread position:
               38-209
               

               Cow position:
               chr1:30504443-30504617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               12, 31
               

               Conread position:
               38-213
               

               Cow position:
               chr1:46764815-46764995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               143
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               7, 154
               

               Conread position:
               38-295
               

               Cow position:
               chr1:50931035-50930766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               197
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               7, 81
               

               Conread position:
               38-296
               

               Cow position:
               chr1:6854361-6854104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               31, 16
               

               Conread position:
               38-313
               

               Cow position:
               chr1:21560957-21561255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               9, 27
               

               Conread position:
               39-244
               

               Cow position:
               chr1:79660458-79660247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               40-182
               

               Cow position:
               chr1:85596886-85597027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               116
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               36, 77
               

               Conread position:
               40-288
               

               Cow position:
               chr1:42138801-42139046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               34, 172
               

               Conread position:
               40-303
               

               Cow position:
               chr1:53370026-53370305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               201
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               31, 88
               

               Conread position:
               40-306
               

               Cow position:
               chr1:81481440-81481161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               193
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               24, 256
               

               Conread position:
               41-229
               

               Cow position:
               chr1:84768934-84768741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               149
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               43-208
               

               Cow position:
               chr1:37309570-37309404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               38, 28
               

               Conread position:
               44-244
               

               Cow position:
               chr1:60044934-60045138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               36, 88
               

               Conread position:
               46-221
               

               Cow position:
               chr1:16962058-16961882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               35, 15
               

               Conread position:
               46-244
               

               Cow position:
               chr1:6589991-6590188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               92, 30
               

               Conread position:
               46-244
               

               Cow position:
               chr1:57089733-57089527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               29, 138
               

               Conread position:
               48-234
               

               Cow position:
               chr1:84203465-84203652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               14, 133
               

               Conread position:
               48-298
               

               Cow position:
               chr1:83887-84128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               27, 17
               

               Conread position:
               51-244
               

               Cow position:
               chr1:63530516-63530710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               151
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               87, 19
               

               Conread position:
               51-275
               

               Cow position:
               chr1:31357556-31357320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               169
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               11, 132
               

               Conread position:
               51-290
               

               Cow position:
               chr1:81390872-81391131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               14, 122
               

               Conread position:
               52-309
               

               Cow position:
               chr1:42152527-42152261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               15, 7
               

               Conread position:
               54-244
               

               Cow position:
               chr1:75411882-75411685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               54-277
               

               Cow position:
               chr1:81582073-81582291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               162
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               27, 17
               

               Conread position:
               54-288
               

               Cow position:
               chr1:33998715-33998957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               167
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               11, 85
               

               Conread position:
               54-304
               

               Cow position:
               chr1:29474389-29474129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               18, 142
               

               Conread position:
               55-298
               

               Cow position:
               chr1:74751676-74751411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               183
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               57-231
               

               Cow position:
               chr1:28470792-28470968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               80, 21
               

               Conread position:
               57-306
               

               Cow position:
               chr1:102468654-102468399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               185
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               24, 31
               

               Conread position:
               58-244
               

               Cow position:
               chr1:21093078-21093270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               11, 139
               

               Conread position:
               58-297
               

               Cow position:
               chr1:17055957-17056206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               23, 81
               

               Conread position:
               59-231
               

               Cow position:
               chr1:8670736-8670912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               59-288
               

               Cow position:
               chr1:7908000-7908232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               59-290
               

               Cow position:
               chr1:49980678-49980917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               178
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               74, 19
               

               Conread position:
               59-291
               

               Cow position:
               chr1:38278064-38277815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               22, 135
               

               Conread position:
               59-298
               

               Cow position:
               chr1:95835833-95835577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               192
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               59-302
               

               Cow position:
               chr1:89728638-89728410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               232, 18
               

               Conread position:
               61-312
               

               Cow position:
               chr1:26895847-26895580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               61-316
               

               Cow position:
               chr1:18414499-18414255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               72, 98
               

               Conread position:
               62-227
               

               Cow position:
               chr1:71916153-71915984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               133
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               11, 60
               

               Conread position:
               62-231
               

               Cow position:
               chr1:9143690-9143856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               19, 9
               

