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Cow genome map

           
Conread name:
           
rcbl0_009068.y1
        

               
Conread position:
               
3-298
               

               
Cow position:
               
chr11:50937866-50937563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
23, 107
               

               
Conread position:
               
6-212
               

               
Cow position:
               
chr11:3233971-3234171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
132, 26
               

               
Conread position:
               
7-231
               

               
Cow position:
               
chr11:72375799-72375561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
7-231
               

               
Cow position:
               
chr11:77750885-77750656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 89
               

               
Conread position:
               
7-244
               

               
Cow position:
               
chr11:77705642-77705879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
41, 129
               

               
Conread position:
               
7-254
               

               
Cow position:
               
chr11:48672600-48672854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
38, 109
               

               
Conread position:
               
7-288
               

               
Cow position:
               
chr11:27907680-27907955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
38, 62
               

               
Conread position:
               
7-289
               

               
Cow position:
               
chr11:49148926-49149233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
7-298
               

               
Cow position:
               
chr11:30934311-30934587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
41, 51
               

               
Conread position:
               
7-301
               

               
Cow position:
               
chr11:7874034-7874338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
133, 39
               

               
Conread position:
               
7-301
               

               
Cow position:
               
chr11:33348297-33348000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 64
               

               
Conread position:
               
7-313
               

               
Cow position:
               
chr11:58588234-58588538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
38, 29
               

               
Conread position:
               
7-317
               

               
Cow position:
               
chr11:7460728-7460417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
38, 263
               

               
Conread position:
               
9-300
               

               
Cow position:
               
chr11:11752629-11752338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
36, 181
               

               
Conread position:
               
10-274
               

               
Cow position:
               
chr11:71009028-71009278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
65, 35
               

               
Conread position:
               
10-290
               

               
Cow position:
               
chr11:68905185-68904901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
35, 71
               

               
Conread position:
               
10-298
               

               
Cow position:
               
chr11:64044131-64044412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
35, 59
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr11:75874862-75874571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
65, 35
               

               
Conread position:
               
11-222
               

               
Cow position:
               
chr11:71807680-71807459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
29, 108
               

               
Conread position:
               
11-231
               

               
Cow position:
               
chr11:80530259-80530473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
34, 117
               

               
Conread position:
               
11-237
               

               
Cow position:
               
chr11:56654440-56654679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
11-274
               

               
Cow position:
               
chr11:73354163-73353896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
34, 67
               

               
Conread position:
               
11-289
               

               
Cow position:
               
chr11:63434165-63433879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
34, 60
               

               
Conread position:
               
11-290
               

               
Cow position:
               
chr11:43360892-43360600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
34, 113
               

               
Conread position:
               
11-292
               

               
Cow position:
               
chr11:66041163-66041462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
11-297
               

               
Cow position:
               
chr11:70600928-70600633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
34, 60
               

               
Conread position:
               
11-302
               

               
Cow position:
               
chr11:79728778-79728473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
13-228
               

               
Cow position:
               
chr11:47004235-47004457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
36, 7
               

               
Conread position:
               
13-230
               

               
Cow position:
               
chr11:27765044-27765268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 7
               

               
Conread position:
               
13-231
               

               
Cow position:
               
chr11:69075801-69076025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
32, 108
               

               
Conread position:
               
14-244
               

               
Cow position:
               
chr11:50472211-50472447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 98
               

               
Conread position:
               
15-221
               

               
Cow position:
               
chr11:22499468-22499261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
33, 5
               

               
Conread position:
               
15-305
               

               
Cow position:
               
chr11:45742272-45742572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
7, 124
               

               
Conread position:
               
16-230
               

               
Cow position:
               
chr11:28643980-28644201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
16-244
               

               
Cow position:
               
chr11:62742738-62742519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
16-280
               

               
Cow position:
               
chr11:19247300-19247028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
45, 34
               

               
Conread position:
               
16-291
               

               
Cow position:
               
chr11:67600678-67600966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
16-298
               

               
Cow position:
               
chr11:35347857-35347556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
29, 180
               

               
Conread position:
               
16-298
               

               
Cow position:
               
chr11:76369625-76369335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
29, 37
               

               
Conread position:
               
16-301
               

               
Cow position:
               
chr11:26067287-26066991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
29, 195
               

               
Conread position:
               
17-145
               

               
Cow position:
               
chr11:81174787-81174913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
28, 61
               

               
Conread position:
               
17-148
               

               
Cow position:
               
chr11:21428096-21427961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
17-172
               

               
Cow position:
               
chr11:18341144-18340985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
28, 102
               

               
Conread position:
               
17-181
               

               
Cow position:
               
chr11:61859006-61858838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
17-183
               

               
Cow position:
               
chr11:40258511-40258345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
28, 104
               

               
Conread position:
               
17-183
               

               
Cow position:
               
chr11:41176053-41175882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
17-183
               

               
Cow position:
               
chr11:70273202-70273373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
17-191
               

               
Cow position:
               
chr11:16262131-16261950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
17-197
               

               
Cow position:
               
chr11:75965753-75965571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
28, 64
               

               
Conread position:
               
17-203
               

               
Cow position:
               
chr11:45898156-45897962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
17-204
               

               
Cow position:
               
chr11:21438112-21438296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
28, 59
               

               
Conread position:
               
17-204
               

               
Cow position:
               
chr11:33341250-33341057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
17-205
               

               
Cow position:
               
chr11:64638632-64638437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
17-206
               

               
Cow position:
               
chr11:49934840-49934641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
17-210
               

