Cow genome map

Conread name: rcbl0_015095.y1

Conread position: 2-397
Cow position: chr11:30110534-30110137 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 32

Conread position: 2-581
Cow position: chr11:8829276-8829842 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 23

Conread position: 3-417
Cow position: chr11:67951370-67951796 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 146

Conread position: 3-441
Cow position: chr11:24601531-24601075 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 154

Conread position: 3-556
Cow position: chr11:12762672-12763225 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 3-558
Cow position: chr11:44915162-44915728 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 70

Conread position: 3-560
Cow position: chr11:26467826-26467260 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 153

Conread position: 3-566
Cow position: chr11:19507845-19507275 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 72

Conread position: 3-570
Cow position: chr11:52297646-52298222 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 26

Conread position: 3-571
Cow position: chr11:28382184-28381610 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 12

Conread position: 3-577
Cow position: chr11:259603-260216 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 153

Conread position: 3-580
Cow position: chr11:3796730-3796166 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 131

Conread position: 3-580
Cow position: chr11:10851640-10851045 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 144

Conread position: 3-580
Cow position: chr11:11991523-11990928 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 26

Conread position: 3-580
Cow position: chr11:23883856-23883278 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 70

Conread position: 3-580
Cow position: chr11:26121415-26121989 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 144

Conread position: 3-580
Cow position: chr11:26550995-26550407 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 105

Conread position: 3-580
Cow position: chr11:30701008-30700425 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 144

Conread position: 3-580
Cow position: chr11:31866176-31865564 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 145

Conread position: 3-580
Cow position: chr11:38235258-38235838 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 80

Conread position: 3-580
Cow position: chr11:50950497-50949879 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 69

Conread position: 3-580
Cow position: chr11:71333022-71332432 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 49

Conread position: 3-581
Cow position: chr11:30165076-30164502 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 144

Conread position: 3-581
Cow position: chr11:41599162-41599758 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 158

Conread position: 3-581
Cow position: chr11:42358701-42358132 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 40

Conread position: 3-581
Cow position: chr11:58399847-58399262 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 146

Conread position: 3-581
Cow position: chr11:63508010-63507441 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 64

Conread position: 3-581
Cow position: chr11:73512845-73513442 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 153

Conread position: 3-581
Cow position: chr11:84774688-84774095 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 144

Conread position: 4-388
Cow position: chr11:16757572-16757970 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 143

Conread position: 4-581
Cow position: chr11:26483095-26482501 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 101

Conread position: 9-412
Cow position: chr11:27906841-27906438 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 272

Conread position: 9-456
Cow position: chr11:79995237-79995690 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 22

Conread position: 9-477
Cow position: chr11:42373313-42372842 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 144

Conread position: 9-569
Cow position: chr11:9432893-9432324 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 26

Conread position: 9-576
Cow position: chr11:38843134-38842561 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 86

Conread position: 9-577
Cow position: chr11:58137231-58136651 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-578
Cow position: chr11:56463882-56463295 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 139

Conread position: 9-579
Cow position: chr11:25760264-25759685 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-579
Cow position: chr11:72369571-72368986 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-580
Cow position: chr11:1504475-1505065 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 138

Conread position: 9-580
Cow position: chr11:3238821-3238232 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 137

Conread position: 9-580
Cow position: chr11:8367080-8366491 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 138

Conread position: 9-580
Cow position: chr11:9388854-9388268 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 243

Conread position: 9-580
Cow position: chr11:17549678-17549089 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-580
Cow position: chr11:26592258-26592846 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-580
Cow position: chr11:27724387-27724970 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 167

Conread position: 9-580
Cow position: chr11:28226258-28226847 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-580
Cow position: chr11:30777483-30776894 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-580
Cow position: chr11:30929902-30929313 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-580
Cow position: chr11:35541557-35542137 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 141

Conread position: 9-580
Cow position: chr11:39152109-39151528 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 138

Conread position: 9-580
Cow position: chr11:41093355-41093931 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 126

Conread position: 9-580
Cow position: chr11:48167576-48168142 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 17

Conread position: 9-580
Cow position: chr11:51034796-51034207 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-580
Cow position: chr11:52846995-52846406 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-580
Cow position: chr11:62009281-62009870 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-580
Cow position: chr11:62792411-62791826 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 138

Conread position: 9-580
Cow position: chr11:63860125-63860712 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 332

Conread position: 9-580
Cow position: chr11:66389495-66390076 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-580
Cow position: chr11:73138091-73137523 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 75

Conread position: 9-580
Cow position: chr11:84531769-84532333 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 71

Conread position: 9-580
Cow position: chr11:84967628-84967039 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-581
Cow position: chr11:17037013-17037584 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 148

Conread position: 9-581
Cow position: chr11:20730706-20731292 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 52

Conread position: 9-581
Cow position: chr11:49935229-49935818 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 141

Conread position: 11-578
Cow position: chr11:40458690-40458109 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 15

