Non-Coding RNA Search

Cow genome map


           Conread name:
           rcbl0_009068.y1
        

               Conread position:
               6-222
               

               Cow position:
               chr29:11646993-11647215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               39, 9
               

               Conread position:
               6-280
               

               Cow position:
               chr29:40117471-40117757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               29, 7
               

               Conread position:
               6-292
               

               Cow position:
               chr29:2744370-2744064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               46, 187
               

               Conread position:
               7-144
               

               Cow position:
               chr29:12004858-12004720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               104
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               7-232
               

               Cow position:
               chr29:26654133-26653914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               38, 25
               

               Conread position:
               7-244
               

               Cow position:
               chr29:4625094-4624853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               41, 132
               

               Conread position:
               7-288
               

               Cow position:
               chr29:23389653-23389366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               193
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               38, 134
               

               Conread position:
               7-298
               

               Cow position:
               chr29:27858697-27858998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               56, 39
               

               Conread position:
               7-313
               

               Cow position:
               chr29:19428562-19428876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               220
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               38, 183
               

               Conread position:
               9-277
               

               Cow position:
               chr29:4367627-4367893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               185
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               39, 215
               

               Conread position:
               11-234
               

               Cow position:
               chr29:31489228-31489451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               37, 70
               

               Conread position:
               11-244
               

               Cow position:
               chr29:29795478-29795236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               37, 70
               

               Conread position:
               14-227
               

               Cow position:
               chr29:42886461-42886670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               124, 6
               

               Conread position:
               14-291
               

               Cow position:
               chr29:356230-356509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               197
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               36, 6
               

               Conread position:
               14-293
               

               Cow position:
               chr29:34744713-34744424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               206
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               12, 117
               

               Conread position:
               15-292
               

               Cow position:
               chr29:6207976-6208245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               30, 5
               

               Conread position:
               15-293
               

               Cow position:
               chr29:37618212-37618514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               219
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               33, 5
               

               Conread position:
               16-289
               

               Cow position:
               chr29:26778792-26779078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               187
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               67, 30
               

               Conread position:
               16-289
               

               Cow position:
               chr29:40583705-40583986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               29, 113
               

               Conread position:
               16-293
               

               Cow position:
               chr29:26259389-26259682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               16-304
               

               Cow position:
               chr29:21196740-21196435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               32, 54
               

               Conread position:
               16-304
               

               Cow position:
               chr29:22068834-22068525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               219
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               32, 183
               

               Conread position:
               17-167
               

               Cow position:
               chr29:2071660-2071505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               115
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               17-191
               

               Cow position:
               chr29:41365025-41365199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               129
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               28, 133
               

               Conread position:
               17-201
               

               Cow position:
               chr29:2984801-2984990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               28, 137
               

               Conread position:
               17-202
               

               Cow position:
               chr29:28868549-28868744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               59, 52
               

               Conread position:
               17-203
               

               Cow position:
               chr29:19821200-19821385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               135
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               28, 55
               

               Conread position:
               17-203
               

               Cow position:
               chr29:32290521-32290711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               17-209
               

               Cow position:
               chr29:1229521-1229715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               42, 30
               

               Conread position:
               17-209
               

               Cow position:
               chr29:27873517-27873709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               149
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               43, 37
               

               Conread position:
               17-211
               

               Cow position:
               chr29:17409248-17409445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               17-212
               

               Cow position:
               chr29:25333549-25333350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               53, 29
               

               Conread position:
               17-212
               

               Cow position:
               chr29:28166300-28166111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               141
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               28, 17
               

               Conread position:
               17-212
               

               Cow position:
               chr29:39567600-39567792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               28, 55
               

               Conread position:
               17-213
               

               Cow position:
               chr29:10235220-10235026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               143
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               28, 118
               

               Conread position:
               17-214
               

               Cow position:
               chr29:6015035-6015239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               28, 120
               

               Conread position:
               17-215
               

               Cow position:
               chr29:44378502-44378306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               23, 124
               

               Conread position:
               17-221
               

               Cow position:
               chr29:25474833-25475043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               17-222
               

