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Cow genome map

           
Conread name:
           
rcbl0_018126.y1
        

               
Conread position:
               
1-178
               

               
Cow position:
               
chr3:8717078-8717260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
34, 122
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr3:60892461-60892653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
81, 41
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr3:70631847-70632051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
91, 42
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr3:79902332-79902538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
37, 122
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr3:19708276-19708065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
37, 173
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr3:54434804-54435022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
37, 54
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr3:17957291-17957516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr3:24616008-24615795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
92, 36
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr3:81359284-81359055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr3:66610014-66609787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
94, 165
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr3:79092566-79092335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr3:30463337-30463114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
88, 44
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr3:31419529-31419750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
42, 120
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr3:73961854-73961639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 72
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr3:73759687-73759454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
92, 186
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr3:78896478-78896710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
31, 20
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr3:44101798-44102037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
37, 199
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr3:4319543-4319781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
37, 115
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr3:52418783-52419007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
40, 66
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr3:64281103-64280859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr3:3638015-3638251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
33, 171
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr3:7940727-7940484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
85, 149
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr3:18066964-18067206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
81, 174
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr3:31850541-31850303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
35, 169
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr3:51578491-51578252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
95, 38
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr3:68303161-68303388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr3:18854921-18855150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
37, 94
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr3:79148443-79148209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
37, 97
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr3:58969072-58968824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr3:66884112-66883864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 179
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr3:67544040-67543790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 234
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr3:72675921-72676171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:1830740-1830495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
67, 131
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:2506648-2506398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
32, 212
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:3556378-3556626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:5100938-5100691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:6873415-6873171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
33, 45
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:7678496-7678734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
41, 164
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:13302020-13301770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
38, 233
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:13577357-13577121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
131, 35
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:18686736-18686987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:19792721-19792986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
37, 231
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:20842027-20841792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 84
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:27940299-27940062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
42, 81
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:31309526-31309273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:34669899-34669652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
32, 149
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:38828595-38828838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
12, 218
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:43233336-43233587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:46901025-46901278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 46
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:49650214-49650469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
37, 237
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:53318232-53318481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
32, 227
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:55319074-55318818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 53
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:55712258-55712521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
37, 245
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:63269054-63269303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
94, 23
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:70401731-70401977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
91, 44
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:73394949-73395197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
32, 154
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:73708877-73709127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 68
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:74502493-74502244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr3:82056289-82056038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 170
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr3:16656648-16656394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
67, 97
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr3:67704371-67704628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr3:3738317-3738564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
92, 50
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr3:8060956-8061209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 183
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr3:26981893-26982140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
37, 235
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr3:56476509-56476765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr3:57273895-57274144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 52
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr3:59799076-59799331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr3:66292350-66292093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr3:74234025-74234269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
96, 83
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr3:75080599-75080843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
92, 67
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr3:80740397-80740645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
94, 45
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr3:5365500-5365761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr3:23471635-23471375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr3:62826790-62826535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
94, 199
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr3:59000919-59000674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
94, 44
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr3:23920601-23920344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
37, 242
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr3:83815960-83815696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
93, 25
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr3:2630623-2630870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
95, 117
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr3:27697150-27696884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
32, 222
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr3:45211126-45211395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
31, 244
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr3:49482882-49482621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
31, 126
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr3:53739357-53739085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 117
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr3:49132217-49131966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
101, 38
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr3:52863356-52863087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
33, 235
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr3:68583174-68582866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
32, 233
               

               
Conread position:
               
2-186
               

               
Cow position:
               
chr3:55106609-55106413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr3:31047121-31046899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
86, 188
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chr3:75570618-75570376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 214
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr3:28898393-28898143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
2-241
               

               
Cow position:
               
chr3:83490913-83491166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
30, 213
               

               
Conread position:
               
2-243
               

               
Cow position:
               
chr3:78946003-78945756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
92, 47
               

               
Conread position:
               
2-243
               

               
Cow position:
               
chr3:83215083-83215345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
2-252
               

               
Cow position:
               
chr3:19711482-19711250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
7, 38
               

               
Conread position:
               
3-93
               

               
Cow position:
               
chr3:35074514-35074604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
91
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr3:56301513-56301313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
89, 127
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr3:56523599-56523401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
80, 25
               

