• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
rcbl0_018126.y1
        

               
Conread position:
               
1-178
               

               
Cow position:
               
chr11:81174724-81174909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
37, 168
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr11:10076600-10076803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr11:8339571-8339369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
96, 65
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr11:48042205-48041994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr11:18244104-18243890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 179
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr11:63518844-63519053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
32, 65
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr11:85723534-85723756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr11:51756150-51756360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
37, 82
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr11:81300775-81300557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
29, 45
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr11:33349864-33349636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
37, 128
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr11:34616102-34616324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
34, 108
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr11:43524455-43524673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
94, 42
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr11:13592571-13592803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
37, 57
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr11:18341201-18340973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
95, 35
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr11:49231711-49231941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 55
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr11:41176115-41175880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr11:32693637-32693414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
34, 129
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr11:15772885-15772638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
38, 173
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr11:5031940-5031699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
37, 178
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr11:65826904-65826674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
93, 19
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr11:8840903-8840668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
67, 105
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr11:7394976-7395209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
34, 177
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr11:58990344-58990572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
37, 63
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr11:82940787-82940543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
37, 63
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr11:31417267-31417503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
111, 35
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr11:9221889-9221646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
94, 54
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr11:32595304-32595543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
45, 36
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr11:35363332-35363567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
39, 118
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr11:7415010-7414789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr11:11232620-11232369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
94, 189
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr11:17321495-17321737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 110
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr11:60470344-60470112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
33, 51
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr11:62155459-62155725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr11:87155352-87155606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
41, 176
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:1362643-1362380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:3282886-3283111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:4207147-4207398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
75, 234
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:8545178-8544930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
37, 53
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:8988393-8988144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
80, 37
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:13043311-13043058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
31, 118
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:15373686-15373927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
37, 85
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:17831384-17831134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
93, 37
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:19247361-19247112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
37, 19
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:22978030-22977787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
91, 240
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:23138227-23137966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
38, 169
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:26483548-26483793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
41, 172
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:30639111-30638862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:30879517-30879755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 137
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:30934258-30934504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
41, 148
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:34145079-34144837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
93, 37
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:36112256-36112507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
54, 175
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:38334352-38334611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
42, 122
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:40479020-40478765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:42044153-42043909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
37, 45
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:45631927-45631678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
98, 162
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:48474537-48474791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:48649814-48650060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:49934906-49934643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:58102937-58102674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
37, 217
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:61958912-61958657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
42, 238
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:63482592-63482342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
37, 174
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:65607856-65607601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:66188486-66188230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
61, 246
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:67804586-67804830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
31, 217
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:70086159-70086420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 219
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:76606518-76606760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
95, 35
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:77758923-77758673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
31, 25
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:84385803-84385551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
37, 172
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr11:7590028-7590277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 180
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr11:17227811-17227555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 183
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr11:23586472-23586728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr11:31227824-31228052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr11:36647198-36647433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr11:41809640-41809403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
37, 68
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr11:43430616-43430366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
69, 37
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr11:63469714-63469965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
79, 19
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr11:77745421-77745162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
37, 19
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr11:11125497-11125753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 246
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr11:55333746-55334004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr11:21507852-21508105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 19
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr11:32436166-32436433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
31, 220
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr11:62225821-62226089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
115, 91
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr11:34032368-34032096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
41, 191
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr11:58400097-58400354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
70, 50
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr11:39118593-39118907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
91, 23
               

               
Conread position:
               
2-193
               

               
Cow position:
               
chr11:2811893-2811690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
94, 64
               

               
Conread position:
               
2-235
               

               
Cow position:
               
chr11:81406323-81406086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
127, 115
               

               
Conread position:
               
2-241
               

               
Cow position:
               
chr11:13499848-13500103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
19, 162
               

               
Conread position:
               
2-241
               

               
Cow position:
               
chr11:16907207-16906963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 36
               

               
Conread position:
               
2-241
               

               
Cow position:
               
chr11:33348350-33348100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
36, 135
               

               
Conread position:
               
2-243
               

               
Cow position:
               
chr11:2917750-2917497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
91, 231
               

               
Conread position:
               
2-243
               

               
Cow position:
               
chr11:39499194-39499447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
80, 53
               

               
Conread position:
               
2-243
               

               
Cow position:
               
chr11:51729124-51729376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 72
               

               
Conread position:
               
