Cow genome map
| Conread name: | rcbl_0686.y1 |
| Conread position: | 180-428 |
| Cow position: | chr17:10769258-10769499 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 28, 65 |
| Conread position: | 187-422 |
| Cow position: | chr17:11101554-11101785 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 26, 59 |
| Conread position: | 189-426 |
| Cow position: | chr17:36864883-36864644 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 31, 55 |
| Conread position: | 189-427 |
| Cow position: | chr17:25126604-25126363 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 19, 55 |
| Conread position: | 190-427 |
| Cow position: | chr17:15664935-15664690 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 23, 53 |
| Conread position: | 194-427 |
| Cow position: | chr17:32349316-32349084 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 96, 20 |
| Conread position: | 195-426 |
| Cow position: | chr17:12306147-12306385 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 96, 48 |
| Conread position: | 195-427 |
| Cow position: | chr17:22051337-22051576 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 25, 49 |
| Conread position: | 195-427 |
| Cow position: | chr17:29245684-29245456 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 112, 20 |
| Conread position: | 199-391 |
| Cow position: | chr17:25875645-25875444 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 14, 44 |
| Conread position: | 199-425 |
| Cow position: | chr17:12289162-12289394 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 97, 15 |
| Conread position: | 199-427 |
| Cow position: | chr17:924112-923892 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 199-427 |
| Cow position: | chr17:2275712-2275483 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 89, 30 |
| Conread position: | 199-427 |
| Cow position: | chr17:22189680-22189449 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 92, 44 |
| Conread position: | 199-427 |
| Cow position: | chr17:39606670-39606443 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 94, 18 |
| Conread position: | 199-427 |
| Cow position: | chr17:40355510-40355271 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 115, 44 |
| Conread position: | 200-427 |
| Cow position: | chr17:14033393-14033627 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 73, 43 |
| Conread position: | 201-307 |
| Cow position: | chr17:4271111-4271218 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 12, 41 |
| Conread position: | 201-374 |
| Cow position: | chr17:3387965-3387783 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 107, 14 |
| Conread position: | 201-380 |
| Cow position: | chr17:43323295-43323485 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 95, 42 |
| Conread position: | 201-388 |
| Cow position: | chr17:6761607-6761796 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 92, 42 |
| Conread position: | 201-412 |
| Cow position: | chr17:29292143-29292352 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 93, 44 |
| Conread position: | 201-412 |
| Cow position: | chr17:37163298-37163503 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 163, 44 |
| Conread position: | 201-423 |
| Cow position: | chr17:15684751-15684526 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 19, 43 |
| Conread position: | 201-427 |
| Cow position: | chr17:1469614-1469392 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 15, 43 |
| Conread position: | 201-427 |
| Cow position: | chr17:13922729-13922494 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 87, 42 |
| Conread position: | 201-427 |
| Cow position: | chr17:30713593-30713358 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 89, 40 |
| Conread position: | 201-428 |
| Cow position: | chr17:3619859-3620073 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 163, 41 |
| Conread position: | 201-428 |
| Cow position: | chr17:12946112-12946337 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 95, 42 |
| Conread position: | 202-394 |
| Cow position: | chr17:3364835-3364635 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 81, 41 |
| Conread position: | 202-406 |
| Cow position: | chr17:10414739-10414532 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 89, 41 |
| Conread position: | 202-411 |
| Cow position: | chr17:25128108-25128324 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 98, 41 |
| Conread position: | 202-418 |
| Cow position: | chr17:9770752-9770534 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 11, 42 |
| Conread position: | 202-426 |
| Cow position: | chr17:20848770-20848537 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 25, 12 |
| Conread position: | 202-428 |
| Cow position: | chr17:11215647-11215876 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 73, 41 |
| Conread position: | 202-428 |
| Cow position: | chr17:11831872-11832103 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 92, 43 |
| Conread position: | 203-399 |
| Cow position: | chr17:25511487-25511286 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 11 |
| Conread position: | 203-427 |
| Cow position: | chr17:26448789-26448558 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 17, 41 |
| Conread position: | 203-428 |
| Cow position: | chr17:5288410-5288179 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 10, 41 |
| Conread position: | 203-428 |
| Cow position: | chr17:9935558-9935795 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 18, 41 |
| Conread position: | 203-428 |
| Cow position: | chr17:14025661-14025899 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 25, 41 |
| Conread position: | 204-393 |
| Cow position: | chr17:11055922-11056114 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 9, 43 |
| Conread position: | 204-403 |