               Cow position:
               chr29:40994977-40994770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               17-226
               

               Cow position:
               chr29:6286245-6286036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               28, 54
               

               Conread position:
               17-228
               

               Cow position:
               chr29:2263084-2262868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               28, 125
               

               Conread position:
               17-228
               

               Cow position:
               chr29:13639457-13639239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               17-228
               

               Cow position:
               chr29:21941512-21941730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               17-229
               

               Cow position:
               chr29:11053946-11053732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               17-230
               

               Cow position:
               chr29:24252151-24252360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               40, 101
               

               Conread position:
               17-231
               

               Cow position:
               chr29:847728-847512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               54, 28
               

               Conread position:
               17-231
               

               Cow position:
               chr29:24952601-24952811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               148
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               28, 144
               

               Conread position:
               17-231
               

               Cow position:
               chr29:25088665-25088874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               198, 31
               

               Conread position:
               17-231
               

               Cow position:
               chr29:26559328-26559116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               23, 15
               

               Conread position:
               17-231
               

               Cow position:
               chr29:31813861-31814069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               28, 50
               

               Conread position:
               17-231
               

               Cow position:
               chr29:38580890-38581108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               160
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               28, 197
               

               Conread position:
               17-231
               

               Cow position:
               chr29:42771562-42771765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               28, 36
               

               Conread position:
               17-241
               

               Cow position:
               chr29:40096876-40097101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               169
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               28, 128
               

               Conread position:
               17-244
               

               Cow position:
               chr29:9709608-9709837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               28, 54
               

               Conread position:
               17-244
               

               Cow position:
               chr29:35084309-35084078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               28, 41
               

               Conread position:
               17-280
               

               Cow position:
               chr29:30440844-30441131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               210
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               28, 169
               

               Conread position:
               17-282
               

               Cow position:
               chr29:15947084-15947363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               207
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               46, 28
               

               Conread position:
               17-286
               

               Cow position:
               chr29:5409227-5408944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               58, 44
               

               Conread position:
               17-287
               

               Cow position:
               chr29:2055971-2056259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               206
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               17-287
               

               Cow position:
               chr29:16309655-16309920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               28, 38
               

               Conread position:
               17-287
               

               Cow position:
               chr29:22778264-22777982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               202
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               28, 253
               

               Conread position:
               17-290
               

               Cow position:
               chr29:13486862-13487124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               28, 157
               

               Conread position:
               17-290
               

               Cow position:
               chr29:17297047-17297340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               17-291
               

               Cow position:
               chr29:23697892-23698173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               211
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               22, 61
               

               Conread position:
               17-292
               

               Cow position:
               chr29:15738429-15738144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               184
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               17-292
               

               Cow position:
               chr29:22721286-22721557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               199
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               54, 28
               

               Conread position:
               17-294
               

               Cow position:
               chr29:2644390-2644115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               28, 73
               

               Conread position:
               17-294
               

               Cow position:
               chr29:3825886-3826173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               68, 29
               

               Conread position:
               17-295
               

               Cow position:
               chr29:22175600-22175897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               220
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               28, 66
               

               Conread position:
               17-296
               

               Cow position:
               chr29:29769438-29769146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               201
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               17-297
               

               Cow position:
               chr29:26017589-26017291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               211
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               64, 28
               

               Conread position:
               17-298
               

               Cow position:
               chr29:8862565-8862289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               197
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               31, 105
               

               Conread position:
               17-298
               

               Cow position:
               chr29:11677545-11677271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               28, 95
               

               Conread position:
               17-298
               

               Cow position:
               chr29:23874372-23874673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               219
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               28, 17
               

               Conread position:
               17-298
               

               Cow position:
               chr29:28775544-28775266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               196
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               58, 29
               

               Conread position:
               17-301
               

               Cow position:
               chr29:12025557-12025265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               219
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               28, 115
               

               Conread position:
               17-301
               

               Cow position:
               chr29:13028350-13028663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               35, 122
               

               Conread position:
               17-304
               

               Cow position:
               chr29:4120761-4121072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               216
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               17-305
               