2-245
               

               
Cow position:
               
chr11:6245157-6245406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
33, 177
               

               
Conread position:
               
3-93
               

               
Cow position:
               
chr11:63516663-63516753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
91
               

               
Alignm identity:
               
77
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-167
               

               
Cow position:
               
chr11:25165279-25165441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
90, 114
               

               
Conread position:
               
3-214
               

               
Cow position:
               
chr11:44818936-44819154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chr11:38874567-38874339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
3-218
               

               
Cow position:
               
chr11:10302356-10302138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
35, 121
               

               
Conread position:
               
3-223
               

               
Cow position:
               
chr11:2092176-2092404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
69, 157
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr11:30912153-30911933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
79, 111
               

               
Conread position:
               
3-225
               

               
Cow position:
               
chr11:67747121-67747356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
70, 134
               

               
Conread position:
               
3-232
               

               
Cow position:
               
chr11:4663209-4662968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
94, 152
               

               
Conread position:
               
3-233
               

               
Cow position:
               
chr11:11469798-11469568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
103, 25
               

               
Conread position:
               
3-233
               

               
Cow position:
               
chr11:44642450-44642212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
91, 197
               

               
Conread position:
               
3-233
               

               
Cow position:
               
chr11:63909821-63909587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
31, 114
               

               
Conread position:
               
3-236
               

               
Cow position:
               
chr11:36981401-36981645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
35, 229
               

               
Conread position:
               
3-240
               

               
Cow position:
               
chr11:8525274-8525028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
92, 193
               

               
Conread position:
               
3-240
               

               
Cow position:
               
chr11:50778210-50778454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
92, 138
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr11:2083973-2084231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr11:3233920-3234163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr11:18509182-18508943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
29, 94
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr11:30924986-30925242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
35, 234
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr11:36799466-36799220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
35, 229
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr11:53778451-53778704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr11:54334171-54334416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
39, 15
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr11:65495497-65495252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
17, 146
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr11:71493021-71492774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 161
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr11:73354218-73353972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr11:76889885-76890133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr11:80530202-80530446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
30, 172
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr11:85294083-85294329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
102, 74
               

               
Conread position:
               
3-242
               

               
Cow position:
               
chr11:69119139-69119382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr11:41020-41269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
80, 52
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr11:2907682-2907439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
90, 175
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr11:2925451-2925211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
90, 69
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr11:3393372-3393120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
86, 17
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr11:17660931-17661173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
90, 121
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr11:20761683-20761932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
48, 197
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr11:25386900-25387158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr11:28643917-28644177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr11:29960142-29960385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
39, 63
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr11:30954835-30955090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr11:34467434-34467656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr11:35874155-35873913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 105
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr11:43897977-43898228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
78, 54
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr11:44234190-44234445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
92, 47
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr11:48272034-48272290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr11:48295869-48296120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
53, 178
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr11:49210980-49210733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
51, 79
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr11:50152979-50152724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr11:59702323-59702580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr11:68207002-68206752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
73, 138
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr11:76114491-76114732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 208
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr11:77319249-77319504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chr11:11558004-11558262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chr11:27746761-27747014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chr11:33287116-33286867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
32, 226
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chr11:34646428-34646680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
40, 54
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chr11:62239583-62239835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
75, 143
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chr11:73924723-73924471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
92, 51
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chr11:83043527-83043272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
3-245
               

               
Cow position:
               
chr11:80923487-80923232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
90, 188
               

               
Conread position:
               
3-246
               

               
Cow position:
               
chr11:21438052-21438301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
3-246
               

               
Cow position:
               
chr11:45898216-45897957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
3-246
               

               
Cow position:
               
chr11:66425051-66424789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
42, 233
               

               
Conread position:
               
3-251
               

               
Cow position:
               
chr11:47899116-47899367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 106
               

               
Conread position:
               
3-252
               

               
Cow position:
               
chr11:74316549-74316807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
92, 237
               

               
Conread position:
               
3-253
               

               
Cow position:
               
chr11:1625381-1625125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
79, 227
               

               
Conread position:
               
3-253
               

               
Cow position:
               
chr11:27405229-27404975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
65, 176
               

               
Conread position:
               
3-253
               

               
Cow position:
               
chr11:47544967-47545231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
93, 184
               

               
Conread position:
               