               
Conread position:
               
3-210
               

               
Cow position:
               
chr3:69750870-69750661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
92, 36
               

               
Conread position:
               
3-212
               

               
Cow position:
               
chr3:65800426-65800637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
92, 42
               

               
Conread position:
               
3-218
               

               
Cow position:
               
chr3:20129773-20129993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
35, 120
               

               
Conread position:
               
3-231
               

               
Cow position:
               
chr3:23445063-23444817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
3-232
               

               
Cow position:
               
chr3:70895881-70896120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
79, 117
               

               
Conread position:
               
3-233
               

               
Cow position:
               
chr3:45534465-45534223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
93, 63
               

               
Conread position:
               
3-234
               

               
Cow position:
               
chr3:75711142-75711380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
96, 122
               

               
Conread position:
               
3-235
               

               
Cow position:
               
chr3:57760329-57760572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
29, 239
               

               
Conread position:
               
3-240
               

               
Cow position:
               
chr3:2396948-2396709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
3-240
               

               
Cow position:
               
chr3:9641396-9641648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr3:8393181-8393426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
36, 178
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr3:14601882-14601623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr3:27109070-27108807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
92, 54
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr3:33253050-33252808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
29, 109
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr3:38863946-38864207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr3:52652244-52651999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
52, 114
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr3:53270659-53270911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr3:54740038-54739806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
32, 9
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr3:57624294-57624545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
35, 52
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr3:81471270-81471015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr3:83474577-83474826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
49, 23
               

               
Conread position:
               
3-242
               

               
Cow position:
               
chr3:6182369-6182145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
3-242
               

               
Cow position:
               
chr3:15158872-15159113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
3-242
               

               
Cow position:
               
chr3:19006494-19006739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
116, 83
               

               
Conread position:
               
3-242
               

               
Cow position:
               
chr3:22232821-22232573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
92, 163
               

               
Conread position:
               
3-242
               

               
Cow position:
               
chr3:44932343-44932595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
92, 211
               

               
Conread position:
               
3-242
               

               
Cow position:
               
chr3:74079808-74079555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
92, 196
               

               
Conread position:
               
3-242
               

               
Cow position:
               
chr3:74533183-74533431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
52, 113
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr3:116028-116273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr3:7337939-7337701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
70, 83
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr3:10347186-10347438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
93, 178
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr3:11063213-11063448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
79, 166
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr3:16752422-16752176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
81, 50
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr3:17937004-17936755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr3:20678004-20677759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 175
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr3:36418635-36418401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr3:39970037-39969779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr3:53150160-53150414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
94, 17
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr3:53221845-53222096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr3:54506540-54506790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr3:56059637-56059894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr3:57764058-57764300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 165
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr3:59208645-59208877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
92, 151
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr3:60264884-60264633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
92, 35
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr3:60265411-60265171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
67, 175
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr3:70762292-70762040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
92, 179
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr3:73443256-73443013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
90, 121
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr3:75107625-75107857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr3:78092675-78092429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
53, 222
               

               
Conread position:
               
3-243
               

               
Cow position:
               
chr3:80071957-80072212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chr3:50768513-50768763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chr3:53875928-53875681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
75, 67
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chr3:75158190-75158439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
92, 146
               

               
Conread position:
               
3-245
               

               
Cow position:
               
chr3:23169235-23168981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
76, 157
               

               
Conread position:
               
3-245
               

               
Cow position:
               
chr3:45647511-45647765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
88, 63
               

               
Conread position:
               
3-245
               

               
Cow position:
               
chr3:68627850-68627604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
65, 130
               

               
Conread position:
               
3-250
               

               
Cow position:
               
chr3:68708173-68707923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
85, 163
               

               
Conread position:
               
3-254
               

               
Cow position:
               
chr3:49327772-49328035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
92, 245
               

               
Conread position:
               
3-254
               

               
Cow position:
               
chr3:78077024-78077284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
3-257
               

               
Cow position:
               
chr3:73764365-73764104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
35, 67
               

               
Conread position:
               
3-258
               

               
Cow position:
               
chr3:26874421-26874687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
42, 15
               

               
Conread position:
               