               
Cow position:
               
chr11:36799405-36799214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
28, 54
               

               
Conread position:
               
17-212
               

               
Cow position:
               
chr11:8988332-8988136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
18, 66
               

               
Conread position:
               
17-212
               

               
Cow position:
               
chr11:40792811-40792609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
17-212
               

               
Cow position:
               
chr11:62155523-62155734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
17-212
               

               
Cow position:
               
chr11:64868118-64867925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
31, 49
               

               
Conread position:
               
17-213
               

               
Cow position:
               
chr11:377747-377545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
17-213
               

               
Cow position:
               
chr11:1157542-1157740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 55
               

               
Conread position:
               
17-213
               

               
Cow position:
               
chr11:82940725-82940529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
28, 84
               

               
Conread position:
               
17-214
               

               
Cow position:
               
chr11:5031877-5031678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
17-214
               

               
Cow position:
               
chr11:71501235-71501035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
28, 189
               

               
Conread position:
               
17-215
               

               
Cow position:
               
chr11:1362579-1362369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
17-217
               

               
Cow position:
               
chr11:8545116-8544917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
28, 79
               

               
Conread position:
               
17-217
               

               
Cow position:
               
chr11:67246689-67246886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
28, 78
               

               
Conread position:
               
17-222
               

               
Cow position:
               
chr11:33310869-33311085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
17-225
               

               
Cow position:
               
chr11:76114551-76114751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
121, 30
               

               
Conread position:
               
17-226
               

               
Cow position:
               
chr11:63482529-63482321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
28, 116
               

               
Conread position:
               
17-228
               

               
Cow position:
               
chr11:23586534-23586750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
61, 29
               

               
Conread position:
               
17-228
               

               
Cow position:
               
chr11:40478953-40478741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
28, 64
               

               
Conread position:
               
17-228
               

               
Cow position:
               
chr11:66572604-66572386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
28, 97
               

               
Conread position:
               
17-229
               

               
Cow position:
               
chr11:11125559-11125775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
28, 190
               

               
Conread position:
               
17-229
               

               
Cow position:
               
chr11:40573436-40573223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
35, 115
               

               
Conread position:
               
17-229
               

               
Cow position:
               
chr11:70086225-70086445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
28, 154
               

               
Conread position:
               
17-231
               

               
Cow position:
               
chr11:16907147-16906936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
31, 53
               

               
Conread position:
               
17-231
               

               
Cow position:
               
chr11:17831324-17831106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
32, 49
               

               
Conread position:
               
17-231
               

               
Cow position:
               
chr11:34032305-34032084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
28, 132
               

               
Conread position:
               
17-231
               

               
Cow position:
               
chr11:34145018-34144810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
31, 104
               

               
Conread position:
               
17-231
               

               
Cow position:
               
chr11:36238680-36238895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
28, 61
               

               
Conread position:
               
17-231
               

               
Cow position:
               
chr11:48649878-48650087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
28, 35
               

               
Conread position:
               
17-231
               

               
Cow position:
               
chr11:54334230-54334443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
28, 62
               

               
Conread position:
               
17-231
               

               
Cow position:
               
chr11:61958848-61958630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
28, 38
               

               
Conread position:
               
17-231
               

               
Cow position:
               
chr11:63847745-63847959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
28, 65
               

               
Conread position:
               
17-233
               

               
Cow position:
               
chr11:23138162-23137940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
28, 38
               

               
Conread position:
               
17-234
               

               
Cow position:
               
chr11:33754006-33753794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
64, 101
               

               
Conread position:
               
17-234
               

               
Cow position:
               
chr11:69307403-69307631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
17-236
               

               
Cow position:
               
chr11:33345340-33345566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
17-236
               

               
Cow position:
               
chr11:71868707-71868481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
33, 165
               

               
Conread position:
               
17-237
               

               
Cow position:
               
chr11:59024457-59024240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 43
               

               
Conread position:
               
17-239
               

               
Cow position:
               
chr11:6202343-6202568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
28, 64
               

               
Conread position:
               
17-243
               

               
Cow position:
               
chr11:23232619-23232393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
28, 146
               

               
Conread position:
               
17-243
               

               
Cow position:
               
chr11:65826845-65826623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 54
               

               
Conread position:
               
17-243
               

               
Cow position:
               
chr11:84228815-84228595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
28, 9
               

               
Conread position:
               
17-244
               

               
Cow position:
               
chr11:18509120-18508900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
28, 54
               

               
Conread position:
               
17-244
               

               
Cow position:
               
chr11:30192071-30192310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
17-244
               

               
Cow position:
               
chr11:50152919-50152684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
17-244
               

               
Cow position:
               
chr11:59872828-59873052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
31, 115
               

               
Conread position:
               
17-244
               

               
Cow position:
               
chr11:63435414-63435651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
17-244
               

               
Cow position:
               
chr11:77319309-77319541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 221
               

               
Conread position:
               
17-244
               

               
Cow position:
               
chr11:84385739-84385508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
28, 105
               

               
Conread position:
               
17-245
               

               
Cow position:
               
chr11:23407358-23407590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 220
               

               
Conread position:
               
17-247
               

               
Cow position:
               
chr11:9221831-9221599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
28, 96
               

               
Conread position:
               
17-250
               

               
Cow position:
               
chr11:21894255-21894029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 28
               

               
Conread position:
               
17-274
               

               
Cow position:
               
chr11:42296721-42296456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
17-280
               

               
Cow position:
               
chr11:67804649-67804914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
17, 55
               