3-253
               

               
Cow position:
               
chr11:75874915-75874655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 240
               

               
Conread position:
               
3-254
               

               
Cow position:
               
chr11:33341309-33341044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
90, 28
               

               
Conread position:
               
3-255
               

               
Cow position:
               
chr11:65157575-65157307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
53, 262
               

               
Conread position:
               
3-255
               

               
Cow position:
               
chr11:67600619-67600887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
3-255
               

               
Cow position:
               
chr11:77546254-77546517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
32, 62
               

               
Conread position:
               
3-258
               

               
Cow position:
               
chr11:1849325-1849072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
53, 94
               

               
Conread position:
               
3-258
               

               
Cow position:
               
chr11:52297384-52297117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
92, 145
               

               
Conread position:
               
3-260
               

               
Cow position:
               
chr11:17083461-17083204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
76, 61
               

               
Conread position:
               
3-263
               

               
Cow position:
               
chr11:24601810-24602081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
3-263
               

               
Cow position:
               
chr11:43360951-43360674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
32, 171
               

               
Conread position:
               
3-263
               

               
Cow position:
               
chr11:71008972-71009230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
29, 115
               

               
Conread position:
               
3-275
               

               
Cow position:
               
chr11:22499512-22499245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
111, 38
               

               
Conread position:
               
4-152
               

               
Cow position:
               
chr11:47165302-47165142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
4-176
               

               
Cow position:
               
chr11:73478457-73478631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
93, 108
               

               
Conread position:
               
4-190
               

               
Cow position:
               
chr11:27386508-27386302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
4-190
               

               
Cow position:
               
chr11:36113995-36114193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
4-191
               

               
Cow position:
               
chr11:67207578-67207767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
4-222
               

               
Cow position:
               
chr11:70273138-70273375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
4-223
               

               
Cow position:
               
chr11:17493316-17493553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
4-233
               

               
Cow position:
               
chr11:64638696-64638446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
28, 183
               

               
Conread position:
               
4-233
               

               
Cow position:
               
chr11:73512594-73512363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
34, 81
               

               
Conread position:
               
4-235
               

               
Cow position:
               
chr11:68905236-68904995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
89, 38
               

               
Conread position:
               
4-239
               

               
Cow position:
               
chr11:259335-259086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
4-240
               

               
Cow position:
               
chr11:23128704-23128453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
89, 5
               

               
Conread position:
               
4-241
               

               
Cow position:
               
chr11:6234042-6233792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
28, 43
               

               
Conread position:
               
4-241
               

               
Cow position:
               
chr11:9270890-9270639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
34, 173
               

               
Conread position:
               
4-241
               

               
Cow position:
               
chr11:16233098-16232847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
4-241
               

               
Cow position:
               
chr11:18572639-18572888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
94, 163
               

               
Conread position:
               
4-241
               

               
Cow position:
               
chr11:41215579-41215820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
4-241
               

               
Cow position:
               
chr11:42083315-42083556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
31, 114
               

               
Conread position:
               
4-241
               

               
Cow position:
               
chr11:42358957-42359207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
65, 35
               

               
Conread position:
               
4-242
               

               
Cow position:
               
chr11:21894316-21894076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
28, 174
               

               
Conread position:
               
4-242
               

               
Cow position:
               
chr11:34829942-34829697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
87, 20
               

               
Conread position:
               
4-242
               

               
Cow position:
               
chr11:42296780-42296531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
4-243
               

               
Cow position:
               
chr11:30354907-30355148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
28, 123
               

               
Conread position:
               
4-243
               

               
Cow position:
               
chr11:35684657-35684411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
4-243
               

               
Cow position:
               
chr11:38577936-38577689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
28, 183
               

               
Conread position:
               
4-243
               

               
Cow position:
               
chr11:46746466-46746727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
74, 53
               

               
Conread position:
               
4-243
               

               
Cow position:
               
chr11:62620221-62620466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
4-243
               

               
Cow position:
               
chr11:83066332-83066577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
4-243
               

               
Cow position:
               
chr11:83230553-83230311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 152
               

               
Conread position:
               
4-244
               

               
Cow position:
               
chr11:77128497-77128751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
80, 35
               

               
Conread position:
               
4-245
               

               
Cow position:
               
chr11:77118546-77118789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
34, 163
               

               
Conread position:
               