3-261
               

               
Cow position:
               
chr3:525181-525447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
82, 129
               

               
Conread position:
               
3-263
               

               
Cow position:
               
chr3:18393557-18393289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 179
               

               
Conread position:
               
3-267
               

               
Cow position:
               
chr3:68881281-68881015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
85, 156
               

               
Conread position:
               
4-158
               

               
Cow position:
               
chr3:53192590-53192428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
87, 40
               

               
Conread position:
               
4-186
               

               
Cow position:
               
chr3:22907886-22907702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
55, 103
               

               
Conread position:
               
4-189
               

               
Cow position:
               
chr3:15992546-15992747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
4-212
               

               
Cow position:
               
chr3:80818560-80818769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
12, 19
               

               
Conread position:
               
4-221
               

               
Cow position:
               
chr3:48252715-48252946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
4-229
               

               
Cow position:
               
chr3:7331281-7331059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
91, 168
               

               
Conread position:
               
4-229
               

               
Cow position:
               
chr3:30179912-30180155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
4-233
               

               
Cow position:
               
chr3:58540697-58540449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 203
               

               
Conread position:
               
4-235
               

               
Cow position:
               
chr3:10896664-10896897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
91, 40
               

               
Conread position:
               
4-237
               

               
Cow position:
               
chr3:24935203-24935442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
93, 10
               

               
Conread position:
               
4-239
               

               
Cow position:
               
chr3:70334872-70334616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
4-240
               

               
Cow position:
               
chr3:38347034-38347270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
35, 14
               

               
Conread position:
               
4-240
               

               
Cow position:
               
chr3:65413448-65413198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
4-240
               

               
Cow position:
               
chr3:71231225-71231474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
13, 45
               

               
Conread position:
               
4-241
               

               
Cow position:
               
chr3:210148-210400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
4-241
               

               
Cow position:
               
chr3:2025016-2025279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
27, 246
               

               
Conread position:
               
4-241
               

               
Cow position:
               
chr3:17935102-17934857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 41
               

               
Conread position:
               
4-241
               

               
Cow position:
               
chr3:28908370-28908122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 62
               

               
Conread position:
               
4-241
               

               
Cow position:
               
chr3:48241448-48241695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
91, 139
               

               
Conread position:
               
4-241
               

               
Cow position:
               
chr3:48810805-48810564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 62
               

               
Conread position:
               
4-241
               

               
Cow position:
               
chr3:54100891-54100645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
4-241
               

               
Cow position:
               
chr3:65968990-65969248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
4-242
               

               
Cow position:
               
chr3:48362917-48363154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
71, 20
               

               
Conread position:
               
4-242
               

               
Cow position:
               
chr3:53790705-53790454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
91, 178
               

               
Conread position:
               
4-243
               

               
Cow position:
               
chr3:19404148-19404381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
147, 63
               

               
Conread position:
               
4-243
               

               
Cow position:
               
chr3:30940647-30940889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
91, 58
               

               
Conread position:
               
4-243
               

               
Cow position:
               
chr3:32584985-32585233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
91, 70
               

               
Conread position:
               
4-243
               

               
Cow position:
               
chr3:53429064-53428834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
4-243
               

               
Cow position:
               
chr3:70899727-70899973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
91, 48
               

               
Conread position:
               
4-254
               

               
Cow position:
               
chr3:22716448-22716203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
109, 63
               

               
Conread position:
               
4-255
               

               
Cow position:
               
chr3:3985159-3985417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
93, 166
               

               
Conread position:
               
4-258
               

               
Cow position:
               
chr3:2393133-2392874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
28, 167
               

               
Conread position:
               
4-258
               

               
Cow position:
               
chr3:26903947-26904208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
34, 111
               

               
Conread position:
               
4-258
               

               
Cow position:
               
chr3:29596223-29596484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
13, 64
               

               
Conread position:
               
4-265
               

               
Cow position:
               
chr3:55970337-55970608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
34, 240
               

               
Conread position:
               
4-294
               

               
Cow position:
               
chr3:24352692-24352997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
94, 185
               

               
Conread position:
               
5-193
               

               
Cow position:
               
chr3:5851091-5850896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
5-214
               

               
Cow position:
               
chr3:29507429-29507636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
84, 36
               