               
Conread position:
               
17-285
               

               
Cow position:
               
chr11:42836062-42835771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
64, 39
               

               
Conread position:
               
17-286
               

               
Cow position:
               
chr11:78381158-78380886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
9, 29
               

               
Conread position:
               
17-287
               

               
Cow position:
               
chr11:6245219-6245505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
28, 53
               

               
Conread position:
               
17-287
               

               
Cow position:
               
chr11:68913039-68913327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
17-288
               

               
Cow position:
               
chr11:18698774-18699055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
28, 231
               

               
Conread position:
               
17-288
               

               
Cow position:
               
chr11:38639016-38639284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
121, 34
               

               
Conread position:
               
17-289
               

               
Cow position:
               
chr11:18572698-18572969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
28, 104
               

               
Conread position:
               
17-289
               

               
Cow position:
               
chr11:29659459-29659746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
28, 45
               

               
Conread position:
               
17-289
               

               
Cow position:
               
chr11:36286593-36286890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
28, 283
               

               
Conread position:
               
17-290
               

               
Cow position:
               
chr11:34962961-34963238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
28, 132
               

               
Conread position:
               
17-290
               

               
Cow position:
               
chr11:53778512-53778807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
17-290
               

               
Cow position:
               
chr11:70206219-70206502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
31, 7
               

               
Conread position:
               
17-291
               

               
Cow position:
               
chr11:16540758-16541043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
17-291
               

               
Cow position:
               
chr11:21844236-21843951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
58, 28
               

               
Conread position:
               
17-291
               

               
Cow position:
               
chr11:32693574-32693306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
219, 18
               

               
Conread position:
               
17-293
               

               
Cow position:
               
chr11:9270829-9270548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 175
               

               
Conread position:
               
17-294
               

               
Cow position:
               
chr11:31506741-31507019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
28, 207
               

               
Conread position:
               
17-294
               

               
Cow position:
               
chr11:49152848-49153131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 228
               

               
Conread position:
               
17-295
               

               
Cow position:
               
chr11:45631865-45631588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
28, 103
               

               
Conread position:
               
17-296
               

               
Cow position:
               
chr11:4663149-4662870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
33, 181
               

               
Conread position:
               
17-296
               

               
Cow position:
               
chr11:65607794-65607497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
17-297
               

               
Cow position:
               
chr11:14470267-14470555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
45, 28
               

               
Conread position:
               
17-297
               

               
Cow position:
               
chr11:26144199-26143904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
45, 65
               

               
Conread position:
               
17-297
               

               
Cow position:
               
chr11:34646488-34646789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
56, 21
               

               
Conread position:
               
17-298
               

               
Cow position:
               
chr11:38334423-38334716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
64, 29
               

               
Conread position:
               
17-298
               

               
Cow position:
               
chr11:43646514-43646235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
44, 76
               

               
Conread position:
               
17-298
               

               
Cow position:
               
chr11:49057299-49057578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
28, 104
               

               
Conread position:
               
17-298
               

               
Cow position:
               
chr11:66188426-66188126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
28, 186
               

               
Conread position:
               
17-300
               

               
Cow position:
               
chr11:71492958-71492667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
17-301
               

               
Cow position:
               
chr11:19592094-19591798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
28, 96
               

               
Conread position:
               
17-301
               

               
Cow position:
               
chr11:32254321-32254018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
17-301
               

               
Cow position:
               
chr11:44636861-44636582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
28, 197
               

               
Conread position:
               
17-301
               

               
Cow position:
               
chr11:52690625-52690326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
28, 128
               

               
Conread position:
               
17-304
               

               
Cow position:
               
chr11:372798-372513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
28, 17
               

               
Conread position:
               
17-304
               

               
Cow position:
               
chr11:13940088-13940388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
7, 50
               

               
Conread position:
               
17-304
               

               
Cow position:
               
chr11:17278767-17278482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
28, 17
               

               
Conread position:
               
17-304
               

               
Cow position:
               
chr11:30830719-30830420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
28, 207
               

               
Conread position:
               
17-304
               

               
Cow position:
               
chr11:55333808-55334120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
31, 55
               

               
Conread position:
               
17-304
               

               
Cow position:
               
chr11:71806247-71805963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
28, 55
               

               
Conread position:
               
17-304
               

               
Cow position:
               
chr11:83925947-83926233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
38, 96
               

               
Conread position:
               
17-305
               

               
Cow position:
               
chr11:15772818-15772509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
28, 115
               

               
Conread position:
               
17-305
               

               
Cow position:
               
chr11:55494576-55494866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
46, 23
               

               
Conread position:
               
17-305
               

               
Cow position:
               
chr11:70756378-70756679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
58, 102
               

               
Conread position:
               
17-308
               

               
Cow position:
               
chr11:2084038-2084350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
17-309
               

               
Cow position:
               
chr11:27746821-27747124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
17-310
               

               
Cow position:
               
chr11:83397802-83398112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
28, 287
               

               
Conread position:
               
17-312
               

               
Cow position:
               
chr11:45282826-45283135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
55, 22
               

               
Conread position:
               
17-313
               

               
Cow position:
               
chr11:16314769-16315085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
18-176
               

               
Cow position:
               
chr11:38874505-38874342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
18-181
               

               
Cow position:
               
chr11:18588688-18588523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 160
               

               
Conread position:
               
18-212
               

               
Cow position:
               
chr11:46998882-46999074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 48
               

               
Conread position:
               