               Cow position:
               chr29:11915733-11916038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               28, 119
               

               Conread position:
               17-306
               

               Cow position:
               chr29:22613339-22613638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               28, 174
               

               Conread position:
               17-309
               

               Cow position:
               chr29:3685599-3685299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               221
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               27, 37
               

               Conread position:
               17-310
               

               Cow position:
               chr29:34773821-34773527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               28, 68
               

               Conread position:
               17-312
               

               Cow position:
               chr29:27652716-27652415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               23, 152
               

               Conread position:
               17-328
               

               Cow position:
               chr29:41530760-41531092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               239
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               28, 182
               

               Conread position:
               17-337
               

               Cow position:
               chr29:32963469-32963771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               28, 54
               

               Conread position:
               18-230
               

               Cow position:
               chr29:11705037-11705240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               44, 60
               

               Conread position:
               18-231
               

               Cow position:
               chr29:8926549-8926331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               27, 16
               

               Conread position:
               18-231
               

               Cow position:
               chr29:12784042-12783833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               27, 61
               

               Conread position:
               18-231
               

               Cow position:
               chr29:32799794-32799583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               27, 88
               

               Conread position:
               18-233
               

               Cow position:
               chr29:26416265-26416483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               26, 103
               

               Conread position:
               18-234
               

               Cow position:
               chr29:13373213-13373434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               34, 63
               

               Conread position:
               18-285
               

               Cow position:
               chr29:17222327-17222613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               18-287
               

               Cow position:
               chr29:31928895-31929185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               209
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               23, 152
               

               Conread position:
               18-293
               

               Cow position:
               chr29:32894182-32894463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               27, 52
               

               Conread position:
               18-298
               

               Cow position:
               chr29:9912086-9912362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               27, 179
               

               Conread position:
               18-305
               

               Cow position:
               chr29:6337575-6337866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               206
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               32, 195
               

               Conread position:
               18-309
               

               Cow position:
               chr29:4520249-4520553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               27, 119
               

               Conread position:
               18-310
               

               Cow position:
               chr29:12626065-12625777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               34, 196
               

               Conread position:
               19-212
               

               Cow position:
               chr29:22936185-22936382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               26, 100
               

               Conread position:
               19-222
               

               Cow position:
               chr29:87101-86891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               26, 181
               

               Conread position:
               19-222
               

               Cow position:
               chr29:6293559-6293360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               29, 52
               

               Conread position:
               19-230
               

               Cow position:
               chr29:6844713-6844503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               114, 58
               

               Conread position:
               19-243
               

               Cow position:
               chr29:5892757-5892992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               50, 26
               

               Conread position:
               19-244
               

               Cow position:
               chr29:24292785-24293015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               36, 53
               

               Conread position:
               19-272
               

               Cow position:
               chr29:31926374-31926133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               188
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               26, 135
               

               Conread position:
               19-291
               

               Cow position:
               chr29:19762185-19762466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               26, 119
               

               Conread position:
               19-316
               

               Cow position:
               chr29:20770258-20770568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               216
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               26, 122
               

               Conread position:
               20-197
               

               Cow position:
               chr29:9455142-9454962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               125
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               20-200
               

               Cow position:
               chr29:12680074-12680255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               127
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               25, 51
               

               Conread position:
               20-212
               

               Cow position:
               chr29:13867295-13867099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               149
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               25, 5
               

               Conread position:
               20-212
               

               Cow position:
               chr29:43495964-43496151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               140
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               25, 87
               

               Conread position:
               20-221
               

               Cow position:
               chr29:463742-463533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               150
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               25, 180
               

               Conread position:
               20-292
               

               Cow position:
               chr29:7310598-7310867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               203
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               22, 35
               

               Conread position:
               20-293
               

               Cow position:
               chr29:34297655-34297365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               203
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               20-309
               

               Cow position:
               chr29:35442545-35442259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               25, 72
               

               Conread position:
               22-301
               

               Cow position:
               chr29:22519212-22518908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               223
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               23, 163
               