               
Conread position:
               
5-217
               

               
Cow position:
               
chr3:25690622-25690850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
5-218
               

               
Cow position:
               
chr3:31298323-31298105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
33, 110
               

               
Conread position:
               
5-231
               

               
Cow position:
               
chr3:26553883-26553644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
27, 136
               

               
Conread position:
               
5-233
               

               
Cow position:
               
chr3:15052119-15051877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 188
               

               
Conread position:
               
5-233
               

               
Cow position:
               
chr3:26970660-26970886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chr3:44861471-44861237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
51, 165
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chr3:79592052-79591816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
33, 221
               

               
Conread position:
               
5-239
               

               
Cow position:
               
chr3:16547512-16547745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
122, 38
               

               
Conread position:
               
5-240
               

               
Cow position:
               
chr3:61278741-61278988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
30, 156
               

               
Conread position:
               
5-240
               

               
Cow position:
               
chr3:61840110-61840355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
92, 30
               

               
Conread position:
               
5-240
               

               
Cow position:
               
chr3:79292662-79292908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
34, 69
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr3:17895679-17895929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
73, 119
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr3:35153454-35153698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr3:48296542-48296779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
89, 169
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr3:50614470-50614722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr3:55109782-55109532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
90, 15
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr3:64172278-64172521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
94, 37
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr3:71237989-71238234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
90, 194
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chr3:15752798-15752553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
55, 159
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chr3:17447775-17447532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
83, 15
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chr3:45881742-45881981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 79
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chr3:52608020-52608265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chr3:55272212-55271962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
88, 13
               

               
Conread position:
               
5-254
               

               
Cow position:
               
chr3:26493389-26493140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
51, 201
               

               
Conread position:
               
5-254
               

               
Cow position:
               
chr3:37485945-37485706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
95, 69
               

               
Conread position:
               
5-254
               

               
Cow position:
               
chr3:55835992-55835727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
5-261
               

               
Cow position:
               
chr3:18497851-18498116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 227
               

               
Conread position:
               
5-263
               

               
Cow position:
               
chr3:67744790-67744527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
43, 81
               

               
Conread position:
               
6-191
               

               
Cow position:
               
chr3:83201690-83201493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
6-221
               

               
Cow position:
               
chr3:12675201-12674982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
32, 110
               

               
Conread position:
               
6-233
               

               
Cow position:
               
chr3:84597126-84596892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
62, 107
               

               
Conread position:
               
6-239
               

               
Cow position:
               
chr3:56541-56298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
89, 37
               

               
Conread position:
               
6-241
               

               
Cow position:
               
chr3:53046825-53046582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
26, 167
               

               
Conread position:
               
6-241
               

               
Cow position:
               
chr3:59610887-59610637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
6-241
               

               
Cow position:
               
chr3:68586855-68587102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
85, 33
               

               
Conread position:
               
6-242
               

               
Cow position:
               
chr3:72390916-72391164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
6-243
               

               
Cow position:
               
chr3:26065837-26066084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
89, 161
               

               
Conread position:
               
6-243
               

               
Cow position:
               
chr3:29813078-29813314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
119, 89
               

               
Conread position:
               
6-243
               

               
Cow position:
               
chr3:68616491-68616247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
50, 154
               

               
Conread position:
               
6-243
               

               
Cow position:
               
chr3:71246859-71247102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
32, 12
               

               
Conread position:
               
6-256
               

               
Cow position:
               
chr3:31771530-31771777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
94, 32
               

               
Conread position:
               
6-260
               

               
Cow position:
               
chr3:25477650-25477899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
94, 31
               

               
Conread position:
               
7-241
               

               
Cow position:
               
chr3:12712084-12711834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
7-241
               

               
Cow position:
               
chr3:74134540-74134785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
62, 107
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr3:48073039-48072799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
53, 109
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr3:80564798-80565049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
88, 143
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr3:83845739-83845995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
55, 187
               

               
Conread position:
               
8-231
               

               
Cow position:
               
chr3:4036241-4036014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
65, 108
               

               
Conread position:
               
8-237
               

               
Cow position:
               
chr3:26219214-26218974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
87, 43
               