18-212
               

               
Cow position:
               
chr11:83033339-83033144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
30, 124
               

               
Conread position:
               
18-221
               

               
Cow position:
               
chr11:80761481-80761273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
18-227
               

               
Cow position:
               
chr11:36658923-36658713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
27, 117
               

               
Conread position:
               
18-229
               

               
Cow position:
               
chr11:39118650-39118870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
18-230
               

               
Cow position:
               
chr11:14466591-14466374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
27, 205
               

               
Conread position:
               
18-231
               

               
Cow position:
               
chr11:35573591-35573377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 111
               

               
Conread position:
               
18-244
               

               
Cow position:
               
chr11:46747966-46747730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
59, 225
               

               
Conread position:
               
18-280
               

               
Cow position:
               
chr11:21852406-21852139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
27, 7
               

               
Conread position:
               
18-280
               

               
Cow position:
               
chr11:33414135-33414403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
30, 42
               

               
Conread position:
               
18-286
               

               
Cow position:
               
chr11:41215640-41215916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
27, 63
               

               
Conread position:
               
18-287
               

               
Cow position:
               
chr11:13592634-13592923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
18-290
               

               
Cow position:
               
chr11:63920151-63919879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
27, 37
               

               
Conread position:
               
18-290
               

               
Cow position:
               
chr11:80413114-80412822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
96, 112
               

               
Conread position:
               
18-292
               

               
Cow position:
               
chr11:65495428-65495155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
27, 60
               

               
Conread position:
               
18-292
               

               
Cow position:
               
chr11:67871707-67871434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
44, 100
               

               
Conread position:
               
18-293
               

               
Cow position:
               
chr11:41272033-41272308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
26, 97
               

               
Conread position:
               
18-295
               

               
Cow position:
               
chr11:10095243-10095535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
18-296
               

               
Cow position:
               
chr11:12111557-12111283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
8, 125
               

               
Conread position:
               
18-307
               

               
Cow position:
               
chr11:42016735-42016433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
27, 85
               

               
Conread position:
               
18-308
               

               
Cow position:
               
chr11:52297323-52297018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 103
               

               
Conread position:
               
18-311
               

               
Cow position:
               
chr11:36112320-36112616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
21, 57
               

               
Conread position:
               
19-229
               

               
Cow position:
               
chr11:7590092-7590303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
26, 119
               

               
Conread position:
               
19-243
               

               
Cow position:
               
chr11:29960194-29960421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
26, 122
               

               
Conread position:
               
19-243
               

               
Cow position:
               
chr11:67615348-67615121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
26, 80
               

               
Conread position:
               
19-244
               

               
Cow position:
               
chr11:26535675-26535913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
26, 62
               

               
Conread position:
               
19-244
               

               
Cow position:
               
chr11:29308473-29308711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
19-276
               

               
Cow position:
               
chr11:34113162-34113426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
29, 196
               

               
Conread position:
               
19-287
               

               
Cow position:
               
chr11:6233981-6233694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
19-291
               

               
Cow position:
               
chr11:55761769-55762044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
26, 178
               

               
Conread position:
               
19-295
               

               
Cow position:
               
chr11:35213268-35212978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
55, 28
               

               
Conread position:
               
19-301
               

               
Cow position:
               
chr11:55052779-55053061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
119, 26
               

               
Conread position:
               
19-307
               

               
Cow position:
               
chr11:39060702-39060400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
19, 53
               

               
Conread position:
               
20-156
               

               
Cow position:
               
chr11:2811831-2811690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
20-212
               

               
Cow position:
               
chr11:42359012-42359215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
20-212
               

               
Cow position:
               
chr11:71341566-71341369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
20-228
               

               
Cow position:
               
chr11:32436231-32436446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
25, 155
               

               
Conread position:
               
20-229
               

               
Cow position:
               
chr11:34829882-34829673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
25, 118
               

               
Conread position:
               
20-231
               

               
Cow position:
               
chr11:6633605-6633825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
20-231
               

               
Cow position:
               
chr11:41293918-41293703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 117
               

               
Conread position:
               
20-231
               

               
Cow position:
               
chr11:70609686-70609913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
33, 151
               

               
Conread position:
               
20-233
               

               
Cow position:
               
chr11:20602123-20602341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
42, 150
               

               
Conread position:
               
20-234
               

               
Cow position:
               
chr11:42044096-42043879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
22, 117
               

               
Conread position:
               
20-244
               

               
Cow position:
               
chr11:22977971-22977748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
25, 58
               

               
Conread position:
               
20-244
               

               
Cow position:
               
chr11:56288447-56288674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
25, 42
               

               
Conread position:
               
20-244
               

               
Cow position:
               
chr11:77745356-77745120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
20-291
               

               
Cow position:
               
chr11:30210806-30211073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
21, 89
               

               
Conread position:
               
20-292
               

               
Cow position:
               
chr11:13043246-13042959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
20-293
               

               
Cow position:
               
chr11:55744371-55744660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
25, 50
               

               
Conread position:
               
20-306
               

               
Cow position:
               
chr11:83230497-83230211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
25, 51
               

               
Conread position:
               
20-321
               

               
Cow position:
               
chr11:18484272-18483984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
25, 96
               

               
Conread position:
               
25-198
               

               
Cow position:
               
chr11:52983581-52983757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
25-244
               

               
Cow position:
               
chr11:30370012-30370231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
23, 97
               

               
Conread position:
               
25-244
               

               
Cow position:
               
chr11:62813045-62812823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
38, 21
               

               
Conread position:
               