               Conread position:
               63-212
               

               Cow position:
               chr1:69481978-69481831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               111
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               70, 13
               

               Conread position:
               63-280
               

               Cow position:
               chr1:75382949-75383162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               19, 68
               

               Conread position:
               63-291
               

               Cow position:
               chr1:97144495-97144261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               183
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               86, 72
               

               Conread position:
               64-212
               

               Cow position:
               chr1:99221381-99221237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               64-248
               

               Cow position:
               chr1:65881777-65881961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               73, 93
               

               Conread position:
               65-212
               

               Cow position:
               chr1:81629878-81629731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               16, 138
               

               Conread position:
               65-222
               

               Cow position:
               chr1:45478888-45478734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               66-288
               

               Cow position:
               chr1:38205446-38205658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               69, 153
               

               Conread position:
               68-297
               

               Cow position:
               chr1:87095241-87094996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               13, 224
               

               Conread position:
               69-213
               

               Cow position:
               chr1:21823336-21823482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               69-244
               

               Cow position:
               chr1:52488007-52487827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               8, 117
               

               Conread position:
               70-212
               

               Cow position:
               chr1:43872343-43872201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               107
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               68, 81
               

               Conread position:
               70-212
               

               Cow position:
               chr1:85712416-85712558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               67, 124
               

               Conread position:
               70-229
               

               Cow position:
               chr1:76436456-76436616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               70-244
               

               Cow position:
               chr1:6031600-6031778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               125
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               70-286
               

               Cow position:
               chr1:36688403-36688175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               162
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               11, 120
               

               Conread position:
               70-291
               

               Cow position:
               chr1:3815711-3815471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               170
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               70-295
               

               Cow position:
               chr1:69227466-69227240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               11, 74
               

               Conread position:
               70-301
               

               Cow position:
               chr1:72422432-72422185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               65, 88
               

               Conread position:
               71-197
               

               Cow position:
               chr1:77265415-77265537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               101
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               71-212
               

               Cow position:
               chr1:36875006-36875145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               108
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               10, 57
               

               Conread position:
               71-212
               

               Cow position:
               chr1:81809161-81809020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               67, 47
               

               Conread position:
               71-212
               

               Cow position:
               chr1:86340488-86340349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               10, 60
               

               Conread position:
               71-244
               

               Cow position:
               chr1:2971892-2972071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               132
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               71-288
               

               Cow position:
               chr1:22192746-22192977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               71-289
               

               Cow position:
               chr1:45925017-45925230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               9, 24
               

               Conread position:
               71-290
               

               Cow position:
               chr1:5637083-5636863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               10, 141
               

               Conread position:
               71-291
               

               Cow position:
               chr1:73721337-73721574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               62, 130
               

               Conread position:
               71-291
               

               Cow position:
               chr1:102648255-102648490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               71-295
               

               Cow position:
               chr1:67919111-67919342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               10, 133
               

               Conread position:
               71-296
               

               Cow position:
               chr1:528095-527867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               19, 34
               

               Conread position:
               71-296
               

               Cow position:
               chr1:6731157-6731394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               10, 24
               

               Conread position:
               71-297
               

               Cow position:
               chr1:67529031-67529272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               176
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               71-311
               

               Cow position:
               chr1:96304993-96304744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               14, 8
               

               Conread position:
               71-312
               

               Cow position:
               chr1:7752356-7752613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               71-315
               

               Cow position:
               chr1:5006138-5006380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               10, 78
               

               Conread position:
               72-205
               

               Cow position:
               chr1:54732506-54732375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               104
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               61, 8
               

               Conread position:
               72-230
               

               Cow position:
               chr1:86578942-86579098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               9, 64
               

               Conread position:
               72-231
               

               Cow position:
               chr1:101177493-101177653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               72-247
               

               Cow position:
               chr1:98413749-98413924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               9, 169
               

               Conread position:
               72-274
               

               Cow position:
               chr1:11729153-11729365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               72-277
               

               Cow position:
               chr1:47402505-47402701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               157
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               10, 106
               

               Conread position:
               72-292
               

               Cow position:
               chr1:66752651-66752421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               72-298
               

               Cow position:
               chr1:6760057-6759828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               9, 26
               