               Conread position:
               25-212
               

               Cow position:
               chr29:8005002-8004816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               20, 83
               

               Conread position:
               25-244
               

               Cow position:
               chr29:29057100-29057320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               20, 107
               

               Conread position:
               25-286
               

               Cow position:
               chr29:707030-706777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               187
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               20, 111
               

               Conread position:
               25-292
               

               Cow position:
               chr29:4085240-4085501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               23, 43
               

               Conread position:
               25-294
               

               Cow position:
               chr29:18021760-18021496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               196
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               24, 86
               

               Conread position:
               26-231
               

               Cow position:
               chr29:40299090-40298890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               112, 20
               

               Conread position:
               26-289
               

               Cow position:
               chr29:43183386-43183116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               190
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               112, 25
               

               Conread position:
               26-301
               

               Cow position:
               chr29:35292010-35292300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               19, 191
               

               Conread position:
               27-230
               

               Cow position:
               chr29:32926019-32926232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               18, 208
               

               Conread position:
               29-244
               

               Cow position:
               chr29:1325365-1325582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               16, 106
               

               Conread position:
               29-277
               

               Cow position:
               chr29:21443416-21443152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               31-303
               

               Cow position:
               chr29:32656358-32656652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               32-211
               

               Cow position:
               chr29:5186569-5186383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               32-212
               

               Cow position:
               chr29:5210414-5210602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               134
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               32-215
               

               Cow position:
               chr29:16195770-16195954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               13, 90
               

               Conread position:
               32-231
               

               Cow position:
               chr29:749982-749777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               147
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               13, 145
               

               Conread position:
               32-302
               

               Cow position:
               chr29:44988860-44988591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               188
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               30, 63
               

               Conread position:
               32-305
               

               Cow position:
               chr29:23825596-23825880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               13, 216
               

               Conread position:
               34-244
               

               Cow position:
               chr29:27926705-27926918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               149
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               10, 95
               

               Conread position:
               35-243
               

               Cow position:
               chr29:40633577-40633796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               10, 42
               

               Conread position:
               35-285
               

               Cow position:
               chr29:24604206-24603956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               175
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               27, 154
               

               Conread position:
               35-286
               

               Cow position:
               chr29:28195582-28195335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               10, 46
               

               Conread position:
               36-289
               

               Cow position:
               chr29:10653273-10653523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               9, 88
               

               Conread position:
               36-293
               

               Cow position:
               chr29:11434054-11434317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               193
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               12, 41
               

               Conread position:
               36-296
               

               Cow position:
               chr29:24624178-24624449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               9, 81
               

               Conread position:
               36-301
               

               Cow position:
               chr29:4444646-4444910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               9, 198
               

               Conread position:
               36-311
               

               Cow position:
               chr29:42630054-42630342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               207
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               24, 149
               

               Conread position:
               37-212
               

               Cow position:
               chr29:7103488-7103669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               37-231
               

               Cow position:
               chr29:18404182-18403985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               137
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               8, 110
               

               Conread position:
               37-289
               

               Cow position:
               chr29:18450202-18449937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               188
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               8, 76
               

               Conread position:
               37-289
               

               Cow position:
               chr29:20167355-20167624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               38-189
               

               Cow position:
               chr29:36830293-36830446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               38-242
               

               Cow position:
               chr29:36632928-36632718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               143
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               38-250
               

               Cow position:
               chr29:12309943-12310155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               7, 172
               

               Conread position:
               38-296
               

               Cow position:
               chr29:30351001-30350742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               185
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               7, 191
               

               Conread position:
               38-301
               

               Cow position:
               chr29:35458837-35458556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               198
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               46, 8
               

               Conread position:
               40-231
               

               Cow position:
               chr29:5995164-5994966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               143
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               22, 103
               

               Conread position:
               40-282
               

               Cow position:
               chr29:1011637-1011399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               185, 30
               

               Conread position:
               40-291
               

               Cow position:
               chr29:4691456-4691205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               22, 185
               

               Conread position:
               40-310
               

               Cow position:
               chr29:8669302-8669564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               192
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               32, 92
               

