Cow genome map
| Conread name: | rcbl_0686.y1 |
| Conread position: | 138-427 |
| Cow position: | chr14:48741091-48740799 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 190-426 |
| Cow position: | chr14:12244557-12244315 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 96, 53 |
| Conread position: | 195-310 |
| Cow position: | chr14:13176600-13176486 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 195-370 |
| Cow position: | chr14:25912486-25912663 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 89, 16 |
| Conread position: | 195-427 |
| Cow position: | chr14:29964848-29965089 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 101, 19 |
| Conread position: | 199-423 |
| Cow position: | chr14:7342300-7342521 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 117, 15 |
| Conread position: | 199-424 |
| Cow position: | chr14:6600119-6599890 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 199-427 |
| Cow position: | chr14:8786703-8786480 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 199-427 |
| Cow position: | chr14:21933508-21933273 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 93, 13 |
| Conread position: | 199-427 |
| Cow position: | chr14:47673045-47672815 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 24, 45 |
| Conread position: | 201-361 |
| Cow position: | chr14:37504348-37504518 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 95, 42 |
| Conread position: | 201-369 |
| Cow position: | chr14:21593166-21592992 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 201-374 |
| Cow position: | chr14:10721866-10721690 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 96, 42 |
| Conread position: | 201-380 |
| Cow position: | chr14:41267887-41267709 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 105, 42 |
| Conread position: | 201-392 |
| Cow position: | chr14:18270195-18270396 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 201-394 |
| Cow position: | chr14:40230799-40230598 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 81, 43 |
| Conread position: | 201-402 |
| Cow position: | chr14:35421251-35421038 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 41, 189 |
| Conread position: | 201-406 |
| Cow position: | chr14:27364413-27364627 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 97, 42 |
| Conread position: | 201-423 |
| Cow position: | chr14:15428314-15428544 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 68, 42 |
| Conread position: | 201-423 |
| Cow position: | chr14:35381424-35381656 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 15, 43 |
| Conread position: | 201-424 |
| Cow position: | chr14:36289955-36289734 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 76, 42 |
| Conread position: | 201-425 |
| Cow position: | chr14:13809790-13810002 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 105, 42 |
| Conread position: | 201-425 |
| Cow position: | chr14:33247581-33247361 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 106, 14 |
| Conread position: | 201-427 |
| Cow position: | chr14:2975250-2975023 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 128, 42 |
| Conread position: | 201-427 |
| Cow position: | chr14:9019877-9020095 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 163, 41 |
| Conread position: | 201-427 |
| Cow position: | chr14:13385201-13385438 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 19, 43 |
| Conread position: | 201-427 |
| Cow position: | chr14:23424101-23424329 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 69, 42 |
| Conread position: | 201-427 |
| Cow position: | chr14:24387288-24387517 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 96, 19 |
| Conread position: | 201-428 |
| Cow position: | chr14:8923751-8923513 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 89, 42 |
| Conread position: | 201-428 |
| Cow position: | chr14:20016875-20016636 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 15, 43 |
| Conread position: | 201-428 |
| Cow position: | chr14:24236658-24236896 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 93, 42 |
| Conread position: | 201-428 |
| Cow position: | chr14:33457209-33456972 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 93, 42 |
| Conread position: | 201-428 |
| Cow position: | chr14:41253143-41252924 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 105, 42 |
| Conread position: | 202-422 |
| Cow position: | chr14:6541890-6541659 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 84, 41 |
| Conread position: | 202-427 |
| Cow position: | chr14:5630004-5630232 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 18, 42 |
| Conread position: | 202-427 |
| Cow position: | chr14:36425567-36425341 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 84, 40 |
| Conread position: | 202-427 |
| Cow position: | chr14:37422936-37422720 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 105, 43 |
| Conread position: | 202-427 |
| Cow position: | chr14:49940850-49941078 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 89, 41 |
| Conread position: | 203-362 |
| Cow position: | chr14:41755994-41756153 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 105, 40 |
| Conread position: | 203-363 |
| Cow position: | chr14:40806761-40806606 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 17, 31 |
| Conread position: | 203-418 |
| Cow position: | chr14:20245331-20245107 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 10, 40 |
| Conread position: | 203-424 |
| Cow position: | chr14:39037076-39037288 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 17, 40 |
| Conread position: | 203-425 |