               Conread position:
               72-301
               

               Cow position:
               chr1:42887299-42887060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               72-304
               

               Cow position:
               chr1:38706877-38706630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               72-304
               

               Cow position:
               chr1:55229953-55230197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               72-304
               

               Cow position:
               chr1:84104084-84103834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               73-228
               

               Cow position:
               chr1:54157272-54157431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               126
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               73-231
               

               Cow position:
               chr1:98897716-98897557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               8, 137
               

               Conread position:
               73-274
               

               Cow position:
               chr1:99071108-99071305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               148
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               8, 128
               

               Conread position:
               73-283
               

               Cow position:
               chr1:2462363-2462573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               141, 7
               

               Conread position:
               73-288
               

               Cow position:
               chr1:242537-242759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               65, 7
               

               Conread position:
               73-292
               

               Cow position:
               chr1:46245770-46245524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               62, 111
               

               Conread position:
               73-293
               

               Cow position:
               chr1:52496750-52496981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               8, 30
               

               Conread position:
               73-297
               

               Cow position:
               chr1:8287651-8287414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               66, 117
               

               Conread position:
               74-287
               

               Cow position:
               chr1:88338646-88338856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               147
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               7, 117
               

               Conread position:
               74-308
               

               Cow position:
               chr1:95156987-95156737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               75-269
               

               Cow position:
               chr1:69940842-69940636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               75-298
               

               Cow position:
               chr1:76735497-76735262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               140, 63
               

               Conread position:
               75-305
               

               Cow position:
               chr1:23969071-23968840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               166
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               161, 19
               

               Conread position:
               76-208
               

               Cow position:
               chr1:24561527-24561394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               103
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               76-208
               

               Cow position:
               chr1:24570965-24570832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               107
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               77-301
               

               Cow position:
               chr1:77739705-77739944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               60, 117
               

               Conread position:
               80-212
               

               Cow position:
               chr1:42360272-42360407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               105
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               80-212
               

               Cow position:
               chr1:43148562-43148426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               104
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               80-222
               

               Cow position:
               chr1:65638901-65639039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               58, 14
               

               Conread position:
               80-230
               

               Cow position:
               chr1:56711613-56711466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               115
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               80-231
               

               Cow position:
               chr1:45874092-45873932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               80-231
               

               Cow position:
               chr1:67918743-67918895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               80-232
               

               Cow position:
               chr1:17317370-17317220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               114
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               28, 57
               

               Conread position:
               80-240
               

               Cow position:
               chr1:3914932-3914772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               58, 50
               

               Conread position:
               80-242
               

               Cow position:
               chr1:73719447-73719612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               122
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               80-243
               

               Cow position:
               chr1:101268015-101267851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               122
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               131, 32
               

               Conread position:
               80-275
               

               Cow position:
               chr1:63078996-63079195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               57, 65
               

               Conread position:
               80-275
               

               Cow position:
               chr1:95618628-95618835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               80-276
               

               Cow position:
               chr1:61011167-61011370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               58, 169
               

               Conread position:
               80-285
               

               Cow position:
               chr1:51860575-51860360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               80-285
               

               Cow position:
               chr1:81858916-81858697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               80-287
               

               Cow position:
               chr1:68127204-68126984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               80-287
               

               Cow position:
               chr1:90267707-90267930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               59, 29
               

               Conread position:
               80-296
               

               Cow position:
               chr1:74081995-74081786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               162
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               57, 136
               

               Conread position:
               80-297
               

               Cow position:
               chr1:92075475-92075696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               55, 87
               

               Conread position:
               80-298
               

               Cow position:
               chr1:852156-852391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               80-298
               

               Cow position:
               chr1:99570501-99570281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               34, 51
               

               Conread position:
               80-301
               

               Cow position:
               chr1:73020676-73020441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               80-304
               

               Cow position:
               chr1:49334406-49334168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               58, 42
               

               Conread position:
               80-307
               

               Cow position:
               chr1:16061018-16060782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               81-222
               

               Cow position:
               chr1:98683861-98684002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               109
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               52, 67
               

               Conread position:
               81-230
               

               Cow position:
               chr1:80336262-80336113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               117
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               57, 137
               