4-247
               

               
Cow position:
               
chr11:20238509-20238770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
4-252
               

               
Cow position:
               
chr11:44036556-44036817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
62, 166
               

               
Conread position:
               
4-254
               

               
Cow position:
               
chr11:8148059-8147798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
74, 47
               

               
Conread position:
               
4-255
               

               
Cow position:
               
chr11:21728431-21728179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
78, 172
               

               
Conread position:
               
4-256
               

               
Cow position:
               
chr11:58588185-58588447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
73, 114
               

               
Conread position:
               
4-260
               

               
Cow position:
               
chr11:18698715-18698987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
5-190
               

               
Cow position:
               
chr11:65430899-65431091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
99, 15
               

               
Conread position:
               
5-218
               

               
Cow position:
               
chr11:66289398-66289616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
27, 118
               

               
Conread position:
               
5-219
               

               
Cow position:
               
chr11:8495878-8496098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
34, 119
               

               
Conread position:
               
5-220
               

               
Cow position:
               
chr11:17889888-17889662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
5-232
               

               
Cow position:
               
chr11:55761718-55761947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
92, 34
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chr11:84795891-84795668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
104, 53
               

               
Conread position:
               
5-240
               

               
Cow position:
               
chr11:56518471-56518225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
17, 161
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr11:3833513-3833276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
112, 23
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr11:33526903-33527140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
34, 101
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr11:41986206-41985958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
32, 61
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr11:66572663-66572410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
33, 179
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chr11:10992119-10992356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
8, 91
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chr11:14470208-14470455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
24, 119
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chr11:18086501-18086258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
33, 173
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chr11:30830777-30830524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chr11:70836531-70836287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
70, 13
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chr11:77705599-77705840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
89, 28
               

               
Conread position:
               
5-244
               

               
Cow position:
               
chr11:27248331-27248581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
90, 184
               

               
Conread position:
               
5-245
               

               
Cow position:
               
chr11:45646756-45646501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
84, 193
               

               
Conread position:
               
5-252
               

               
Cow position:
               
chr11:5306-5561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
88, 16
               

               
Conread position:
               
5-260
               

               
Cow position:
               
chr11:64090245-64089990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 93
               

               
Conread position:
               
6-221
               

               
Cow position:
               
chr11:65409315-65409086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
79, 169
               

               
Conread position:
               
6-233
               

               
Cow position:
               
chr11:27764995-27765233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
6-233
               

               
Cow position:
               
chr11:36658978-36658743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
89, 30
               

               
Conread position:
               
6-233
               

               
Cow position:
               
chr11:48544276-48544521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
6-240
               

               
Cow position:
               
chr11:26067344-26067097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 231
               

               
Conread position:
               
6-241
               

               
Cow position:
               
chr11:20602067-20602314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
27, 207
               

               
Conread position:
               
6-243
               

               
Cow position:
               
chr11:59872771-59873018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
88, 167
               

               
Conread position:
               
6-254
               

               
Cow position:
               
chr11:45434926-45435181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
6-260
               

               
Cow position:
               
chr11:49148876-49149157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
6-260
               

               
Cow position:
               
chr11:61427446-61427696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
93, 197
               

               
Conread position:
               
7-241
               

               
Cow position:
               
chr11:36238624-36238865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
86, 173
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr11:21844292-21844049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
85, 149
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr11:55052727-55052961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
107, 49
               

               
Conread position:
               
7-257
               

               
Cow position:
               
chr11:3175531-3175773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
119, 65
               

               
Conread position:
               
7-258
               

               
Cow position:
               
chr11:70600980-70600728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
31, 90
               

               
Conread position:
               
7-260
               

               
Cow position:
               
chr11:33754064-33753807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
25, 165
               

               
Conread position:
               
7-260
               

               
Cow position:
               
chr11:81138064-81138313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
105, 88
               

               
Conread position:
               
7-263
               

               
Cow position:
               
chr11:71390723-71390453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
86, 209
               

               
Conread position:
               
8-243
               

               
Cow position:
               
chr11:26845740-26845505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
55, 100
               

               
Conread position:
               
8-244
               

               
Cow position:
               
chr11:52983517-52983765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
9, 244
               

               
Conread position:
               
8-254
               

               
Cow position:
               
chr11:64334699-64334937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
154, 74
               

               
Conread position:
               