25-287
               

               
Cow position:
               
chr11:37974832-37975103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
39, 21
               

               
Conread position:
               
25-287
               

               
Cow position:
               
chr11:41986139-41985864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
20, 47
               

               
Conread position:
               
25-287
               

               
Cow position:
               
chr11:77546322-77546580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
20, 32
               

               
Conread position:
               
25-293
               

               
Cow position:
               
chr11:37804651-37804361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
25-297
               

               
Cow position:
               
chr11:42083377-42083647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 114
               

               
Conread position:
               
25-307
               

               
Cow position:
               
chr11:54134167-54133903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
20, 46
               

               
Conread position:
               
26-305
               

               
Cow position:
               
chr11:46746537-46746838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
29-203
               

               
Cow position:
               
chr11:69652877-69652695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 116
               

               
Conread position:
               
29-231
               

               
Cow position:
               
chr11:43430548-43430341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
16, 115
               

               
Conread position:
               
29-231
               

               
Cow position:
               
chr11:77128561-77128775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
29-233
               

               
Cow position:
               
chr11:70278199-70277998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
16, 42
               

               
Conread position:
               
29-243
               

               
Cow position:
               
chr11:4199181-4199402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
16, 49
               

               
Conread position:
               
29-275
               

               
Cow position:
               
chr11:48474612-48474881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
29-287
               

               
Cow position:
               
chr11:25791784-25791509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
13, 44
               

               
Conread position:
               
29-288
               

               
Cow position:
               
chr11:9368735-9368991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
16, 113
               

               
Conread position:
               
29-290
               

               
Cow position:
               
chr11:51729196-51729462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
19, 49
               

               
Conread position:
               
29-298
               

               
Cow position:
               
chr11:6194316-6194583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
19, 70
               

               
Conread position:
               
30-210
               

               
Cow position:
               
chr11:32398546-32398729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
15, 117
               

               
Conread position:
               
30-219
               

               
Cow position:
               
chr11:46952864-46953050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
15, 46
               

               
Conread position:
               
31-230
               

               
Cow position:
               
chr11:62778357-62778555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
14, 82
               

               
Conread position:
               
32-220
               

               
Cow position:
               
chr11:7013832-7013642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 84
               

               
Conread position:
               
32-223
               

               
Cow position:
               
chr11:53147627-53147425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
13, 107
               

               
Conread position:
               
32-230
               

               
Cow position:
               
chr11:63909748-63909553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
32-231
               

               
Cow position:
               
chr11:59702396-59702606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
13, 49
               

               
Conread position:
               
32-244
               

               
Cow position:
               
chr11:1067531-1067309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
32-290
               

               
Cow position:
               
chr11:70978819-70978548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
16, 50
               

               
Conread position:
               
32-294
               

               
Cow position:
               
chr11:19946347-19946612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
42, 160
               

               
Conread position:
               
32-294
               

               
Cow position:
               
chr11:41603778-41603510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
13, 157
               

               
Conread position:
               
32-298
               

               
Cow position:
               
chr11:35536499-35536770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
13, 115
               

               
Conread position:
               
32-304
               

               
Cow position:
               
chr11:21507915-21508212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
35-231
               

               
Cow position:
               
chr11:37118621-37118833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 103
               

               
Conread position:
               
35-231
               

               
Cow position:
               
chr11:63917557-63917362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
93, 35
               

               
Conread position:
               
35-244
               

               
Cow position:
               
chr11:47724817-47725019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 75
               

               
Conread position:
               
35-273
               

               
Cow position:
               
chr11:27565250-27565486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
10, 36
               

               
Conread position:
               
35-292
               

               
Cow position:
               
chr11:84890806-84890542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
10, 135
               

               
Conread position:
               
36-208
               

               
Cow position:
               
chr11:33526969-33527144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
36-211
               

               
Cow position:
               
chr11:76606591-76606767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
9, 45
               

               
Conread position:
               
36-212
               

               
Cow position:
               
chr11:4653062-4652877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
9, 53
               

               
Conread position:
               
36-212
               

               
Cow position:
               
chr11:15373763-15373935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
9, 35
               

               
Conread position:
               
36-212
               

               
Cow position:
               
chr11:87155437-87155615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
38, 10
               

               
Conread position:
               
36-226
               

               
Cow position:
               
chr11:22747414-22747221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
36-293
               

               
Cow position:
               
chr11:37919129-37918858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
37-175
               

               
Cow position:
               
chr11:49231790-49231932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
8, 25
               

               
Conread position:
               
37-194
               

               
Cow position:
               
chr11:55203543-55203382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
37-237
               

               
Cow position:
               
chr11:2933068-2933266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
8, 25
               

               
Conread position:
               
37-244
               

               
Cow position:
               
chr11:41313740-41313532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
8, 182
               

               
Conread position:
               
37-290
               

               
Cow position:
               
chr11:64101699-64101960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
8, 34
               

               
Conread position:
               
37-295
               

               
Cow position:
               
chr11:40459028-40459298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
96, 43
               

               
Conread position:
               
37-298
               

               
Cow position:
               
chr11:72870817-72871092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
8, 147
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr11:13864185-13863899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 44
               

               
Conread position:
               
38-219
               

               
Cow position:
               
chr11:3739870-3740055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
7, 175
               

               
Conread position:
               
38-227
               

               
Cow position:
               
chr11:38577853-38577668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
43, 8
               

               
Conread position:
               
38-231
               

               
Cow position:
               
chr11:5789973-5789785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
7, 39
               

               
Conread position:
               