               Conread position:
               41-244
               

               Cow position:
               chr29:30548711-30548920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               144
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               41-244
               

               Cow position:
               chr29:34359043-34358833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               148
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               25, 205
               

               Conread position:
               43-212
               

               Cow position:
               chr29:43544662-43544492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               131
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               19, 69
               

               Conread position:
               46-229
               

               Cow position:
               chr29:40852872-40853056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               48-244
               

               Cow position:
               chr29:32733243-32733439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               142
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               25, 138
               

               Conread position:
               51-280
               

               Cow position:
               chr29:11696661-11696884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               30, 78
               

               Conread position:
               59-204
               

               Cow position:
               chr29:30918504-30918652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               110
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               60-243
               

               Cow position:
               chr29:5520529-5520341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               61-203
               

               Cow position:
               chr29:8686287-8686432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               115
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               61-212
               

               Cow position:
               chr29:7956034-7955879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               14, 113
               

               Conread position:
               69-244
               

               Cow position:
               chr29:24188101-24187919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               70-244
               

               Cow position:
               chr29:44684071-44684241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               133
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               67, 35
               

               Conread position:
               70-291
               

               Cow position:
               chr29:5788998-5789218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               63, 10
               

               Conread position:
               71-231
               

               Cow position:
               chr29:16365920-16365753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               131
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               71-231
               

               Cow position:
               chr29:42883989-42883827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               117
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               67, 86
               

               Conread position:
               71-234
               

               Cow position:
               chr29:29324452-29324293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               10, 65
               

               Conread position:
               71-235
               

               Cow position:
               chr29:5947836-5947671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               11, 47
               

               Conread position:
               71-301
               

               Cow position:
               chr29:4070596-4070834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               175
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               11, 60
               

               Conread position:
               71-304
               

               Cow position:
               chr29:1933603-1933353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               71-314
               

               Cow position:
               chr29:396381-396627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               10, 47
               

               Conread position:
               72-243
               

               Cow position:
               chr29:17109929-17110098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               9, 64
               

               Conread position:
               72-280
               

               Cow position:
               chr29:36357098-36357320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               9, 63
               

               Conread position:
               72-291
               

               Cow position:
               chr29:27819188-27819408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               9, 128
               

               Conread position:
               72-297
               

               Cow position:
               chr29:31981800-31982029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               9, 139
               

               Conread position:
               73-288
               

               Cow position:
               chr29:35258955-35259181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               73-294
               

               Cow position:
               chr29:501170-501406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               65, 39
               

               Conread position:
               73-304
               

               Cow position:
               chr29:35501684-35501449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               8, 164
               

               Conread position:
               74-287
               

               Cow position:
               chr29:28979526-28979317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               139, 56
               

               Conread position:
               74-297
               

               Cow position:
               chr29:31934350-31934585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               75-212
               

               Cow position:
               chr29:1220159-1220020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               110
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               76-244
               

               Cow position:
               chr29:7966220-7966389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               62, 134
               

               Conread position:
               78-295
               

               Cow position:
               chr29:21012365-21012158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               148
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               80-197
               

               Cow position:
               chr29:19559041-19558923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               95
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               80-231
               

               Cow position:
               chr29:39329625-39329471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               80-257
               

               Cow position:
               chr29:11042410-11042584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               57, 100
               

               Conread position:
               80-269
               

               Cow position:
               chr29:17154757-17154943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               80-286
               

               Cow position:
               chr29:32656114-32655895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               80-288
               

               Cow position:
               chr29:4423461-4423252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               58, 162
               

               Conread position:
               80-293
               

               Cow position:
               chr29:16278966-16279182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               151, 105
               

               Conread position:
               80-295
               

               Cow position:
               chr29:16290704-16290931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               80-296
               

               Cow position:
               chr29:8163849-8163619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               58, 32
               

               Conread position:
               82-280
               

               Cow position:
               chr29:3292928-3293135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               157
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               56, 120
               

               Conread position:
               82-298
               

               Cow position:
               chr29:31651391-31651612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               51, 162
               