               
Conread position:
               
8-241
               

               
Cow position:
               
chr3:59630666-59630432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
139, 87
               

               
Conread position:
               
8-241
               

               
Cow position:
               
chr3:59884237-59883988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
9-207
               

               
Cow position:
               
chr3:43726915-43727126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
86, 22
               

               
Conread position:
               
9-228
               

               
Cow position:
               
chr3:76015127-76015360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
9-233
               

               
Cow position:
               
chr3:22676254-22676037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
9-240
               

               
Cow position:
               
chr3:75057291-75057066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
67, 162
               

               
Conread position:
               
9-241
               

               
Cow position:
               
chr3:24872552-24872785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
88, 36
               

               
Conread position:
               
9-241
               

               
Cow position:
               
chr3:29360303-29360070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
60, 103
               

               
Conread position:
               
9-241
               

               
Cow position:
               
chr3:58767106-58767344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
9-241
               

               
Cow position:
               
chr3:80581500-80581736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
29, 168
               

               
Conread position:
               
9-243
               

               
Cow position:
               
chr3:50069601-50069846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
79, 149
               

               
Conread position:
               
9-243
               

               
Cow position:
               
chr3:68156575-68156806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
86, 36
               

               
Conread position:
               
9-244
               

               
Cow position:
               
chr3:12978780-12978533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
9-254
               

               
Cow position:
               
chr3:75479839-75480093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
80, 179
               

               
Conread position:
               
9-258
               

               
Cow position:
               
chr3:60597379-60597636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
29, 175
               

               
Conread position:
               
9-266
               

               
Cow position:
               
chr3:76387762-76387501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
75, 148
               

               
Conread position:
               
10-240
               

               
Cow position:
               
chr3:2648678-2648430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
10-243
               

               
Cow position:
               
chr3:15506289-15506531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
72, 181
               

               
Conread position:
               
11-241
               

               
Cow position:
               
chr3:59101667-59101908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
23, 165
               

               
Conread position:
               
11-243
               

               
Cow position:
               
chr3:53508460-53508694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
67, 104
               

               
Conread position:
               
12-233
               

               
Cow position:
               
chr3:58973143-58973369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
13-183
               

               
Cow position:
               
chr3:6361447-6361605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
13-260
               

               
Cow position:
               
chr3:73742014-73741773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
14-229
               

               
Cow position:
               
chr3:19793751-19793522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
20, 201
               

               
Conread position:
               
14-243
               

               
Cow position:
               
chr3:63179702-63179937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
26, 188
               

               
Conread position:
               
16-235
               

               
Cow position:
               
chr3:15153536-15153765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
52, 217
               

               
Conread position:
               
16-241
               

               
Cow position:
               
chr3:17134181-17134415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
40, 25
               

               
Conread position:
               
16-241
               

               
Cow position:
               
chr3:24468535-24468304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
79, 133
               

               
Conread position:
               
16-242
               

               
Cow position:
               
chr3:19585705-19585945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
79, 176
               

               
Conread position:
               
16-260
               

               
Cow position:
               
chr3:77581952-77582205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
16, 156
               

               
Conread position:
               
17-241
               

               
Cow position:
               
chr3:5374179-5374409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
78, 56
               

               
Conread position:
               
20-232
               

               
Cow position:
               
chr3:46541980-46541757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
20-241
               

               
Cow position:
               
chr3:8733508-8733278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
18, 155
               

               
Conread position:
               
20-243
               

               
Cow position:
               
chr3:23408504-23408275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
75, 159
               

               
Conread position:
               
20-243
               

               
Cow position:
               
chr3:55177905-55177663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
20-255
               

               
Cow position:
               
chr3:3032252-3032502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
20, 149
               

               
Conread position:
               
21-243
               

               
Cow position:
               
chr3:79094199-79093960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
74, 181
               

               
Conread position:
               
23-247
               

               
Cow position:
               
chr3:79196610-79196846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
25-252
               

               
Cow position:
               
chr3:5366623-5366857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
7, 17
               

               
Conread position:
               
26-243
               

               
Cow position:
               
chr3:10372134-10372351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
69, 12
               

               
Conread position:
               
26-256
               

               
Cow position:
               
chr3:61143954-61144190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
66, 133
               