Conread position: 11-578
Cow position: chr11:69402707-69403288 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 49

Conread position: 11-579
Cow position: chr11:2835777-2835196 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 77

Conread position: 12-578
Cow position: chr11:44255586-44255006 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 73

Conread position: 12-580
Cow position: chr11:416983-417542 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 63

Conread position: 12-580
Cow position: chr11:13087149-13087736 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 136

Conread position: 12-580
Cow position: chr11:27660753-27660162 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 134

Conread position: 12-580
Cow position: chr11:30255952-30255364 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 90

Conread position: 12-580
Cow position: chr11:41314812-41314227 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 135

Conread position: 12-580
Cow position: chr11:67848454-67849041 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 198

Conread position: 13-580
Cow position: chr11:26067613-26068186 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 111

Conread position: 14-580
Cow position: chr11:75256705-75256121 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 133

Conread position: 16-578
Cow position: chr11:63260699-63261274 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 131

Conread position: 16-580
Cow position: chr11:17279088-17279661 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 27

Conread position: 18-580
Cow position: chr11:25336644-25336070 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 129

Conread position: 21-580
Cow position: chr11:17854602-17854025 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 126

Conread position: 26-581
Cow position: chr11:3264326-3263754 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 135

Conread position: 27-475
Cow position: chr11:37160055-37159592 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 129

Conread position: 27-580
Cow position: chr11:16229163-16229716 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 110

Conread position: 29-507
Cow position: chr11:35262298-35262794 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 335
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 21, 9

Conread position: 29-555
Cow position: chr11:48659229-48658687 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 117

Conread position: 29-559
Cow position: chr11:26560826-26561369 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 372
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 23, 59

Conread position: 29-580
Cow position: chr11:31836683-31836115 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 118

Conread position: 38-517
Cow position: chr11:28394556-28394065 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 119

Conread position: 38-581
Cow position: chr11:59872296-59871745 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 109

Conread position: 39-417
Cow position: chr11:7321608-7321214 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 249
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 53, 285

Conread position: 39-442
Cow position: chr11:7325665-7325255 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 279
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 149, 116

Conread position: 44-441
Cow position: chr11:15353341-15352936 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 265
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 165, 118

Conread position: 45-579
Cow position: chr11:5583962-5584504 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 72

Conread position: 45-580
Cow position: chr11:21852761-21853320 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 101

Conread position: 50-561
Cow position: chr11:64844532-64844022 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 14

Conread position: 50-580
Cow position: chr11:12316584-12317139 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 96

Conread position: 50-580
Cow position: chr11:18920121-18920655 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 99

Conread position: 50-580
Cow position: chr11:23495230-23494683 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 96

Conread position: 59-537
Cow position: chr11:27073853-27074336 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 318
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 50, 105

Conread position: 60-580
Cow position: chr11:41105927-41106461 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 17

Conread position: 70-581
Cow position: chr11:7681412-7680893 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 53

Conread position: 76-522
Cow position: chr11:71078874-71078419 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 83

Conread position: 76-581
Cow position: chr11:15995949-15995424 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 23

Conread position: 91-581
Cow position: chr11:46413081-46412564 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 64

Conread position: 103-579
Cow position: chr11:8246609-8246123 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 43

Conread position: 103-579
Cow position: chr11:42793512-42794009 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 52

Conread position: 104-449
Cow position: chr11:41178375-41178018 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 256
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 22, 43

Conread position: 117-580
Cow position: chr11:45155335-45155816 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 29

Conread position: 119-579
Cow position: chr11:4266746-4267223 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 27

Conread position: 123-542
Cow position: chr11:2950712-2951120 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 270
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 37, 116

Conread position: 123-559
Cow position: chr11:44233814-44233377 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 32

Conread position: 142-580
Cow position: chr11:2567302-2567752 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 323
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 19, 132

Conread position: 203-449
Cow position: chr11:80471626-80471868 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 177
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 95, 42

Conread position: 204-440
Cow position: chr11:8233950-8234180 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 179
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 133, 10

Conread position: 211-412
Cow position: chr11:84723482-84723284 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 155
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 158, 167

Conread position: 211-441
Cow position: chr11:62881334-62881559 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 168
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 96, 106

Conread position: 211-531
Cow position: chr11:9079033-9079354 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 91

Conread position: 211-533
Cow position: chr11:8241802-8242130 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 126

Conread position: 211-560
Cow position: chr11:53280094-53280448 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 127

Conread position: 211-578
Cow position: chr11:67453958-67453588 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 112

Conread position: 211-579
Cow position: chr11:80789083-80789459 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 108

Conread position: 211-580
Cow position: chr11:1492568-1492917 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 256
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 125, 43

Conread position: 211-580
Cow position: chr11:2286018-2285644 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 118

Conread position: 211-580
Cow position: chr11:7719210-7719584 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 129

Conread position: 211-580
Cow position: chr11:43917739-43917365 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 129

