Cow genome map
| Conread name: | rcbl_0686.y1 |
| Conread position: | 177-403 |
| Cow position: | chr12:25989024-25989249 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 123, 18 |
| Conread position: | 187-426 |
| Cow position: | chr12:11587953-11587709 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 21, 59 |
| Conread position: | 190-398 |
| Cow position: | chr12:17928901-17929110 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 23, 54 |
| Conread position: | 190-427 |
| Cow position: | chr12:4720124-4719881 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 23, 54 |
| Conread position: | 191-414 |
| Cow position: | chr12:36790635-36790865 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 104, 52 |
| Conread position: | 192-379 |
| Cow position: | chr12:45782400-45782208 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 94, 51 |
| Conread position: | 192-380 |
| Cow position: | chr12:17701859-17702044 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 97, 51 |
| Conread position: | 194-423 |
| Cow position: | chr12:1333393-1333169 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 26, 53 |
| Conread position: | 199-363 |
| Cow position: | chr12:11272658-11272827 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 45 |
| Conread position: | 199-412 |
| Cow position: | chr12:19508393-19508610 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 200-406 |
| Cow position: | chr12:26146998-26147215 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 20, 44 |
| Conread position: | 200-423 |
| Cow position: | chr12:9482133-9482369 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 96, 43 |
| Conread position: | 200-424 |
| Cow position: | chr12:13911406-13911644 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 20, 46 |
| Conread position: | 201-311 |
| Cow position: | chr12:39382788-39382680 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 201-394 |
| Cow position: | chr12:17250673-17250482 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 12, 42 |
| Conread position: | 201-395 |
| Cow position: | chr12:37123821-37123615 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 12, 40 |
| Conread position: | 201-410 |
| Cow position: | chr12:35469282-35469496 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 201-412 |
| Cow position: | chr12:10827954-10827734 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 95, 42 |
| Conread position: | 201-412 |
| Cow position: | chr12:18518840-18518622 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 97, 46 |
| Conread position: | 201-423 |
| Cow position: | chr12:23917008-23916784 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 12, 47 |
| Conread position: | 201-423 |
| Cow position: | chr12:25193210-25192988 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 15, 42 |
| Conread position: | 201-424 |
| Cow position: | chr12:15389238-15389008 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 81, 42 |
| Conread position: | 201-425 |
| Cow position: | chr12:29966273-29966043 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 113, 41 |
| Conread position: | 201-426 |
| Cow position: | chr12:18103448-18103674 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 201-427 |
| Cow position: | chr12:30170820-30170603 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 56, 46 |
| Conread position: | 201-427 |
| Cow position: | chr12:35368813-35368576 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 20, 42 |
| Conread position: | 201-428 |
| Cow position: | chr12:9130071-9129842 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 99, 43 |
| Conread position: | 201-428 |
| Cow position: | chr12:40910116-40910356 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 201-428 |
| Cow position: | chr12:42967164-42966933 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 15, 43 |
| Conread position: | 202-412 |
| Cow position: | chr12:20776762-20776972 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 87, 41 |
| Conread position: | 202-426 |
| Cow position: | chr12:30210637-30210418 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 104, 39 |
| Conread position: | 202-427 |
| Cow position: | chr12:9914948-9914723 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 55, 41 |
| Conread position: | 203-390 |
| Cow position: | chr12:6958385-6958190 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 74, 40 |
| Conread position: | 203-406 |
| Cow position: | chr12:23106105-23105892 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 79, 40 |
| Conread position: | 203-406 |
| Cow position: | chr12:43855056-43854849 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 87, 40 |
| Conread position: | 203-426 |
| Cow position: | chr12:5714784-5714565 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 166, 40 |
| Conread position: | 203-426 |
| Cow position: | chr12:33851523-33851296 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 17, 41 |
| Conread position: | 203-427 |
| Cow position: | chr12:12637018-12637249 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 10, 41 |
| Conread position: | 203-427 |
| Cow position: | chr12:24181309-24181083 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 78, 39 |
| Conread position: | 203-427 |
| Cow position: | chr12:35770858-35771087 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 75, 39 |