               
Conread position:
               
29-240
               

               
Cow position:
               
chr3:73298944-73299158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
72, 16
               

               
Conread position:
               
29-243
               

               
Cow position:
               
chr3:1785385-1785162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
31-233
               

               
Cow position:
               
chr3:71238332-71238542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
67, 149
               

               
Conread position:
               
31-241
               

               
Cow position:
               
chr3:3889708-3889488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
68, 112
               

               
Conread position:
               
31-256
               

               
Cow position:
               
chr3:73820511-73820273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
64, 55
               

               
Conread position:
               
32-243
               

               
Cow position:
               
chr3:74584077-74584290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
66, 194
               

               
Conread position:
               
33-241
               

               
Cow position:
               
chr3:34270776-34270995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
64, 142
               

               
Conread position:
               
33-243
               

               
Cow position:
               
chr3:17235348-17235134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
64, 30
               

               
Conread position:
               
37-239
               

               
Cow position:
               
chr3:76024384-76024584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
69, 77
               

               
Conread position:
               
37-241
               

               
Cow position:
               
chr3:32457065-32457274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
58, 191
               

               
Conread position:
               
37-258
               

               
Cow position:
               
chr3:38783481-38783700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
68, 85
               

               
Conread position:
               
43-244
               

               
Cow position:
               
chr3:8901513-8901713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
151, 126
               

               
Conread position:
               
44-241
               

               
Cow position:
               
chr3:10103919-10104121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
48, 35
               

               
Conread position:
               
45-253
               

               
Cow position:
               
chr3:51033243-51033459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
47-244
               

               
Cow position:
               
chr3:3649343-3649140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
50, 108
               

               
Conread position:
               
48-243
               

               
Cow position:
               
chr3:59604726-59604926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
29, 136
               

               
Conread position:
               
48-250
               

               
Cow position:
               
chr3:16254948-16254751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
51, 71
               

               
Conread position:
               
48-255
               

               
Cow position:
               
chr3:35621178-35621396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
49, 119
               

               
Conread position:
               
49-241
               

               
Cow position:
               
chr3:48468059-48468254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
48, 72
               

               
Conread position:
               
62-239
               

               
Cow position:
               
chr3:84175922-84175744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
62-241
               

               
Cow position:
               
chr3:65236929-65237105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
33, 12
               

               
Conread position:
               
62-243
               

               
Cow position:
               
chr3:7661756-7661935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
14, 100
               

               
Conread position:
               
73-252
               

               
Cow position:
               
chr3:20333921-20334098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
75-231
               

               
Cow position:
               
chr3:65019948-65019794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
75-241
               

               
Cow position:
               
chr3:74846794-74846628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
33, 47
               

               
Conread position:
               
75-243
               

               
Cow position:
               
chr3:55984012-55984181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
31, 116
               

               
Conread position:
               
75-243
               

               
Cow position:
               
chr3:83988448-83988615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
75-258
               

               
Cow position:
               
chr3:3656431-3656609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
76-241
               

               
Cow position:
               
chr3:39248107-39247941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
15, 30
               

               
Conread position:
               
77-240
               

               
Cow position:
               
chr3:14546920-14547080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
78-240
               

               
Cow position:
               
chr3:49996807-49996641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
80-260
               

               
Cow position:
               
chr3:69650967-69650789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
82-240
               

               
Cow position:
               
chr3:21997864-21997708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
82-241
               

               
Cow position:
               
chr3:55085249-55085088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
61, 143
               

               
Conread position:
               
82-241
               

               
Cow position:
               
chr3:84250620-84250463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
30, 24
               

               
Conread position:
               
84-257
               

               
Cow position:
               
chr3:49344617-49344789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
165, 0
               

               
Conread position:
               
87-241
               

               
Cow position:
               
chr3:81234315-81234470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
90-219
               

               
Cow position:
               
chr3:45222223-45222092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
23, 15
               

               
Conread position:
               
90-233
               

               
Cow position:
               
chr3:27545889-27545746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
10, 35
               

               
Conread position:
               
90-233
               

               
Cow position:
               
chr3:56483444-56483592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
90-235
               

               
Cow position:
               
chr3:71497208-71497063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
90-237
               