               Conread position:
               83-230
               

               Cow position:
               chr29:29974034-29973886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               110
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               7, 27
               

               Conread position:
               83-234
               

               Cow position:
               chr29:34760432-34760284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               112
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               83-244
               

               Cow position:
               chr29:19949290-19949449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               121
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               14, 53
               

               Conread position:
               83-297
               

               Cow position:
               chr29:38754958-38754728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               85-230
               

               Cow position:
               chr29:24051398-24051253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               53, 82
               

               Conread position:
               85-293
               

               Cow position:
               chr29:19176930-19176710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               86-307
               

               Cow position:
               chr29:34359836-34359606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               52, 29
               

               Conread position:
               87-293
               

               Cow position:
               chr29:16200493-16200271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               87-309
               

               Cow position:
               chr29:35677558-35677320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               88-301
               

               Cow position:
               chr29:29308586-29308369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               10, 155
               

               Conread position:
               89-211
               

               Cow position:
               chr29:37046714-37046591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               99
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               95-275
               

               Cow position:
               chr29:23913400-23913210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               135
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               96-310
               

               Cow position:
               chr29:4022998-4023217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               132, 55
               

               Conread position:
               100-305
               

               Cow position:
               chr29:4441207-4440988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               28, 83
               

               Conread position:
               101-243
               

               Cow position:
               chr29:18878482-18878336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               101-301
               

               Cow position:
               chr29:14576858-14577070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               102-231
               

               Cow position:
               chr29:19060082-19059951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               102
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               36, 81
               

               Conread position:
               103-202
               

               Cow position:
               chr29:39285496-39285596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               101
               

               Alignm identity:
               83
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               109-301
               

               Cow position:
               chr29:11489571-11489382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               121, 14
               

               Conread position:
               110-230
               

               Cow position:
               chr29:29940647-29940769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               100
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               8, 102
               

               Conread position:
               117-231
               

               Cow position:
               chr29:33393693-33393810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               93
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               117-287
               

               Cow position:
               chr29:3538661-3538486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               118-293
               

               Cow position:
               chr29:27042290-27042477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               95, 14
               

               Conread position:
               120-291
               

               Cow position:
               chr29:43088329-43088509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               102, 15
               

               Conread position:
               121-295
               

               Cow position:
               chr29:26207994-26208166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               132
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               17, 108
               

               Conread position:
               121-296
               

               Cow position:
               chr29:37293058-37293235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               90, 14
               

               Conread position:
               121-304
               

               Cow position:
               chr29:10818431-10818244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               13, 112
               

               Conread position:
               122-231
               

               Cow position:
               chr29:26631061-26631171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               111
               

               Alignm identity:
               91
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               125-289
               

               Cow position:
               chr29:22652346-22652520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               127-306
               

               Cow position:
               chr29:31221774-31221961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               128-291
               

               Cow position:
               chr29:10192013-10191842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               128-301
               

               Cow position:
               chr29:1959920-1959742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               126
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               132-294
               

               Cow position:
               chr29:13091436-13091270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               124
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               87, 15
               

               Conread position:
               134-286
               

               Cow position:
               chr29:7381497-7381348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               83, 0
               