8-256
               

               
Cow position:
               
chr11:13061388-13061133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
83, 100
               

               
Conread position:
               
8-260
               

               
Cow position:
               
chr11:6202288-6202546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
87, 234
               

               
Conread position:
               
9-173
               

               
Cow position:
               
chr11:18389019-18388853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
69, 79
               

               
Conread position:
               
9-217
               

               
Cow position:
               
chr11:83687588-83687370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 111
               

               
Conread position:
               
9-233
               

               
Cow position:
               
chr11:82108050-82107822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
46, 141
               

               
Conread position:
               
9-235
               

               
Cow position:
               
chr11:63847692-63847928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
88, 32
               

               
Conread position:
               
9-240
               

               
Cow position:
               
chr11:50072793-50073024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
89, 53
               

               
Conread position:
               
9-241
               

               
Cow position:
               
chr11:40458952-40459196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
24, 67
               

               
Conread position:
               
9-241
               

               
Cow position:
               
chr11:78381212-78380977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
29, 49
               

               
Conread position:
               
9-243
               

               
Cow position:
               
chr11:13075948-13075722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
74, 37
               

               
Conread position:
               
9-243
               

               
Cow position:
               
chr11:55494522-55494769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
9-243
               

               
Cow position:
               
chr11:62151042-62150804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
75, 48
               

               
Conread position:
               
9-248
               

               
Cow position:
               
chr11:80820156-80819910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
81, 177
               

               
Conread position:
               
9-252
               

               
Cow position:
               
chr11:48496744-48496494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
73, 11
               

               
Conread position:
               
9-255
               

               
Cow position:
               
chr11:28993889-28993637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
88, 210
               

               
Conread position:
               
9-256
               

               
Cow position:
               
chr11:39115336-39115599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
86, 184
               

               
Conread position:
               
9-256
               

               
Cow position:
               
chr11:63434213-63433955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
88, 216
               

               
Conread position:
               
9-257
               

               
Cow position:
               
chr11:53553079-53553319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
72, 88
               

               
Conread position:
               
10-241
               

               
Cow position:
               
chr11:49152795-49153036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
23, 54
               

               
Conread position:
               
10-243
               

               
Cow position:
               
chr11:38638964-38639201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
83, 11
               

               
Conread position:
               
10-243
               

               
Cow position:
               
chr11:44222734-44222975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
73, 59
               

               
Conread position:
               
11-178
               

               
Cow position:
               
chr11:86926083-86925916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
27, 130
               

               
Conread position:
               
11-239
               

               
Cow position:
               
chr11:5201805-5201566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
11-243
               

               
Cow position:
               
chr11:35213316-35213078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
45, 24
               

               
Conread position:
               
12-243
               

               
Cow position:
               
chr11:70278263-70278023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
23, 131
               

               
Conread position:
               
14-233
               

               
Cow position:
               
chr11:71806296-71806071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
81, 107
               

               
Conread position:
               
16-221
               

               
Cow position:
               
chr11:40258562-40258344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
22, 156
               

               
Conread position:
               
16-243
               

               
Cow position:
               
chr11:18851768-18851997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 184
               

               
Conread position:
               
16-243
               

               
Cow position:
               
chr11:70250775-70251008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
53, 69
               

               
Conread position:
               
17-223
               

               
Cow position:
               
chr11:6633562-6633780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
17-241
               

               
Cow position:
               
chr11:86720561-86720330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
80, 47
               

               
Conread position:
               
18-243
               

               
Cow position:
               
chr11:23407313-23407554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
20-241
               

               
Cow position:
               
chr11:67246646-67246873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
75, 118
               

               
Conread position:
               
20-243
               

               
Cow position:
               
chr11:40573479-40573246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
79, 154
               

               
Conread position:
               
21-241
               

               
Cow position:
               
chr11:261403-261180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
22-244
               

               
Cow position:
               
chr11:69075764-69076001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
71, 145
               

               
Conread position:
               
27-243
               

               
Cow position:
               
chr11:67615382-67615157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
34, 118
               

               
Conread position:
               
28-241
               

               
Cow position:
               
chr11:52690661-52690434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
10, 164
               

               
Conread position:
               
28-243
               

               
Cow position:
               
chr11:70206184-70206408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
10, 36
               

               
Conread position:
               