               Conread position:
               81-277
               

               Cow position:
               chr1:6381759-6381972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               57, 94
               

               Conread position:
               81-277
               

               Cow position:
               chr1:95229344-95229153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               54, 141
               

               Conread position:
               81-278
               

               Cow position:
               chr1:10674138-10674345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               149
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               59, 113
               

               Conread position:
               81-283
               

               Cow position:
               chr1:83606463-83606254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               81-288
               

               Cow position:
               chr1:96558863-96558639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               82-248
               

               Cow position:
               chr1:98636693-98636857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               51, 108
               

               Conread position:
               82-288
               

               Cow position:
               chr1:102768168-102768382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               9, 57
               

               Conread position:
               82-313
               

               Cow position:
               chr1:4582538-4582782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               8, 62
               

               Conread position:
               83-231
               

               Cow position:
               chr1:19304561-19304710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               55, 71
               

               Conread position:
               83-238
               

               Cow position:
               chr1:64019532-64019376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               123
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               84-212
               

               Cow position:
               chr1:83301962-83301831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               107
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               84-232
               

               Cow position:
               chr1:22461248-22461099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               84-307
               

               Cow position:
               chr1:95152861-95153101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               85-291
               

               Cow position:
               chr1:7793530-7793323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               145, 124
               

               Conread position:
               86-212
               

               Cow position:
               chr1:42178737-42178864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               99
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               86-292
               

               Cow position:
               chr1:76739917-76739703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               153
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               52, 11
               

               Conread position:
               86-296
               

               Cow position:
               chr1:101280742-101280523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               160
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               147, 50
               

               Conread position:
               87-231
               

               Cow position:
               chr1:92603011-92603159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               114
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               87-280
               

               Cow position:
               chr1:85339386-85339576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               143, 18
               

               Conread position:
               87-287
               

               Cow position:
               chr1:81290500-81290710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               148
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               56, 51
               

               Conread position:
               88-231
               

               Cow position:
               chr1:69445323-69445472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               115
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               88-288
               

               Cow position:
               chr1:95516033-95516230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               143
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               50, 127
               

               Conread position:
               89-244
               

               Cow position:
               chr1:73551515-73551351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               125
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               89-294
               

               Cow position:
               chr1:9637024-9637243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               92-298
               

               Cow position:
               chr1:76518420-76518633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               93-297
               

               Cow position:
               chr1:43499297-43499094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               45, 109
               

               Conread position:
               94-296
               

               Cow position:
               chr1:56913529-56913317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               152
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               43, 104
               

               Conread position:
               95-212
               

               Cow position:
               chr1:81364261-81364379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               94
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               95-290
               

               Cow position:
               chr1:32014199-32014401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               43, 17
               

               Conread position:
               98-283
               

               Cow position:
               chr1:95049860-95049663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               130, 34
               

               Conread position:
               99-242
               

               Cow position:
               chr1:31630282-31630134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               114
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               99-300
               

               Cow position:
               chr1:87149810-87149597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               100-211
               

               Cow position:
               chr1:45673762-45673872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               113
               

               Alignm identity:
               91
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               38, 12
               

               Conread position:
               100-257
               

               Cow position:
               chr1:67539564-67539726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               100-274
               

               Cow position:
               chr1:78793997-78793810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               100-301
               

               Cow position:
               chr1:64706499-64706688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               38, 67
               

               Conread position:
               100-304
               

               Cow position:
               chr1:100812285-100812088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               149
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               91, 38
               

               Conread position:
               100-308
               

               Cow position:
               chr1:52450777-52450989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               101-286
               

               Cow position:
               chr1:34001054-34001248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               137
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               101-294
               

               Cow position:
               chr1:13685093-13684892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               37, 93
               

               Conread position:
               101-304
               

               Cow position:
               chr1:63994548-63994331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               166
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               43, 82
               

               Conread position:
               102-278
               

               Cow position:
               chr1:69411690-69411498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               142
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               103-230
               

               Cow position:
               chr1:46100831-46100703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               101
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               103-244
               

               Cow position:
               chr1:79409460-79409602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               35, 131
               

               Conread position:
               103-257
               

               Cow position:
               chr1:81179339-81179182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               35, 128
               