38-244
               

               
Cow position:
               
chr11:35926987-35926779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
36, 8
               

               
Conread position:
               
38-286
               

               
Cow position:
               
chr11:23272083-23271823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 8
               

               
Conread position:
               
38-293
               

               
Cow position:
               
chr11:47125465-47125714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 108
               

               
Conread position:
               
39-231
               

               
Cow position:
               
chr11:66518409-66518600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
36, 138
               

               
Conread position:
               
39-244
               

               
Cow position:
               
chr11:22676035-22676241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
24, 17
               

               
Conread position:
               
40-230
               

               
Cow position:
               
chr11:3282954-3283139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
168, 30
               

               
Conread position:
               
40-231
               

               
Cow position:
               
chr11:70825871-70826063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
41, 31
               

               
Conread position:
               
40-244
               

               
Cow position:
               
chr11:53510581-53510372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
24, 100
               

               
Conread position:
               
40-294
               

               
Cow position:
               
chr11:7924671-7924413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
12, 116
               

               
Conread position:
               
40-300
               

               
Cow position:
               
chr11:18785951-18785698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
41, 79
               

               
Conread position:
               
40-305
               

               
Cow position:
               
chr11:39462540-39462821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
40-313
               

               
Cow position:
               
chr11:41549412-41549131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
8, 72
               

               
Conread position:
               
46-286
               

               
Cow position:
               
chr11:38236178-38236428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
46-290
               

               
Cow position:
               
chr11:51196152-51195910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
16, 60
               

               
Conread position:
               
46-292
               

               
Cow position:
               
chr11:82107967-82107731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
31, 68
               

               
Conread position:
               
46-294
               

               
Cow position:
               
chr11:64048332-64048581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 25
               

               
Conread position:
               
46-295
               

               
Cow position:
               
chr11:16342304-16342056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 174
               

               
Conread position:
               
46-298
               

               
Cow position:
               
chr11:48295959-48296220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
19, 72
               

               
Conread position:
               
46-308
               

               
Cow position:
               
chr11:64104923-64105198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
14, 59
               

               
Conread position:
               
48-208
               

               
Cow position:
               
chr11:36986884-36987041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
90, 21
               

               
Conread position:
               
48-244
               

               
Cow position:
               
chr11:36920651-36920445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
48-297
               

               
Cow position:
               
chr11:47837246-47837514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
26, 68
               

               
Conread position:
               
50-233
               

               
Cow position:
               
chr11:68173461-68173647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 162
               

               
Conread position:
               
52-318
               

               
Cow position:
               
chr11:70422658-70422382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
29, 36
               

               
Conread position:
               
54-244
               

               
Cow position:
               
chr11:26633072-26632883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
90, 7
               

               
Conread position:
               
54-290
               

               
Cow position:
               
chr11:4207246-4207498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
8, 141
               

               
Conread position:
               
54-296
               

               
Cow position:
               
chr11:76835696-76835447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
18, 202
               

               
Conread position:
               
54-298
               

               
Cow position:
               
chr11:30639013-30638757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
55-244
               

               
Cow position:
               
chr11:1380610-1380806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
56-301
               

               
Cow position:
               
chr11:64107573-64107320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
8, 23
               

               
Conread position:
               
59-310
               

               
Cow position:
               
chr11:13499956-13500217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
12, 56
               

               
Conread position:
               
60-231
               

               
Cow position:
               
chr11:44016918-44017091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
81, 17
               

               
Conread position:
               
62-242
               

               
Cow position:
               
chr11:71935010-71934829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
76, 129
               

               
Conread position:
               
63-301
               

               
Cow position:
               
chr11:69168528-69168786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
65-222
               

               
Cow position:
               
chr11:71110838-71110997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
65-304
               

               
Cow position:
               
chr11:77013733-77013972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
141, 15
               

               
Conread position:
               
67-277
               

               
Cow position:
               
chr11:39249921-39250138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
15, 113
               

               
Conread position:
               
67-309
               

               
Cow position:
               
chr11:5219210-5218957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
72, 60
               

               
Conread position:
               
68-209
               

               
Cow position:
               
chr11:61130715-61130574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 24
               

               
Conread position:
               
69-294
               

               
Cow position:
               
chr11:37278273-37278044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
69-297
               

               
Cow position:
               
chr11:8584278-8584510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
12, 98
               

               
Conread position:
               
69-301
               

               
Cow position:
               
chr11:897627-897862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
69, 14
               

               
Conread position:
               
70-193
               

               
Cow position:
               
chr11:71482332-71482456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
70-210
               

               
Cow position:
               
chr11:41809541-41809399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
70-212
               

               
Cow position:
               
chr11:61137223-61137079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
70-213
               

               
Cow position:
               
chr11:16320238-16320380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
11, 43
               

               
Conread position:
               
70-225
               

               
Cow position:
               
chr11:33697593-33697745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
11, 94
               

               
Conread position:
               
70-244
               

               
Cow position:
               
chr11:27913237-27913414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
70-279
               

               
Cow position:
               
chr11:18543553-18543345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
139, 66
               

               
Conread position:
               
70-286
               

               
Cow position:
               
chr11:48512117-48512326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
67, 57
               

               
Conread position:
               
70-290
               

               
Cow position:
               
chr11:84977407-84977188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
11, 153
               

               
Conread position:
               
70-293
               

               
Cow position:
               
chr11:30808641-30808407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
71-202
               

               
Cow position:
               
chr11:34106716-34106584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
71-212
               