               
Cow position:
               
chr3:34871497-34871642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
90-238
               

               
Cow position:
               
chr3:81277538-81277390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
90-239
               

               
Cow position:
               
chr3:80468743-80468599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
90-241
               

               
Cow position:
               
chr3:1517581-1517431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
90-241
               

               
Cow position:
               
chr3:18059633-18059784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
74, 13
               

               
Conread position:
               
90-241
               

               
Cow position:
               
chr3:23203303-23203151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
12, 119
               

               
Conread position:
               
90-241
               

               
Cow position:
               
chr3:27727900-27727750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
90-241
               

               
Cow position:
               
chr3:37041347-37041500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
20, 29
               

               
Conread position:
               
90-241
               

               
Cow position:
               
chr3:58318021-58317867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
90-241
               

               
Cow position:
               
chr3:61467260-61467109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
90-241
               

               
Cow position:
               
chr3:72503966-72503815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
90-241
               

               
Cow position:
               
chr3:79645508-79645349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
90-243
               

               
Cow position:
               
chr3:3478324-3478172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
131, 80
               

               
Conread position:
               
90-243
               

               
Cow position:
               
chr3:14194248-14194096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
90-243
               

               
Cow position:
               
chr3:61224815-61224659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
90-244
               

               
Cow position:
               
chr3:47753156-47753310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
90-246
               

               
Cow position:
               
chr3:9588706-9588558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
90-247
               

               
Cow position:
               
chr3:64196756-64196913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
15, 23
               

               
Conread position:
               
90-256
               

               
Cow position:
               
chr3:60389698-60389860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
90-261
               

               
Cow position:
               
chr3:2067824-2067993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
91-240
               

               
Cow position:
               
chr3:72745632-72745483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
91-241
               

               
Cow position:
               
chr3:2483935-2484085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
91-243
               

               
Cow position:
               
chr3:56704387-56704238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
92-229
               

               
Cow position:
               
chr3:70614553-70614418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
9, 84
               

               
Conread position:
               
92-231
               

               
Cow position:
               
chr3:73237127-73237267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
92-243
               

               
Cow position:
               
chr3:22165484-22165333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
11, 83
               

               
Conread position:
               
92-246
               

               
Cow position:
               
chr3:9116960-9117112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
92-246
               

               
Cow position:
               
chr3:54982148-54981993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
28, 96
               

               
Conread position:
               
93-240
               

               
Cow position:
               
chr3:33329749-33329896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
12, 18
               

               
Conread position:
               
93-243
               

               
Cow position:
               
chr3:4548961-4549110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
93-256
               

               
Cow position:
               
chr3:37599493-37599332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
94-216
               

               
Cow position:
               
chr3:68130348-68130231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
94-242
               

               
Cow position:
               
chr3:31361353-31361507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
13, 48
               

               
Conread position:
               
94-258
               

               
Cow position:
               
chr3:53084054-53083886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
95-240
               

               
Cow position:
               
chr3:31350169-31350024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
95-241
               

               
Cow position:
               
chr3:11292313-11292167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
95-243
               

               
Cow position:
               
chr3:10668944-10668796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
124, 75
               

               
Conread position:
               
95-243
               

               
Cow position:
               
chr3:15173015-15173164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
95-243
               

               
Cow position:
               
chr3:74802133-74801983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
96-247
               

               
Cow position:
               
chr3:74601050-74601201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
98-241
               

               
Cow position:
               
chr3:23667558-23667701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
67, 140
               

               
Conread position:
               
98-241
               

               
Cow position:
               
chr3:56949150-56949007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
98-241
               

               
Cow position:
               
chr3:59299509-59299657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
98-243
               

               
Cow position:
               
chr3:15160460-15160603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
18, 29
               

               
Conread position:
               
100-223
               

               
Cow position:
               
chr3:22871903-22871780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
100-239
               

               
Cow position:
               
chr3:3471978-3472119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
14, 37
               

               
Conread position:
               
101-240
               

               
Cow position:
               
chr3:3316874-3316736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
101-241
               

               
Cow position:
               
chr3:18001139-18001279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
101-241
               

               
Cow position:
               
chr3:74900699-74900562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
101-243
               

