Cow genome map

Conread name: rcbl0_015095.y1

Conread position: 3-407
Cow position: chr17:4107380-4107796 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 100

Conread position: 3-456
Cow position: chr17:7700075-7699605 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 294
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 150, 277

Conread position: 3-482
Cow position: chr17:41014845-41014358 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 79

Conread position: 3-491
Cow position: chr17:42258542-42258062 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 117

Conread position: 3-493
Cow position: chr17:148595-148092 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 144

Conread position: 3-553
Cow position: chr17:40802448-40801871 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 107

Conread position: 3-574
Cow position: chr17:36265597-36266171 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 61

Conread position: 3-579
Cow position: chr17:15351737-15351138 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 397
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 45, 18

Conread position: 3-580
Cow position: chr17:2201984-2201389 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 144

Conread position: 3-580
Cow position: chr17:8223390-8222797 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 121

Conread position: 3-580
Cow position: chr17:15439477-15438883 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 112

Conread position: 3-580
Cow position: chr17:16117795-16118367 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 62

Conread position: 3-580
Cow position: chr17:18201413-18200829 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 155

Conread position: 3-580
Cow position: chr17:21666686-21666096 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 144

Conread position: 3-580
Cow position: chr17:22563825-22563237 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 21

Conread position: 3-581
Cow position: chr17:8205618-8205037 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 153

Conread position: 3-581
Cow position: chr17:20215767-20215174 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 153

Conread position: 3-581
Cow position: chr17:27978791-27978192 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 148

Conread position: 3-581
Cow position: chr17:29083841-29083268 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 40

Conread position: 3-581
Cow position: chr17:29472118-29471530 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 145

Conread position: 3-581
Cow position: chr17:36746834-36747430 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 153

Conread position: 3-581
Cow position: chr17:37415230-37415797 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 122

Conread position: 4-437
Cow position: chr17:5898891-5899321 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 301
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 48, 93

Conread position: 4-566
Cow position: chr17:6072213-6071645 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 143

Conread position: 4-576
Cow position: chr17:29157067-29156469 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 30

Conread position: 4-578
Cow position: chr17:40811402-40810845 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 143

Conread position: 4-580
Cow position: chr17:15328964-15328373 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 143

Conread position: 6-580
Cow position: chr17:20093490-20094066 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 37

Conread position: 9-416
Cow position: chr17:13716626-13717033 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 15

Conread position: 9-452
Cow position: chr17:20507911-20508359 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 306

Conread position: 9-542
Cow position: chr17:31780796-31781341 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 353
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 41, 345

Conread position: 9-568
Cow position: chr17:16446801-16447378 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 116

Conread position: 9-569
Cow position: chr17:29080005-29079479 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 116

Conread position: 9-580
Cow position: chr17:2177653-2177072 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 114

Conread position: 9-580
Cow position: chr17:2265869-2265281 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 327

Conread position: 9-580
Cow position: chr17:4480202-4480790 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-580
Cow position: chr17:6123464-6122875 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 66

Conread position: 9-580
Cow position: chr17:6612703-6612114 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-580
Cow position: chr17:14243513-14242918 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-580
Cow position: chr17:19214729-19215303 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 138

Conread position: 9-580
Cow position: chr17:23320741-23321327 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 55

Conread position: 9-580
Cow position: chr17:24026304-24026891 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 139

Conread position: 9-580
Cow position: chr17:27791114-27791690 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-580
Cow position: chr17:29824279-29824869 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-580
Cow position: chr17:36284948-36284359 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-580
Cow position: chr17:43470910-43471499 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-581
Cow position: chr17:12477543-12476964 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 175

Conread position: 9-581
Cow position: chr17:14212340-14212927 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 72

Conread position: 9-581
Cow position: chr17:20090965-20091518 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 128

Conread position: 9-581
Cow position: chr17:20546818-20546227 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 11-580
Cow position: chr17:1568541-1569122 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 64

Conread position: 12-581
Cow position: chr17:3306262-3305666 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 77

Conread position: 13-580
Cow position: chr17:21767568-21766989 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 134

Conread position: 13-580
Cow position: chr17:38992430-38991845 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 138

Conread position: 13-581
Cow position: chr17:20391451-20390864 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 134

Conread position: 14-580
Cow position: chr17:1970827-1970243 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 133