| Cow position: | chr17:21718753-21718960 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 78, 38 |
| Conread position: | 204-412 |
| Cow position: | chr17:18202005-18201785 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 77, 38 |
| Conread position: | 204-425 |
| Cow position: | chr17:14004069-14003838 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 9, 124 |
| Conread position: | 204-425 |
| Cow position: | chr17:20992793-20993022 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 16, 42 |
| Conread position: | 204-428 |
| Cow position: | chr17:31856917-31856685 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 17, 39 |
| Conread position: | 205-427 |
| Cow position: | chr17:24841940-24841708 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 91, 38 |
| Conread position: | 205-427 |
| Cow position: | chr17:24883327-24883558 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 86, 37 |
| Conread position: | 206-397 |
| Cow position: | chr17:39964119-39963920 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 90, 8 |
| Conread position: | 206-399 |
| Cow position: | chr17:10410873-10410688 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 98, 38 |
| Conread position: | 206-412 |
| Cow position: | chr17:20234438-20234241 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 74, 38 |
| Conread position: | 206-424 |
| Cow position: | chr17:34835883-34836092 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 100, 36 |
| Conread position: | 206-425 |
| Cow position: | chr17:20904865-20905084 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 91, 37 |
| Conread position: | 206-425 |
| Cow position: | chr17:33933506-33933730 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 37 |
| Conread position: | 206-426 |
| Cow position: | chr17:25342498-25342727 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 74, 37 |
| Conread position: | 206-428 |
| Cow position: | chr17:33275517-33275736 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 100, 36 |
| Conread position: | 207-387 |
| Cow position: | chr17:19471531-19471718 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 6, 37 |
| Conread position: | 207-426 |
| Cow position: | chr17:9932070-9932286 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 99, 36 |
| Conread position: | 207-426 |
| Cow position: | chr17:25587223-25587442 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 94, 37 |
| Conread position: | 207-427 |
| Cow position: | chr17:17222584-17222353 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 97, 7 |
| Conread position: | 207-427 |
| Cow position: | chr17:25118128-25117897 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 73, 36 |
| Conread position: | 207-427 |
| Cow position: | chr17:36814606-36814374 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 89, 36 |
| Conread position: | 208-398 |
| Cow position: | chr17:32978697-32978892 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 75, 35 |
| Conread position: | 208-427 |
| Cow position: | chr17:6423994-6423777 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 156, 35 |
| Conread position: | 208-427 |
| Cow position: | chr17:7143097-7142874 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 90, 35 |
| Conread position: | 208-428 |
| Cow position: | chr17:15355174-15354943 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 100, 34 |
| Conread position: | 211-428 |
| Cow position: | chr17:11296876-11296661 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 95, 32 |
| Conread position: | 213-428 |
| Cow position: | chr17:24862690-24862470 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 77, 30 |
| Conread position: | 214-412 |
| Cow position: | chr17:18267494-18267290 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 103, 29 |
| Conread position: | 214-428 |
| Cow position: | chr17:20199119-20199328 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 72, 29 |
| Conread position: | 215-427 |
| Cow position: | chr17:18818795-18818581 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 78, 27 |
| Conread position: | 219-425 |
| Cow position: | chr17:5514986-5514775 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 65, 24 |
| Conread position: | 219-426 |
| Cow position: | chr17:30529318-30529531 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 24, 107 |
| Conread position: | 220-363 |
| Cow position: | chr17:38736659-38736516 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 75, 23 |
| Conread position: | 225-427 |
| Cow position: | chr17:5012845-5013062 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 40, 18 |
| Conread position: | 232-425 |
| Cow position: | chr17:6329328-6329130 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 50, 11 |
| Conread position: | 246-423 |
| Cow position: | chr17:30665475-30665289 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 246-427 |
| Cow position: | chr17:18860536-18860708 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 73, 40 |
| Conread position: | 270-425 |
| Cow position: | chr17:38263321-38263475 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 25, 10 |
| Conread position: | 275-418 |
| Cow position: | chr17:37430340-37430483 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 46 |
| Conread position: | 275-427 |
| Cow position: | chr17:7590298-7590450 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 32, 46 |
| Conread position: | 293-425 |
| Cow position: | chr17:27202899-27203031 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 14, 28 |
| Conread position: | 294-423 |
| Cow position: | chr17:3067713-3067842 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 27 |
| Conread position: | 297-426 |
| Cow position: | chr17:28814351-28814479 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 70, 23 |
Show alignments to all cow chromosomes.