| Conread position: | 203-428 |
| Cow position: | chr12:5680831-5680615 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 103, 40 |
| Conread position: | 204-390 |
| Cow position: | chr12:6666726-6666545 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 94, 39 |
| Conread position: | 204-398 |
| Cow position: | chr12:43619448-43619243 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 92, 36 |
| Conread position: | 204-406 |
| Cow position: | chr12:48579000-48578798 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 93, 39 |
| Conread position: | 204-421 |
| Cow position: | chr12:44822447-44822232 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 103, 38 |
| Conread position: | 204-426 |
| Cow position: | chr12:37008544-37008768 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 16, 42 |
| Conread position: | 204-426 |
| Cow position: | chr12:40157862-40158087 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 16, 40 |
| Conread position: | 205-408 |
| Cow position: | chr12:25823064-25823274 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 93, 35 |
| Conread position: | 205-418 |
| Cow position: | chr12:35240939-35241162 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 83, 38 |
| Conread position: | 205-425 |
| Cow position: | chr12:4769083-4768862 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 83, 37 |
| Conread position: | 205-426 |
| Cow position: | chr12:47267144-47267374 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 94, 38 |
| Conread position: | 206-418 |
| Cow position: | chr12:27802896-27803107 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 88, 11 |
| Conread position: | 206-424 |
| Cow position: | chr12:40881759-40881973 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 38 |
| Conread position: | 206-426 |
| Cow position: | chr12:6688048-6687828 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 27, 38 |
| Conread position: | 207-411 |
| Cow position: | chr12:38774083-38774293 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 87, 36 |
| Conread position: | 207-424 |
| Cow position: | chr12:17624674-17624888 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 60, 35 |
| Conread position: | 207-426 |
| Cow position: | chr12:31948274-31948050 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 112, 36 |
| Conread position: | 208-397 |
| Cow position: | chr12:37480676-37480871 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 100, 35 |
| Conread position: | 208-413 |
| Cow position: | chr12:4954982-4954775 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 78, 35 |
| Conread position: | 211-427 |
| Cow position: | chr12:3623850-3623628 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 9, 33 |
| Conread position: | 214-380 |
| Cow position: | chr12:8143658-8143826 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 94, 28 |
| Conread position: | 214-408 |
| Cow position: | chr12:15414716-15414915 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 86, 15 |
| Conread position: | 214-426 |
| Cow position: | chr12:22515583-22515797 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 74, 31 |
| Conread position: | 214-427 |
| Cow position: | chr12:27563224-27563443 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 88, 25 |
| Conread position: | 214-427 |
| Cow position: | chr12:36500792-36501014 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 89, 28 |
| Conread position: | 218-406 |
| Cow position: | chr12:3371703-3371898 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 24, 116 |
| Conread position: | 218-427 |
| Cow position: | chr12:6754341-6754130 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 73, 7 |
| Conread position: | 219-428 |
| Cow position: | chr12:33949050-33948837 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 68, 18 |
| Conread position: | 220-393 |
| Cow position: | chr12:41220864-41221041 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 95, 23 |
| Conread position: | 220-427 |
| Cow position: | chr12:3616132-3615936 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 86, 23 |
| Conread position: | 221-426 |
| Cow position: | chr12:42180980-42181194 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 58, 21 |
| Conread position: | 234-398 |
| Cow position: | chr12:11917979-11918142 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 64, 9 |
| Conread position: | 234-407 |
| Cow position: | chr12:1701679-1701852 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 72, 8 |
| Conread position: | 243-427 |
| Cow position: | chr12:4866941-4866751 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 47, 85 |
| Conread position: | 243-427 |
| Cow position: | chr12:31517056-31517237 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 63, 40 |
| Conread position: | 244-427 |
| Cow position: | chr12:30661823-30662016 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 36, 84 |
| Conread position: | 262-428 |
| Cow position: | chr12:6210058-6210225 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 32, 60 |
| Conread position: | 294-426 |
| Cow position: | chr12:4797367-4797235 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 13, 27 |
| Conread position: | 294-427 |
| Cow position: | chr12:45167953-45168085 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 75, 26 |
Show alignments to all cow chromosomes.