31-241
               

               
Cow position:
               
chr11:39462494-39462711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
31-241
               

               
Cow position:
               
chr11:55744343-55744555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
69, 8
               

               
Conread position:
               
31-245
               

               
Cow position:
               
chr11:68913007-68913232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
31-261
               

               
Cow position:
               
chr11:46952814-46953055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
37-233
               

               
Cow position:
               
chr11:64868144-64867941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
37-240
               

               
Cow position:
               
chr11:59024483-59024274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
58, 88
               

               
Conread position:
               
41-213
               

               
Cow position:
               
chr11:42003069-42002888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
54, 110
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr11:35791937-35791757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
41-241
               

               
Cow position:
               
chr11:18785977-18785790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 10
               

               
Conread position:
               
41-269
               

               
Cow position:
               
chr11:12804404-12804184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
47-213
               

               
Cow position:
               
chr11:46592366-46592525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
56, 16
               

               
Conread position:
               
47-243
               

               
Cow position:
               
chr11:44031902-44032101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
21, 35
               

               
Conread position:
               
48-261
               

               
Cow position:
               
chr11:372813-372601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
49, 34
               

               
Conread position:
               
51-243
               

               
Cow position:
               
chr11:39060716-39060513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
31, 171
               

               
Conread position:
               
54-244
               

               
Cow position:
               
chr11:32691070-32690880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
28, 21
               

               
Conread position:
               
55-300
               

               
Cow position:
               
chr11:47004248-47004496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
57, 161
               

               
Conread position:
               
57-241
               

               
Cow position:
               
chr11:4653073-4652885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
58-241
               

               
Cow position:
               
chr11:31885621-31885810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
31, 53
               

               
Conread position:
               
59-223
               

               
Cow position:
               
chr11:75965757-75965582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
61-223
               

               
Cow position:
               
chr11:19946344-19946505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
62-240
               

               
Cow position:
               
chr11:6194115-6194293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
172, 14
               

               
Conread position:
               
62-240
               

               
Cow position:
               
chr11:41603780-41603600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
14, 155
               

               
Conread position:
               
62-241
               

               
Cow position:
               
chr11:48306436-48306259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
63-205
               

               
Cow position:
               
chr11:66518400-66518543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 48
               

               
Conread position:
               
64-241
               

               
Cow position:
               
chr11:80413114-80412926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
33, 109
               

               
Conread position:
               
66-241
               

               
Cow position:
               
chr11:84977438-84977270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
151, 32
               

               
Conread position:
               
75-240
               

               
Cow position:
               
chr11:35926983-35926823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
75-241
               

               
Cow position:
               
chr11:32398560-32398723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
75-241
               

               
Cow position:
               
chr11:33345367-33345533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
27, 35
               

               
Conread position:
               
75-244
               

               
Cow position:
               
chr11:42066782-42066955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 66
               

               
Conread position:
               
75-255
               

               
Cow position:
               
chr11:84890797-84890615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
39, 124
               

               
Conread position:
               
75-258
               

               
Cow position:
               
chr11:41313733-41313554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
77-241
               

               
Cow position:
               
chr11:30888359-30888192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
121, 84
               

               
Conread position:
               
77-244
               

               
Cow position:
               
chr11:1932568-1932399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
78-235
               

               
Cow position:
               
chr11:71935030-71934875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
12, 30
               

               
Conread position:
               
84-243
               

               
Cow position:
               
chr11:48512097-48512253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
87-260
               

               
Cow position:
               
chr11:27722326-27722496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
42, 53
               

               
Conread position:
               
89-241
               

               
Cow position:
               
chr11:3739889-3740041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
89-242
               

               
Cow position:
               
chr11:16843047-16842899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
89-257
               

               
Cow position:
               
chr11:48248280-48248114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
160, 0
               

               
Conread position:
               
89-263
               

               
Cow position:
               
chr11:27565272-27565441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
146, 14
               

               
Conread position:
               
90-223
               

               
Cow position:
               
chr11:53510563-53510433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
90-230
               

               
Cow position:
               
chr11:71482317-71482456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
90-233
               

               
Cow position:
               
chr11:56821312-56821163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
90-240
               

               
Cow position:
               
chr11:30483855-30484006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
90-241
               

               
Cow position:
               
chr11:12111515-12111371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
90-241
               

               
Cow position:
               
chr11:36920641-36920487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
90-241
               