               Conread position:
               103-288
               

               Cow position:
               chr1:46172614-46172812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               103-298
               

               Cow position:
               chr1:39684136-39683925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               157
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               5, 77
               

               Conread position:
               103-301
               

               Cow position:
               chr1:89298101-89297886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               35, 67
               

               Conread position:
               103-301
               

               Cow position:
               chr1:89301710-89301495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               35, 67
               

               Conread position:
               103-304
               

               Cow position:
               chr1:98557110-98556895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               104-308
               

               Cow position:
               chr1:25022065-25021852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               34, 206
               

               Conread position:
               104-309
               

               Cow position:
               chr1:81638558-81638758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               152
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               34, 111
               

               Conread position:
               105-239
               

               Cow position:
               chr1:12989290-12989427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               104
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               105-292
               

               Cow position:
               chr1:64960420-64960235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               134
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               147, 30
               

               Conread position:
               106-298
               

               Cow position:
               chr1:15875672-15875877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               111-301
               

               Cow position:
               chr1:84787288-84787480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               28, 10
               

               Conread position:
               115-293
               

               Cow position:
               chr1:92187978-92188171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               144
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               117-244
               

               Cow position:
               chr1:23372882-23373012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               102
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               117-244
               

               Cow position:
               chr1:63905236-63905113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               105
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               21, 99
               

               Conread position:
               117-289
               

               Cow position:
               chr1:32035687-32035506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               21, 115
               

               Conread position:
               117-293
               

               Cow position:
               chr1:79663415-79663241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               21, 100
               

               Conread position:
               117-296
               

               Cow position:
               chr1:91796204-91796026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               21, 10
               

               Conread position:
               120-287
               

               Cow position:
               chr1:83926413-83926574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               18, 103
               

               Conread position:
               120-289
               

               Cow position:
               chr1:70044381-70044552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               128
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               9, 19
               

               Conread position:
               121-231
               

               Cow position:
               chr1:99024204-99024093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               112
               

               Alignm identity:
               89
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               121-293
               

               Cow position:
               chr1:100800742-100800557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               137
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               121-307
               

               Cow position:
               chr1:70416733-70416533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               17, 97
               

               Conread position:
               122-296
               

               Cow position:
               chr1:22828542-22828357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               123-299
               

               Cow position:
               chr1:87934243-87934063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               5, 87
               

               Conread position:
               124-291
               

               Cow position:
               chr1:96043648-96043812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               131
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               13, 93
               

               Conread position:
               127-228
               

               Cow position:
               chr1:42404168-42404270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               103
               

               Alignm identity:
               85
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               128-300
               

               Cow position:
               chr1:75227285-75227105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               130
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               130-290
               

               Cow position:
               chr1:41022455-41022626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               131-281
               

               Cow position:
               chr1:96362389-96362238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               12, 128
               

               Conread position:
               136-291
               

               Cow position:
               chr1:40284596-40284438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               120
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               96, 70
               

               Conread position:
               136-294
               

               Cow position:
               chr1:74010955-74011102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               136-303
               

               Cow position:
               chr1:50843809-50843635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               72, 147
               

               Conread position:
               143-292
               

               Cow position:
               chr1:54645477-54645634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               122
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               155-288
               

               Cow position:
               chr1:54294453-54294314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               110
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               159-293
               

               Cow position:
               chr1:43377917-43378049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               104
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               56, 0
               