Show alignments to all cow chromosomes.
Conread position:	6-222
Cow position:	chr29:11646993-11647215 (view UCSC Genome Browser custom track)
Alignm length:	226
Alignm identity:	161
Alignm E-value:	5e-27
Alignm gaps (pig, cow):	39, 9
Conread position:	6-280
Cow position:	chr29:40117471-40117757 (view UCSC Genome Browser custom track)
Alignm length:	289
Alignm identity:	190
Alignm E-value:	3e-21
Alignm gaps (pig, cow):	29, 7
Conread position:	6-292
Cow position:	chr29:2744370-2744064 (view UCSC Genome Browser custom track)
Alignm length:	310
Alignm identity:	208
Alignm E-value:	1e-23
Alignm gaps (pig, cow):	46, 187
Conread position:	7-144
Cow position:	chr29:12004858-12004720 (view UCSC Genome Browser custom track)
Alignm length:	139
Alignm identity:	104
Alignm E-value:	9e-23
Alignm gaps (pig, cow):	45, 0
Conread position:	7-232
Cow position:	chr29:26654133-26653914 (view UCSC Genome Browser custom track)
Alignm length:	230
Alignm identity:	165
Alignm E-value:	2e-28
Alignm gaps (pig, cow):	38, 25
Conread position:	7-244
Cow position:	chr29:4625094-4624853 (view UCSC Genome Browser custom track)
Alignm length:	244
Alignm identity:	165
Alignm E-value:	1e-24
Alignm gaps (pig, cow):	41, 132
Conread position:	7-288
Cow position:	chr29:23389653-23389366 (view UCSC Genome Browser custom track)
Alignm length:	294
Alignm identity:	193
Alignm E-value:	8e-22
Alignm gaps (pig, cow):	38, 134
Conread position:	7-298
Cow position:	chr29:27858697-27858998 (view UCSC Genome Browser custom track)
Alignm length:	310
Alignm identity:	211
Alignm E-value:	1e-25
Alignm gaps (pig, cow):	56, 39
Conread position:	7-313
Cow position:	chr29:19428562-19428876 (view UCSC Genome Browser custom track)
Alignm length:	319
Alignm identity:	220
Alignm E-value:	4e-35
Alignm gaps (pig, cow):	38, 183
Conread position:	9-277
Cow position:	chr29:4367627-4367893 (view UCSC Genome Browser custom track)
Alignm length:	276
Alignm identity:	185
Alignm E-value:	9e-23
Alignm gaps (pig, cow):	39, 215
Conread position:	11-234
Cow position:	chr29:31489228-31489451 (view UCSC Genome Browser custom track)
Alignm length:	226
Alignm identity:	154
Alignm E-value:	4e-26
Alignm gaps (pig, cow):	37, 70
Conread position:	11-244
Cow position:	chr29:29795478-29795236 (view UCSC Genome Browser custom track)
Alignm length:	244
Alignm identity:	163
Alignm E-value:	8e-21
Alignm gaps (pig, cow):	37, 70
Conread position:	14-227
Cow position:	chr29:42886461-42886670 (view UCSC Genome Browser custom track)
Alignm length:	216
Alignm identity:	151
Alignm E-value:	1e-25
Alignm gaps (pig, cow):	124, 6
Conread position:	14-291
Cow position:	chr29:356230-356509 (view UCSC Genome Browser custom track)
Alignm length:	287
Alignm identity:	197
Alignm E-value:	6e-29
Alignm gaps (pig, cow):	36, 6
Conread position:	14-293
Cow position:	chr29:34744713-34744424 (view UCSC Genome Browser custom track)
Alignm length:	298
Alignm identity:	206
Alignm E-value:	4e-26
Alignm gaps (pig, cow):	12, 117
Conread position:	15-292
Cow position:	chr29:6207976-6208245 (view UCSC Genome Browser custom track)
Alignm length:	283
Alignm identity:	196
Alignm E-value:	2e-28
Alignm gaps (pig, cow):	30, 5
Conread position:	15-293
Cow position:	chr29:37618212-37618514 (view UCSC Genome Browser custom track)
Alignm length:	304
Alignm identity:	219
Alignm E-value:	4e-36
Alignm gaps (pig, cow):	33, 5
Conread position:	16-289
Cow position:	chr29:26778792-26779078 (view UCSC Genome Browser custom track)
Alignm length:	288
Alignm identity:	187
Alignm E-value:	8e-21
Alignm gaps (pig, cow):	67, 30
Conread position:	16-293
Cow position:	chr29:26259389-26259682 (view UCSC Genome Browser custom track)
Alignm length:	294
Alignm identity:	195
Alignm E-value:	1e-23
Alignm gaps (pig, cow):	34, 0
Conread position:	16-304
Cow position:	chr29:21196740-21196435 (view UCSC Genome Browser custom track)
Alignm length:	307
Alignm identity:	215
Alignm E-value:	1e-34
Alignm gaps (pig, cow):	32, 54