               
Cow position:
               
chr11:47837256-47837407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
12, 57
               

               
Conread position:
               
90-241
               

               
Cow position:
               
chr11:65767136-65767287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
90-241
               

               
Cow position:
               
chr11:67912214-67912064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
146, 95
               

               
Conread position:
               
90-241
               

               
Cow position:
               
chr11:83033298-83033152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
90-242
               

               
Cow position:
               
chr11:3790773-3790931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
90-243
               

               
Cow position:
               
chr11:249546-249392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
90-243
               

               
Cow position:
               
chr11:375395-375549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
16, 99
               

               
Conread position:
               
90-243
               

               
Cow position:
               
chr11:14466550-14466397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
90-243
               

               
Cow position:
               
chr11:40608658-40608505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
6, 88
               

               
Conread position:
               
90-243
               

               
Cow position:
               
chr11:63999151-63999002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
90-243
               

               
Cow position:
               
chr11:79019122-79018969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
90-244
               

               
Cow position:
               
chr11:41293879-41293727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
90-245
               

               
Cow position:
               
chr11:31875029-31875182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
31, 50
               

               
Conread position:
               
90-247
               

               
Cow position:
               
chr11:35803072-35803230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
10, 20
               

               
Conread position:
               
90-253
               

               
Cow position:
               
chr11:19586393-19586559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
90-262
               

               
Cow position:
               
chr11:16342292-16342120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
91-229
               

               
Cow position:
               
chr11:31506785-31506925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
91-240
               

               
Cow position:
               
chr11:64406167-64406315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
91-243
               

               
Cow position:
               
chr11:18914962-18915116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
92-240
               

               
Cow position:
               
chr11:8428450-8428598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
23, 29
               

               
Conread position:
               
92-243
               

               
Cow position:
               
chr11:17036590-17036438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
22, 13
               

               
Conread position:
               
92-243
               

               
Cow position:
               
chr11:17676431-17676283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
92-243
               

               
Cow position:
               
chr11:22747390-22747241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
14, 71
               

               
Conread position:
               
92-244
               

               
Cow position:
               
chr11:69307451-69307604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
92-253
               

               
Cow position:
               
chr11:83032621-83032781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
153, 17
               

               
Conread position:
               
92-255
               

               
Cow position:
               
chr11:29699762-29699598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
15, 63
               

               
Conread position:
               
93-218
               

               
Cow position:
               
chr11:41438246-41438122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
34, 10
               

               
Conread position:
               
93-240
               

               
Cow position:
               
chr11:69652841-69652695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
50, 84
               

               
Conread position:
               
93-241
               

               
Cow position:
               
chr11:56734569-56734717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
7, 69
               

               
Conread position:
               
93-243
               

               
Cow position:
               
chr11:24599450-24599299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
31, 112
               

               
Conread position:
               
93-243
               

               
Cow position:
               
chr11:80564233-80564382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
94-227
               

               
Cow position:
               
chr11:8584268-8584399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
94-230
               

               
Cow position:
               
chr11:55203517-55203383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
94-240
               

               
Cow position:
               
chr11:53279771-53279628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
94-241
               

               
Cow position:
               
chr11:61454573-61454429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
94-243
               

               
Cow position:
               
chr11:11523518-11523366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
43, 86
               

               
Conread position:
               
94-244
               

               
Cow position:
               
chr11:29659502-29659650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
95-241
               

               
Cow position:
               
chr11:8669953-8670103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
70, 20
               

               
Conread position:
               
95-243
               

               
Cow position:
               
chr11:48085857-48086010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
95-246
               

               
Cow position:
               
chr11:34573490-34573342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
32, 22
               

               
Conread position:
               
96-241
               

               
Cow position:
               
chr11:39855072-39854930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
10, 66
               

               
Conread position:
               
96-243
               

               
Cow position:
               
chr11:30867125-30867273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
97-255
               

               
Cow position:
               
chr11:18608294-18608134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
98-227
               

               
Cow position:
               
chr11:48659879-48660008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
98-241
               

               
Cow position:
               
chr11:62754374-62754230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
100-240
               

               
Cow position:
               
chr11:27913232-27913371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
100-243
               

               
Cow position:
               
chr11:18447545-18447402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
100-264
               

               
Cow position:
               
chr11:67614977-67614812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
13, 158
               