               
Cow position:
               
chr11:30925109-30925250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 108
               

               
Conread position:
               
71-213
               

               
Cow position:
               
chr11:21910674-21910530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
71-225
               

               
Cow position:
               
chr11:62663279-62663126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 65
               

               
Conread position:
               
71-231
               

               
Cow position:
               
chr11:27932228-27932397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
71-231
               

               
Cow position:
               
chr11:30888330-30888163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 60
               

               
Conread position:
               
71-231
               

               
Cow position:
               
chr11:50072891-50073052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
71-231
               

               
Cow position:
               
chr11:61454560-61454402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
71-244
               

               
Cow position:
               
chr11:29677155-29677336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
71-244
               

               
Cow position:
               
chr11:35109584-35109408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
62, 56
               

               
Conread position:
               
71-286
               

               
Cow position:
               
chr11:20205897-20205675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
67, 8
               

               
Conread position:
               
71-289
               

               
Cow position:
               
chr11:17721849-17721615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
71-292
               

               
Cow position:
               
chr11:63484899-63485121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
10, 46
               

               
Conread position:
               
71-293
               

               
Cow position:
               
chr11:11533974-11533745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
143, 114
               

               
Conread position:
               
71-298
               

               
Cow position:
               
chr11:41131-41365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 44
               

               
Conread position:
               
71-311
               

               
Cow position:
               
chr11:8669964-8670225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
72-213
               

               
Cow position:
               
chr11:7307585-7307730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
9, 90
               

               
Conread position:
               
72-215
               

               
Cow position:
               
chr11:62754365-62754219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
72-215
               

               
Cow position:
               
chr11:83579220-83579078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 15
               

               
Conread position:
               
72-225
               

               
Cow position:
               
chr11:84498996-84498846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
9, 56
               

               
Conread position:
               
72-231
               

               
Cow position:
               
chr11:29786544-29786384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
72-231
               

               
Cow position:
               
chr11:82289536-82289695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
9, 65
               

               
Conread position:
               
72-234
               

               
Cow position:
               
chr11:82731044-82730880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
72-293
               

               
Cow position:
               
chr11:35669998-35669776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
9, 104
               

               
Conread position:
               
72-301
               

               
Cow position:
               
chr11:70483897-70483653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
72-304
               

               
Cow position:
               
chr11:30172263-30172504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
9, 61
               

               
Conread position:
               
72-304
               

               
Cow position:
               
chr11:79884445-79884676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
66, 17
               

               
Conread position:
               
73-234
               

               
Cow position:
               
chr11:34692808-34692971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
8, 136
               

               
Conread position:
               
73-244
               

               
Cow position:
               
chr11:45849544-45849367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
73-272
               

               
Cow position:
               
chr11:39855058-39854853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
132, 57
               

               
Conread position:
               
73-286
               

               
Cow position:
               
chr11:18447537-18447318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
8, 66
               

               
Conread position:
               
74-222
               

               
Cow position:
               
chr11:48063845-48063695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
74-231
               

               
Cow position:
               
chr11:56290467-56290626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
80-212
               

               
Cow position:
               
chr11:17321610-17321745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 74
               

               
Conread position:
               
80-212
               

               
Cow position:
               
chr11:81931149-81931021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
80-231
               

               
Cow position:
               
chr11:30272968-30272825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
80-231
               

               
Cow position:
               
chr11:71345361-71345206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
80-236
               

               
Cow position:
               
chr11:29946951-29946793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
80-237
               

               
Cow position:
               
chr11:53717844-53717684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
80-243
               

               
Cow position:
               
chr11:18608275-18608109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
58, 126
               

               
Conread position:
               
80-243
               

               
Cow position:
               
chr11:62889931-62889764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
80-244
               

               
Cow position:
               
chr11:34136206-34136370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
58, 33
               

               
Conread position:
               
80-244
               

               
Cow position:
               
chr11:58927546-58927702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
80-274
               

               
Cow position:
               
chr11:34467534-34467733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
133, 17
               

               
Conread position:
               
80-293
               

               
Cow position:
               
chr11:72869855-72869652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
55, 104
               

               
Conread position:
               
80-294
               

               
Cow position:
               
chr11:28078466-28078680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
133, 56
               

               
Conread position:
               
80-297
               

               
Cow position:
               
chr11:27462135-27461917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
150, 160
               

               
Conread position:
               
80-301
               

               
Cow position:
               
chr11:17227679-17227454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
155, 52
               

               
Conread position:
               
80-305
               

               
Cow position:
               
chr11:80616206-80616417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 76
               

               
Conread position:
               
81-228
               

               
Cow position:
               
chr11:58938781-58938635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
57, 128
               

               
Conread position:
               
81-230
               

               
Cow position:
               
chr11:58173589-58173738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
52, 62
               

               
Conread position:
               
81-235
               

               
Cow position:
               
chr11:18587632-18587473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
81-288
               

               
Cow position:
               
chr11:46427444-46427222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
83-212
               

               
Cow position:
               
chr11:62609570-62609700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
84-231
               

               
Cow position:
               
chr11:67312747-67312895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
84-287
               

               
Cow position:
               
chr11:70458007-70458229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
5, 111
               

               
Conread position:
               
86-244
               

               
Cow position:
               
chr11:21173465-21173308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
52, 24
               

               
Conread position:
               
86-271
               

               
Cow position:
               
chr11:64408945-64409134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
91, 44
               

               
Conread position:
               
86-298
               

               
Cow position:
               
chr11:63382222-63382002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
87-242
               