Show alignments to all cow chromosomes.
Conread position:	3-234
Cow position:	chr1:68676268-68676503 (view UCSC Genome Browser custom track)
Alignm length:	238
Alignm identity:	171
Alignm E-value:	7e-34
Alignm gaps (pig, cow):	42, 110
Conread position:	4-212
Cow position:	chr1:65103527-65103734 (view UCSC Genome Browser custom track)
Alignm length:	213
Alignm identity:	152
Alignm E-value:	4e-27
Alignm gaps (pig, cow):	58, 164
Conread position:	6-200
Cow position:	chr1:81355799-81355596 (view UCSC Genome Browser custom track)
Alignm length:	204
Alignm identity:	146
Alignm E-value:	9e-25
Alignm gaps (pig, cow):	42, 0
Conread position:	6-275
Cow position:	chr1:47886576-47886286 (view UCSC Genome Browser custom track)
Alignm length:	293
Alignm identity:	206
Alignm E-value:	1e-28
Alignm gaps (pig, cow):	39, 127
Conread position:	6-289
Cow position:	chr1:52467211-52467493 (view UCSC Genome Browser custom track)
Alignm length:	291
Alignm identity:	189
Alignm E-value:	6e-21
Alignm gaps (pig, cow):	39, 134
Conread position:	6-298
Cow position:	chr1:44506878-44507185 (view UCSC Genome Browser custom track)
Alignm length:	308
Alignm identity:	216
Alignm E-value:	1e-38
Alignm gaps (pig, cow):	39, 0
Conread position:	6-319
Cow position:	chr1:30066527-30066841 (view UCSC Genome Browser custom track)
Alignm length:	322
Alignm identity:	209
Alignm E-value:	3e-24
Alignm gaps (pig, cow):	42, 119
Conread position:	7-201
Cow position:	chr1:92433911-92434108 (view UCSC Genome Browser custom track)
Alignm length:	200
Alignm identity:	141
Alignm E-value:	7e-23
Alignm gaps (pig, cow):	41, 93
Conread position:	7-212
Cow position:	chr1:57420816-57420617 (view UCSC Genome Browser custom track)
Alignm length:	208
Alignm identity:	147
Alignm E-value:	8e-24
Alignm gaps (pig, cow):	41, 64
Conread position:	7-228
Cow position:	chr1:26895065-26894835 (view UCSC Genome Browser custom track)
Alignm length:	233
Alignm identity:	163
Alignm E-value:	9e-26
Alignm gaps (pig, cow):	38, 27
Conread position:	7-231
Cow position:	chr1:65909438-65909648 (view UCSC Genome Browser custom track)
Alignm length:	227
Alignm identity:	165
Alignm E-value:	1e-27
Alignm gaps (pig, cow):	38, 64
Conread position:	7-233
Cow position:	chr1:100569065-100569296 (view UCSC Genome Browser custom track)
Alignm length:	232
Alignm identity:	160
Alignm E-value:	1e-27
Alignm gaps (pig, cow):	41, 0
Conread position:	7-244
Cow position:	chr1:33409714-33409472 (view UCSC Genome Browser custom track)
Alignm length:	243
Alignm identity:	167
Alignm E-value:	4e-29
Alignm gaps (pig, cow):	40, 0
Conread position:	7-291
Cow position:	chr1:78066629-78066333 (view UCSC Genome Browser custom track)
Alignm length:	297
Alignm identity:	193
Alignm E-value:	7e-23
Alignm gaps (pig, cow):	21, 0
Conread position:	7-301
Cow position:	chr1:63390860-63390545 (view UCSC Genome Browser custom track)
Alignm length:	317
Alignm identity:	210
Alignm E-value:	2e-23
Alignm gaps (pig, cow):	38, 292
Conread position:	8-228
Cow position:	chr1:84255676-84255902 (view UCSC Genome Browser custom track)
Alignm length:	228
Alignm identity:	155
Alignm E-value:	2e-23
Alignm gaps (pig, cow):	37, 5
Conread position:	9-216
Cow position:	chr1:30441869-30442079 (view UCSC Genome Browser custom track)
Alignm length:	211
Alignm identity:	141
Alignm E-value:	2e-21
Alignm gaps (pig, cow):	51, 0
Conread position:	9-294
Cow position:	chr1:78791393-78791114 (view UCSC Genome Browser custom track)
Alignm length:	291
Alignm identity:	191
Alignm E-value:	6e-21
Alignm gaps (pig, cow):	36, 165
Conread position:	9-296
Cow position:	chr1:93110708-93110417 (view UCSC Genome Browser custom track)
Alignm length:	299
Alignm identity:	206
Alignm E-value:	4e-28
Alignm gaps (pig, cow):	36, 88
Conread position:	9-304
Cow position:	chr1:66355803-66355510 (view UCSC Genome Browser custom track)
Alignm length:	302
Alignm identity:	197
Alignm E-value:	2e-21
Alignm gaps (pig, cow):	34, 123