               
Conread position:
               
101-243
               

               
Cow position:
               
chr11:63687671-63687530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
101-244
               

               
Cow position:
               
chr11:62789078-62789221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
104-241
               

               
Cow position:
               
chr11:15382552-15382415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
104-243
               

               
Cow position:
               
chr11:28168471-28168333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
104-243
               

               
Cow position:
               
chr11:30172261-30172394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
104-244
               

               
Cow position:
               
chr11:47882754-47882894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
105-230
               

               
Cow position:
               
chr11:34106718-34106593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
105-235
               

               
Cow position:
               
chr11:43914245-43914372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
105-242
               

               
Cow position:
               
chr11:80639598-80639458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
105-243
               

               
Cow position:
               
chr11:19606529-19606667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
105-243
               

               
Cow position:
               
chr11:33409310-33409172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
105-255
               

               
Cow position:
               
chr11:17721850-17721700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
106-243
               

               
Cow position:
               
chr11:63866706-63866569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
109, 40
               

               
Conread position:
               
108-241
               

               
Cow position:
               
chr11:29786545-29786411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
108-241
               

               
Cow position:
               
chr11:62889939-62889806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
108-265
               

               
Cow position:
               
chr11:56654510-56654667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
148, 122
               

               
Conread position:
               
109-218
               

               
Cow position:
               
chr11:65624837-65624729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
109-226
               

               
Cow position:
               
chr11:27462142-27462027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
109-238
               

               
Cow position:
               
chr11:84490539-84490415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
109-240
               

               
Cow position:
               
chr11:31352596-31352465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-241
               

               
Cow position:
               
chr11:34692809-34692941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-241
               

               
Cow position:
               
chr11:56290467-56290599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-241
               

               
Cow position:
               
chr11:61130709-61130579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
109-241
               

               
Cow position:
               
chr11:62811253-62811384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
109-243
               

               
Cow position:
               
chr11:34413384-34413250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-243
               

               
Cow position:
               
chr11:38211601-38211735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
23, 14
               

               
Conread position:
               
109-244
               

               
Cow position:
               
chr11:48063845-48063710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-254
               

               
Cow position:
               
chr11:897629-897774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
110-239
               

               
Cow position:
               
chr11:80616200-80616321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
110-241
               

               
Cow position:
               
chr11:3714782-3714908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
110-241
               

               
Cow position:
               
chr11:82731041-82730910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
110-243
               

               
Cow position:
               
chr11:58927540-58927667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
61, 71
               

               
Conread position:
               
111-240
               

               
Cow position:
               
chr11:71345366-71345237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
111-241
               

               
Cow position:
               
chr11:35669994-35669865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
111-243
               

               
Cow position:
               
chr11:46922928-46922795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
112-240
               

               
Cow position:
               
chr11:4430174-4430049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
112-243
               

               
Cow position:
               
chr11:21885792-21885922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
114-212
               

               
Cow position:
               
chr11:17946937-17946839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
120-242
               

               
Cow position:
               
chr11:3896732-3896612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
122-258
               

               
Cow position:
               
chr11:71021969-71022103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
123-243
               

               
Cow position:
               
chr11:8437724-8437604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
126-243
               

               
Cow position:
               
chr11:2900748-2900631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
126-243
               

               
Cow position:
               
chr11:17638562-17638445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
127-242
               

               
Cow position:
               
chr11:63165673-63165558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
128-243
               

               
Cow position:
               
chr11:3248731-3248617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
128-257
               

               
Cow position:
               
chr11:30895029-30894899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
129-243
               

               
Cow position:
               
chr11:84764012-84764122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
129-246
               

               
Cow position:
               
chr11:22027413-22027297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
83, 46
               

               
Conread position:
               
131-243
               

               
Cow position:
               
chr11:56114916-56115030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
138-233
               

               
Cow position:
               
chr11:47164934-47164839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
140-248
               

               
Cow position:
               
chr11:67948755-67948646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
141-243
               

               
Cow position:
               
chr11:22884401-22884502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
143-243
               

               
Cow position:
               
chr11:34238581-34238481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
153-243
               

               
Cow position:
               
chr11:25320185-25320275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
91
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
168-257
               

               
Cow position:
               
chr11:56359130-56359040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
91
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
80, 0
               
Show alignments to all cow chromosomes.