Conread position: 26-580
Cow position: chr17:21717126-21716554 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 121

Conread position: 27-563
Cow position: chr17:453488-452955 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 120

Conread position: 27-577
Cow position: chr17:13921891-13921337 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 378
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 29, 94

Conread position: 27-579
Cow position: chr17:2179491-2178941 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 129

Conread position: 28-580
Cow position: chr17:4211591-4211022 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 107

Conread position: 33-581
Cow position: chr17:8450369-8449804 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 116

Conread position: 50-581
Cow position: chr17:15375009-15374496 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 90

Conread position: 58-428
Cow position: chr17:11386085-11385705 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 69

Conread position: 62-580
Cow position: chr17:15809615-15809079 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 84

Conread position: 69-579
Cow position: chr17:16869686-16870184 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 32

Conread position: 87-448
Cow position: chr17:12357475-12357858 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 271
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 122, 59

Conread position: 87-577
Cow position: chr17:7615088-7615592 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 68

Conread position: 116-578
Cow position: chr17:254668-254191 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 228

Conread position: 165-452
Cow position: chr17:20033911-20033636 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 198
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 44, 52

Conread position: 192-409
Cow position: chr17:4920926-4920702 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 158
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 43, 19

Conread position: 211-493
Cow position: chr17:25567663-25567378 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 118

Conread position: 211-575
Cow position: chr17:15334989-15335342 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 61

Conread position: 211-579
Cow position: chr17:15854199-15853827 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 105

Conread position: 211-580
Cow position: chr17:2244607-2244974 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 113

Conread position: 211-580
Cow position: chr17:14249643-14250016 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 80

Conread position: 211-580
Cow position: chr17:25739762-25739388 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 129

Conread position: 217-579
Cow position: chr17:1456920-1457286 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 63

Conread position: 221-491
Cow position: chr17:1883696-1883425 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 195
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 87, 22

Conread position: 222-580
Cow position: chr17:4635336-4635683 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 18

Conread position: 232-472
Cow position: chr17:8008026-8007790 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 168
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 67, 52

Conread position: 234-540
Cow position: chr17:36159597-36159902 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 62

Conread position: 234-581
Cow position: chr17:38829321-38828973 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 18

Conread position: 254-581
Cow position: chr17:29041482-29041808 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 236
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 50, 41

Conread position: 257-580
Cow position: chr17:21771100-21770772 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 233
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 50, 72

Conread position: 258-579
Cow position: chr17:17128423-17128098 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 73

Conread position: 283-581
Cow position: chr17:18324024-18324313 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 215
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 24, 48

Conread position: 291-581
Cow position: chr17:31233060-31232768 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 209
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 16, 213

Conread position: 299-521
Cow position: chr17:42313260-42313035 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 167
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 70, 17

Conread position: 307-580
Cow position: chr17:2583756-2583484 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 192
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 63, 32

Conread position: 329-581
Cow position: chr17:34000025-34000289 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 200
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 40, 112

Conread position: 330-536
Cow position: chr17:8067899-8068108 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 147
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 40, 18

Conread position: 330-580
Cow position: chr17:4085411-4085159 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 49

Conread position: 330-580
Cow position: chr17:13674144-13674390 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 189
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 40, 111

Conread position: 332-555
Cow position: chr17:43145021-43145246 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 155
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 20, 177

Conread position: 336-580
Cow position: chr17:1311421-1311670 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 55, 158

Conread position: 337-580
Cow position: chr17:138943-138700 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 172
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 33, 125

Conread position: 340-532
Cow position: chr17:39629645-39629846 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 156
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 22, 14

Conread position: 340-580
Cow position: chr17:29950550-29950307 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 180
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 30, 196

Conread position: 341-581
Cow position: chr17:21304626-21304379 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 182
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 29, 0

Conread position: 345-581
Cow position: chr17:29897968-29897733 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 182
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 114, 26

Conread position: 361-580
Cow position: chr17:16896545-16896773 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 9, 18

Conread position: 381-581
Cow position: chr17:10270063-10270262 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 150
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 80, 0

Conread position: 390-575
Cow position: chr17:44865027-44865214 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 134
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 55, 176

Conread position: 392-581
Cow position: chr17:14871968-14871774 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 62, 143

Conread position: 400-568
Cow position: chr17:11337892-11338061 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 133
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 36, 49

Show alignments to all cow chromosomes.