Conread position: 211-580
Cow position: chr11:47757678-47758057 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 211-580
Cow position: chr11:57624882-57625259 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 130

Conread position: 211-580
Cow position: chr11:63479155-63478782 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 119

Conread position: 211-580
Cow position: chr11:74389500-74389130 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 91

Conread position: 211-580
Cow position: chr11:74929113-74928734 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 273

Conread position: 211-581
Cow position: chr11:12112235-12111857 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 129

Conread position: 211-581
Cow position: chr11:75354509-75354134 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 59

Conread position: 216-580
Cow position: chr11:8499362-8498998 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 89

Conread position: 217-411
Cow position: chr11:37290591-37290390 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 139
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 122, 0

Conread position: 217-580
Cow position: chr11:21896405-21896764 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 77

Conread position: 217-580
Cow position: chr11:53428708-53429091 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 205

Conread position: 217-580
Cow position: chr11:74990920-74990551 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 124

Conread position: 217-581
Cow position: chr11:38832180-38832547 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 123

Conread position: 221-580
Cow position: chr11:66943924-66944259 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 249
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 148, 28

Conread position: 224-568
Cow position: chr11:10094160-10093813 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 86

Conread position: 227-528
Cow position: chr11:46032463-46032767 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 211
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 140, 74

Conread position: 232-577
Cow position: chr11:4206465-4206108 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 250

Conread position: 232-577
Cow position: chr11:12077138-12077474 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 252
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 217, 70

Conread position: 234-581
Cow position: chr11:38069581-38069224 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 247
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 81, 68

Conread position: 235-581
Cow position: chr11:84134901-84135250 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 250
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 102, 36

Conread position: 238-581
Cow position: chr11:21728741-21729090 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 129

Conread position: 244-581
Cow position: chr11:10365130-10365466 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 87

Conread position: 248-581
Cow position: chr11:3230589-3230254 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 84

Conread position: 255-580
Cow position: chr11:86579199-86578851 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 249
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 47, 0

Conread position: 257-580
Cow position: chr11:3496302-3495974 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 72

Conread position: 259-580
Cow position: chr11:21620398-21620071 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 230
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 49, 71

Conread position: 270-581
Cow position: chr11:7377265-7376951 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 215
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 116, 32

Conread position: 275-580
Cow position: chr11:17997693-17998002 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 190
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 94, 15

Conread position: 283-581
Cow position: chr11:77776822-77777123 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 209
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 16, 57

Conread position: 301-577
Cow position: chr11:58804606-58804888 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 201
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 36, 65

Conread position: 303-581
Cow position: chr11:40487366-40487083 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 37

Conread position: 306-581
Cow position: chr11:25808535-25808817 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 17

Conread position: 314-581
Cow position: chr11:4675430-4675686 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 180
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 56, 127

Conread position: 330-578
Cow position: chr11:83285068-83284826 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 186
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 40, 158

Conread position: 330-581
Cow position: chr11:8018944-8018695 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 170
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 11, 154

Conread position: 330-581
Cow position: chr11:18146357-18146616 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 203
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 39, 6

Conread position: 330-581
Cow position: chr11:38638143-38638395 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 191
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 118, 34

Conread position: 334-580
Cow position: chr11:21371898-21372150 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 35, 0

Conread position: 336-580
Cow position: chr11:32108947-32108705 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 179
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 33, 84

Conread position: 337-579
Cow position: chr11:10959009-10958761 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 183
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 32, 199

Conread position: 340-581
Cow position: chr11:33733409-33733648 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 179
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 30, 156

Conread position: 340-581
Cow position: chr11:48982462-48982224 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 184
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 108, 22

Conread position: 340-581
Cow position: chr11:56228106-56227859 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 187
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 30, 141

Conread position: 342-581
Cow position: chr11:28631708-28631463 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 177
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 27, 194

Conread position: 348-578
Cow position: chr11:22933458-22933690 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 174
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 25, 153

Conread position: 348-580
Cow position: chr11:17980127-17980361 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 171
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 86, 16

Conread position: 351-580
Cow position: chr11:66732294-66732061 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 170
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 25, 72

Conread position: 354-580
Cow position: chr11:27922959-27922726 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 161
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 16, 0

Conread position: 372-581
Cow position: chr11:13062263-13062477 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 125
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 82, 0

Conread position: 374-579
Cow position: chr11:87154868-87155073 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 153
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 69, 126

Conread position: 392-580
Cow position: chr11:59583554-59583361 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 65, 141

Conread position: 407-580
Cow position: chr11:15128889-15128709 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 142
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 39, 103

Conread position: 415-581
Cow position: chr11:81316780-81316946 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 36, 12

Conread position: 446-580
Cow position: chr11:41177981-41177850 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 447-581
Cow position: chr11:44875541-44875407 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 101
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 447-581
Cow position: chr11:52128273-52128139 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 91, 83

Show alignments to all cow chromosomes.