               
Cow position:
               
chr3:49363051-49363192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
102-241
               

               
Cow position:
               
chr3:40213090-40212953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
132, 7
               

               
Conread position:
               
102-243
               

               
Cow position:
               
chr3:51349765-51349906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
102-243
               

               
Cow position:
               
chr3:64135660-64135801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
105-243
               

               
Cow position:
               
chr3:71423606-71423472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
105-259
               

               
Cow position:
               
chr3:41652321-41652474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
106-233
               

               
Cow position:
               
chr3:67626397-67626268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
50, 83
               

               
Conread position:
               
106-238
               

               
Cow position:
               
chr3:22221274-22221405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
106-241
               

               
Cow position:
               
chr3:2637872-2638007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
106-243
               

               
Cow position:
               
chr3:68004756-68004619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
106-243
               

               
Cow position:
               
chr3:82629262-82629398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
106-261
               

               
Cow position:
               
chr3:11606260-11606424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
107-241
               

               
Cow position:
               
chr3:20515871-20515737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
107-243
               

               
Cow position:
               
chr3:44330489-44330354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
107-253
               

               
Cow position:
               
chr3:50593965-50593822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
109-233
               

               
Cow position:
               
chr3:53904406-53904528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
109-240
               

               
Cow position:
               
chr3:10026736-10026611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
109-243
               

               
Cow position:
               
chr3:5305747-5305881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-243
               

               
Cow position:
               
chr3:7427951-7428081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
109-243
               

               
Cow position:
               
chr3:23132220-23132086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
110-230
               

               
Cow position:
               
chr3:21641938-21642057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
110-241
               

               
Cow position:
               
chr3:11281716-11281846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
110-244
               

               
Cow position:
               
chr3:32409162-32409296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
110-247
               

               
Cow position:
               
chr3:29828198-29828060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
110-257
               

               
Cow position:
               
chr3:69785675-69785528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
50, 140
               

               
Conread position:
               
111-240
               

               
Cow position:
               
chr3:28258046-28258174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
111-241
               

               
Cow position:
               
chr3:59474073-59474203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
111-243
               

               
Cow position:
               
chr3:8349614-8349481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 124
               

               
Conread position:
               
111-243
               

               
Cow position:
               
chr3:16505524-16505396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
111-265
               

               
Cow position:
               
chr3:82174108-82173956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
112-231
               

               
Cow position:
               
chr3:5040355-5040237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
113-243
               

               
Cow position:
               
chr3:82165615-82165477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
114-241
               

               
Cow position:
               
chr3:67959962-67959839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
114-243
               

               
Cow position:
               
chr3:59919986-59920110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
114-243
               

               
Cow position:
               
chr3:74644511-74644640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
29, 38
               

               
Conread position:
               
119-224
               

               
Cow position:
               
chr3:83604538-83604641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
120-243
               

               
Cow position:
               
chr3:10732850-10732974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
123-243
               

               
Cow position:
               
chr3:64648455-64648575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
123-263
               

               
Cow position:
               
chr3:44961041-44960903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
125-243
               

               
Cow position:
               
chr3:76269857-76269974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
128-243
               

               
Cow position:
               
chr3:24371890-24372004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
128-258
               

               
Cow position:
               
chr3:28902791-28902663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
129-243
               

               
Cow position:
               
chr3:35238982-35239095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
129-244
               

               
Cow position:
               
chr3:28556194-28556078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
133-243
               

               
Cow position:
               
chr3:67407393-67407283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
134-244
               

               
Cow position:
               
chr3:16601416-16601526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
136-233
               

               
Cow position:
               
chr3:53256505-53256601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
138-243
               

               
Cow position:
               
chr3:73589793-73589688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
146-243
               

               
Cow position:
               
chr3:35285029-35285126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
155-243
               

               
Cow position:
               
chr3:52845551-52845639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
89
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
155-257
               

               
Cow position:
               
chr3:17531743-17531642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
156-243
               

               
Cow position:
               
chr3:27670409-27670496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
88
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
170-257
               

               
Cow position:
               
chr3:562784-562698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
88
               

               
Alignm identity:
               
77
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
79, 0
               
Show alignments to all cow chromosomes.