               
Cow position:
               
chr11:64090127-64089971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
52, 138
               

               
Conread position:
               
87-260
               

               
Cow position:
               
chr11:81138179-81138358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
9, 73
               

               
Conread position:
               
87-304
               

               
Cow position:
               
chr11:85571835-85571606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
51, 15
               

               
Conread position:
               
89-213
               

               
Cow position:
               
chr11:9698874-9698995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
89-298
               

               
Cow position:
               
chr11:43914263-43914489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
90-293
               

               
Cow position:
               
chr11:45350539-45350320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
48, 110
               

               
Conread position:
               
91-285
               

               
Cow position:
               
chr11:3797691-3797886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
47, 76
               

               
Conread position:
               
92-211
               

               
Cow position:
               
chr11:32782909-32782789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
92-298
               

               
Cow position:
               
chr11:78820126-78820344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
46, 52
               

               
Conread position:
               
93-303
               

               
Cow position:
               
chr11:17559106-17559317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
43, 85
               

               
Conread position:
               
94-202
               

               
Cow position:
               
chr11:35363458-35363567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
97-217
               

               
Cow position:
               
chr11:15683000-15682879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
97-244
               

               
Cow position:
               
chr11:49207691-49207840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
36, 10
               

               
Conread position:
               
97-298
               

               
Cow position:
               
chr11:17517378-17517595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
97-312
               

               
Cow position:
               
chr11:46884353-46884588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
100-231
               

               
Cow position:
               
chr11:18792085-18791952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
100-292
               

               
Cow position:
               
chr11:29482453-29482252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
101-301
               

               
Cow position:
               
chr11:9699261-9699054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
101-307
               

               
Cow position:
               
chr11:18189752-18189547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
111, 139
               

               
Conread position:
               
102-301
               

               
Cow position:
               
chr11:37100184-37099972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
107, 33
               

               
Conread position:
               
102-304
               

               
Cow position:
               
chr11:19577926-19578136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
102-305
               

               
Cow position:
               
chr11:15366988-15366776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
103-215
               

               
Cow position:
               
chr11:62808520-62808408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
34, 48
               

               
Conread position:
               
103-231
               

               
Cow position:
               
chr11:37982592-37982463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
104-286
               

               
Cow position:
               
chr11:37336102-37335921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
104-309
               

               
Cow position:
               
chr11:49396539-49396322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
34, 195
               

               
Conread position:
               
105-234
               

               
Cow position:
               
chr11:30805145-30805017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 10
               

               
Conread position:
               
105-287
               

               
Cow position:
               
chr11:31901173-31901355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
17, 105
               

               
Conread position:
               
105-297
               

               
Cow position:
               
chr11:48900857-48900665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
33, 133
               

               
Conread position:
               
107-231
               

               
Cow position:
               
chr11:47110242-47110363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
107-293
               

               
Cow position:
               
chr11:19549474-19549667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
126, 23
               

               
Conread position:
               
108-294
               

               
Cow position:
               
chr11:1485236-1485042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
113-291
               

               
Cow position:
               
chr11:35881906-35882079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 106
               

               
Conread position:
               
117-230
               

               
Cow position:
               
chr11:59916147-59916261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
21, 10
               

               
Conread position:
               
117-244
               

               
Cow position:
               
chr11:60720456-60720325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
117-287
               

               
Cow position:
               
chr11:30322493-30322310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
117-296
               

               
Cow position:
               
chr11:29978337-29978160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
18, 99
               

               
Conread position:
               
117-304
               

               
Cow position:
               
chr11:19579016-19578820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
21, 73
               

               
Conread position:
               
117-304
               

               
Cow position:
               
chr11:81614514-81614323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
117-311
               

               
Cow position:
               
chr11:58185882-58186079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
21, 194
               

               
Conread position:
               
120-245
               

               
Cow position:
               
chr11:61178360-61178483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
18, 90
               

               
Conread position:
               
120-293
               

               
Cow position:
               
chr11:7571627-7571810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
120-308
               

               
Cow position:
               
chr11:80586277-80586471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
13, 113
               

               
Conread position:
               
121-290
               

               
Cow position:
               
chr11:65858086-65858251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
18, 88
               

               
Conread position:
               
121-298
               

               
Cow position:
               
chr11:45671366-45671185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
121-301
               

               
Cow position:
               
chr11:46499014-46499189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
17, 89
               

               
Conread position:
               
121-304
               

               
Cow position:
               
chr11:62016001-62015823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
122-212
               

               
Cow position:
               
chr11:46452140-46452231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
92
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
123-292
               

               
Cow position:
               
chr11:84968382-84968554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 136
               

               
Conread position:
               
123-310
               

               
Cow position:
               
chr11:44176602-44176801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
124-296
               

               
Cow position:
               
chr11:77241712-77241895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
121, 110
               

               
Conread position:
               
124-298
               

               
Cow position:
               
chr11:19148130-19147946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
14, 62
               

               
Conread position:
               
127-292
               

               
Cow position:
               
chr11:13405023-13404861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
11, 88
               

               
Conread position:
               
127-312
               

               
Cow position:
               
chr11:38223778-38223584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
11, 59
               

               
Conread position:
               
142-291
               

               
Cow position:
               
chr11:75915019-75915174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
147-298
               

               
Cow position:
               
chr11:2937633-2937477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
172-306
               

               
Cow position:
               
chr11:19721005-19721143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
300-472
               

               
Cow position:
               
chr11:17592951-17592793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               
Show alignments to all cow chromosomes.