| Cow position: | chr14:49487802-49488028 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 81, 38 |
| Conread position: | 203-427 |
| Cow position: | chr14:8541369-8541142 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 72, 40 |
| Conread position: | 203-427 |
| Cow position: | chr14:23442864-23443090 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 67, 40 |
| Conread position: | 203-427 |
| Cow position: | chr14:28924002-28924238 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 10, 41 |
| Conread position: | 203-428 |
| Cow position: | chr14:16352196-16352415 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 104, 44 |
| Conread position: | 203-428 |
| Cow position: | chr14:18309462-18309236 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 92, 40 |
| Conread position: | 203-428 |
| Cow position: | chr14:25986350-25986587 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 93, 40 |
| Conread position: | 204-425 |
| Cow position: | chr14:5222447-5222223 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 9, 39 |
| Conread position: | 204-427 |
| Cow position: | chr14:21535464-21535236 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 77, 39 |
| Conread position: | 205-426 |
| Cow position: | chr14:27733448-27733673 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 97, 38 |
| Conread position: | 205-428 |
| Cow position: | chr14:8101636-8101861 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 28, 39 |
| Conread position: | 206-426 |
| Cow position: | chr14:36443176-36442949 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 76, 37 |
| Conread position: | 206-427 |
| Cow position: | chr14:4877387-4877160 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 14, 38 |
| Conread position: | 207-378 |
| Cow position: | chr14:1771118-1770940 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 207-380 |
| Cow position: | chr14:41623168-41623341 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 78, 38 |
| Conread position: | 207-406 |
| Cow position: | chr14:7127702-7127907 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 93, 35 |
| Conread position: | 207-412 |
| Cow position: | chr14:18559215-18559005 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 84, 38 |
| Conread position: | 207-412 |
| Cow position: | chr14:33229558-33229341 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 87, 36 |
| Conread position: | 207-412 |
| Cow position: | chr14:39434412-39434203 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 79, 36 |
| Conread position: | 207-425 |
| Cow position: | chr14:12512049-12511833 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 79, 36 |
| Conread position: | 207-426 |
| Cow position: | chr14:38168546-38168761 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 160, 36 |
| Conread position: | 208-421 |
| Cow position: | chr14:50362635-50362858 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 108, 34 |
| Conread position: | 208-427 |
| Cow position: | chr14:10609522-10609750 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 107, 32 |
| Conread position: | 208-427 |
| Cow position: | chr14:20466778-20467000 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 12, 36 |
| Conread position: | 208-427 |
| Cow position: | chr14:23104154-23103931 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 5, 36 |
| Conread position: | 208-428 |
| Cow position: | chr14:26655294-26655063 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 74, 35 |
| Conread position: | 209-427 |
| Cow position: | chr14:36555286-36555085 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 98, 32 |
| Conread position: | 209-428 |
| Cow position: | chr14:12081282-12081063 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 74, 34 |
| Conread position: | 209-428 |
| Cow position: | chr14:40754400-40754176 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 77, 34 |
| Conread position: | 211-421 |
| Cow position: | chr14:13928428-13928637 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 153, 31 |
| Conread position: | 214-412 |
| Cow position: | chr14:12884113-12884318 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 94, 26 |
| Conread position: | 214-423 |
| Cow position: | chr14:18941439-18941220 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 82, 26 |
| Conread position: | 214-427 |
| Cow position: | chr14:35503212-35503432 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 72, 29 |
| Conread position: | 219-394 |
| Cow position: | chr14:35651926-35651748 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 67, 23 |
| Conread position: | 219-427 |
| Cow position: | chr14:7695118-7695337 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 10 |
| Conread position: | 220-425 |
| Cow position: | chr14:46997907-46998107 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 87, 23 |
| Conread position: | 225-423 |
| Cow position: | chr14:12127537-12127344 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 73, 17 |
| Conread position: | 229-401 |
| Cow position: | chr14:3173862-3173693 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 135, 14 |
| Conread position: | 295-427 |
| Cow position: | chr14:25403997-25403865 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 12, 28 |
| Conread position: | 297-427 |
| Cow position: | chr14:19129447-19129576 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 67, 23 |
| Conread position: | 297-427 |
| Cow position: | chr14:34399857-34399728 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 69, 23 |
| Conread position: | 297-427 |
| Cow position: | chr14:34449030-34448901 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 69, 23 |
Show alignments to all cow chromosomes.