Cow genome map

Conread name: rcbl0_015095.y1

Conread position: 3-568
Cow position: chr18:28929535-28930105 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 162

Conread position: 3-574
Cow position: chr18:54033605-54033029 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 144

Conread position: 3-580
Cow position: chr18:5536881-5536287 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 145

Conread position: 3-580
Cow position: chr18:16094786-16094200 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 24

Conread position: 3-580
Cow position: chr18:17324283-17323695 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 138

Conread position: 3-580
Cow position: chr18:23802930-23802338 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 144

Conread position: 3-580
Cow position: chr18:27990667-27990072 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 144

Conread position: 3-580
Cow position: chr18:33851448-33850845 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 152

Conread position: 3-580
Cow position: chr18:36512537-36511949 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 144

Conread position: 3-581
Cow position: chr18:17334837-17335426 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 62

Conread position: 3-581
Cow position: chr18:22790504-22791109 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 153

Conread position: 3-581
Cow position: chr18:23658996-23659580 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 117

Conread position: 3-581
Cow position: chr18:33407201-33406622 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 153

Conread position: 3-581
Cow position: chr18:36649285-36648719 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 169

Conread position: 3-581
Cow position: chr18:36770629-36771218 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 149

Conread position: 5-581
Cow position: chr18:11779228-11778653 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 61

Conread position: 9-512
Cow position: chr18:26306169-26305656 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-577
Cow position: chr18:36121954-36122544 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 7

Conread position: 9-578
Cow position: chr18:33272503-33271953 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 34

Conread position: 9-578
Cow position: chr18:40484900-40484317 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 137

Conread position: 9-580
Cow position: chr18:3190648-3190059 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-580
Cow position: chr18:13270806-13270225 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-580
Cow position: chr18:17944421-17943827 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 351

Conread position: 9-580
Cow position: chr18:19356427-19355828 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 154

Conread position: 9-580
Cow position: chr18:19462184-19461595 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-580
Cow position: chr18:27540326-27539747 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 138

Conread position: 9-580
Cow position: chr18:29072320-29071736 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 136

Conread position: 9-580
Cow position: chr18:29079641-29079052 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 137

Conread position: 9-580
Cow position: chr18:30844003-30844589 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 64

Conread position: 9-580
Cow position: chr18:31139653-31139067 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-580
Cow position: chr18:37733595-37733004 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 143

Conread position: 9-580
Cow position: chr18:40196015-40195427 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-580
Cow position: chr18:41238429-41237853 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 122

Conread position: 9-580
Cow position: chr18:43473490-43472913 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-580
Cow position: chr18:45979261-45978697 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 72

Conread position: 9-580
Cow position: chr18:47745643-47745068 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 43

Conread position: 9-580
Cow position: chr18:50092544-50093129 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 9-581
Cow position: chr18:90027-89460 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 137

Conread position: 9-581
Cow position: chr18:30876374-30876951 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 60

Conread position: 9-581
Cow position: chr18:42080116-42080705 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 144

Conread position: 9-581
Cow position: chr18:43463867-43464458 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 115

Conread position: 10-503
Cow position: chr18:51578604-51579117 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 337
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 38, 65

Conread position: 11-429
Cow position: chr18:28530552-28530983 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 290
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 40, 146

Conread position: 12-449
Cow position: chr18:27799978-27800430 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 84

Conread position: 12-580
Cow position: chr18:33608133-33607550 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 130

Conread position: 12-581
Cow position: chr18:42242439-42243029 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 144

Conread position: 13-580
Cow position: chr18:14419877-14419292 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 11

Conread position: 13-581
Cow position: chr18:12270052-12269467 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 21

Conread position: 13-581
Cow position: chr18:29797184-29797771 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 111

Conread position: 15-542
Cow position: chr18:39002250-39002771 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 30

Conread position: 18-532
Cow position: chr18:12249578-12249047 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 332
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 29, 58

Conread position: 26-580
Cow position: chr18:30607583-30607011 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 121

Conread position: 29-581
Cow position: chr18:16471335-16471864 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 95

Conread position: 30-580
Cow position: chr18:26335278-26335842 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 125

Conread position: 33-431
Cow position: chr18:51679346-51679739 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 115

Conread position: 33-575
Cow position: chr18:20151475-20150929 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 150

Conread position: 38-564
Cow position: chr18:39494643-39494120 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 124

Conread position: 53-581
Cow position: chr18:6103561-6104087 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 93

Conread position: 88-580
Cow position: chr18:19310972-19310482 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 58

Conread position: 91-569
Cow position: chr18:52698443-52697957 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 320
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 118, 55

Conread position: 99-456
Cow position: chr18:6425210-6425542 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 253
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 271, 14

Conread position: 149-581
Cow position: chr18:47985633-47985206 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 308
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 14, 129

Conread position: 207-502
Cow position: chr18:36477478-36477174 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 74

Conread position: 207-580
Cow position: chr18:37692591-37692972 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 136

Conread position: 211-406
Cow position: chr18:28767562-28767371 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 140
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 46, 119

Conread position: 211-459
Cow position: chr18:15324378-15324628 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 176
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 96, 127

Conread position: 211-509
Cow position: chr18:15911806-15911504 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 118

Conread position: 211-568
Cow position: chr18:1022339-1022695 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 104

Conread position: 211-581
Cow position: chr18:15172520-15172165 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 267
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 112, 25

Conread position: 212-581
Cow position: chr18:44261744-44261382 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 44

Conread position: 215-542
Cow position: chr18:31996618-31996287 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 107

Conread position: 217-578
Cow position: chr18:35296818-35296468 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 246
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 153, 15

Conread position: 217-581
Cow position: chr18:36457949-36457569 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 258
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 90, 133

Conread position: 218-576
Cow position: chr18:46869823-46869475 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 99

Conread position: 218-580
Cow position: chr18:11870169-11869802 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 111

Conread position: 218-581
Cow position: chr18:54463187-54462847 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 246
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 81, 37

Conread position: 231-580
Cow position: chr18:23688841-23688487 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 98

Conread position: 232-577
Cow position: chr18:53872546-53872211 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 70

Conread position: 251-581
Cow position: chr18:16025005-16025344 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 288

Conread position: 259-476
Cow position: chr18:31563835-31564052 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 167
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 110, 68

Conread position: 306-579
Cow position: chr18:7930998-7931262 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 193
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 63, 24

Conread position: 311-581
Cow position: chr18:28084635-28084361 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 199
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 59, 11

Conread position: 313-581
Cow position: chr18:36776867-36776590 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 196
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 11, 226

Conread position: 321-542
Cow position: chr18:37492372-37492145 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 160
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 17, 0

Conread position: 330-580
Cow position: chr18:6866799-6866542 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 180
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 12, 207

Conread position: 330-580
Cow position: chr18:32164359-32164616 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 189
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 12, 0

Conread position: 336-532
Cow position: chr18:51610548-51610344 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 150
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 33, 0

Conread position: 349-568
Cow position: chr18:48240883-48240676 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 158
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 46, 20

Conread position: 355-581
Cow position: chr18:10890294-10890072 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 156
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 15, 59

Conread position: 375-532
Cow position: chr18:6466010-6466170 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 67, 0

Show alignments to all cow chromosomes.