Cow genome map
| Conread name: | rcbl_0686.y1 |
| Conread position: | 173-427 |
| Cow position: | chr19:2068486-2068228 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 113, 41 |
| Conread position: | 174-372 |
| Cow position: | chr19:7794872-7794669 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 140, 69 |
| Conread position: | 180-387 |
| Cow position: | chr19:2137612-2137824 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 106, 62 |
| Conread position: | 184-423 |
| Cow position: | chr19:18504954-18505203 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 106, 59 |
| Conread position: | 186-428 |
| Cow position: | chr19:25570799-25570558 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 100, 14 |
| Conread position: | 189-427 |
| Cow position: | chr19:55247844-55247594 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 17, 143 |
| Conread position: | 193-413 |
| Cow position: | chr19:38021647-38021419 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 26, 52 |
| Conread position: | 195-428 |
| Cow position: | chr19:30007387-30007152 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 184 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 18, 45 |
| Conread position: | 197-427 |
| Cow position: | chr19:34166567-34166332 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 93, 46 |
| Conread position: | 199-428 |
| Cow position: | chr19:33912427-33912664 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 11, 48 |
| Conread position: | 200-361 |
| Cow position: | chr19:10172526-10172365 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 86, 43 |
| Conread position: | 200-426 |
| Cow position: | chr19:23304293-23304526 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 78, 41 |
| Conread position: | 201-393 |
| Cow position: | chr19:7594960-7595148 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 15, 43 |
| Conread position: | 201-403 |
| Cow position: | chr19:10574071-10574284 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 115, 42 |
| Conread position: | 201-410 |
| Cow position: | chr19:40126970-40127188 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 80, 42 |
| Conread position: | 201-412 |
| Cow position: | chr19:12093557-12093335 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 77, 40 |
| Conread position: | 201-425 |
| Cow position: | chr19:729552-729779 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 12, 39 |
| Conread position: | 201-425 |
| Cow position: | chr19:8864939-8864712 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 201-425 |
| Cow position: | chr19:36845440-36845213 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 93, 42 |
| Conread position: | 201-426 |
| Cow position: | chr19:10597679-10597462 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 121, 23 |
| Conread position: | 201-426 |
| Cow position: | chr19:13121090-13121312 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 15, 42 |
| Conread position: | 201-426 |
| Cow position: | chr19:37466866-37467099 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 83, 40 |
| Conread position: | 201-426 |
| Cow position: | chr19:43413974-43413743 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 89, 42 |
| Conread position: | 201-427 |
| Cow position: | chr19:2220877-2221114 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 89, 42 |
| Conread position: | 201-427 |
| Cow position: | chr19:4297880-4297648 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 201-427 |
| Cow position: | chr19:10970913-10971136 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 111, 42 |
| Conread position: | 201-427 |
| Cow position: | chr19:17355054-17354819 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 113, 42 |
| Conread position: | 201-427 |
| Cow position: | chr19:23831544-23831311 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 95, 168 |
| Conread position: | 201-427 |
| Cow position: | chr19:26167720-26167951 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 92, 43 |
| Conread position: | 201-428 |
| Cow position: | chr19:10755496-10755270 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 88, 42 |
| Conread position: | 201-428 |
| Cow position: | chr19:30471162-30471394 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 91, 42 |
| Conread position: | 201-428 |
| Cow position: | chr19:39795385-39795150 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 202-355 |
| Cow position: | chr19:20687215-20687071 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 202-363 |
| Cow position: | chr19:30384902-30385067 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 11, 42 |
| Conread position: | 202-399 |
| Cow position: | chr19:52356446-52356241 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 75, 41 |
| Conread position: | 202-412 |
| Cow position: | chr19:10985277-10985074 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 11, 42 |
| Conread position: | 202-426 |
| Cow position: | chr19:21176552-21176779 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 73, 41 |
| Conread position: | 202-427 |
| Cow position: | chr19:13267012-13267227 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 80, 41 |
| Conread position: | 203-361 |
| Cow position: | chr19:42575340-42575182 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 97, 40 |
| Conread position: | 203-375 |
| Cow position: | chr19:41188029-41187852 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 76, 40 |
| Conread position: | 203-380 |
| Cow position: | chr19:7558739-7558554 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 114, 39 |
| Conread position: | 203-394 |
| Cow position: | chr19:29958495-29958684 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 95, 40 |
| Conread position: | 203-425 |
| Cow position: | chr19:6532067-6531850 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 111, 39 |
| Conread position: | 203-426 |
| Cow position: | chr19:17824288-17824514 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 81, 17 |
| Conread position: | 204-412 |
| Cow position: | chr19:32437712-32437921 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 97, 39 |
| Conread position: | 204-412 |
| Cow position: | chr19:33903234-33903447 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 204-412 |
| Cow position: | chr19:49221429-49221645 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 16, 51 |
| Conread position: | 204-427 |
| Cow position: | chr19:49290266-49290492 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 84, 39 |
| Conread position: | 205-391 |
| Cow position: | chr19:6093665-6093481 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 158, 38 |
| Conread position: | 205-414 |
| Cow position: | chr19:24933340-24933549 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 82, 38 |
| Conread position: | 206-425 |
| Cow position: | chr19:54943158-54942932 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 13, 38 |
| Conread position: | 206-427 |
| Cow position: | chr19:42564336-42564106 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 77, 11 |
| Conread position: | 206-428 |
| Cow position: | chr19:14253825-14253592 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 89, 34 |
| Conread position: | 207-412 |
| Cow position: | chr19:37067322-37067116 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 80, 35 |
| Conread position: | 207-418 |
| Cow position: | chr19:20378846-20379062 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 75, 19 |
| Conread position: | 207-422 |
| Cow position: | chr19:37406105-37405883 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 67, 37 |
| Conread position: | 207-423 |
| Cow position: | chr19:25665770-25665555 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 83, 32 |
| Conread position: | 207-425 |
| Cow position: | chr19:13325309-13325522 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 156, 35 |
| Conread position: | 207-427 |
| Cow position: | chr19:4459252-4459479 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 13, 39 |
| Conread position: | 207-427 |
| Cow position: | chr19:51620988-51621223 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 84, 35 |
| Conread position: | 208-423 |
| Cow position: | chr19:35107741-35107961 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 208-428 |
| Cow position: | chr19:35921039-35920813 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 88, 35 |
| Conread position: | 209-413 |
| Cow position: | chr19:8185392-8185178 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 105, 34 |
| Conread position: | 209-413 |
| Cow position: | chr19:30227709-30227495 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 106, 16 |
| Conread position: | 209-421 |
| Cow position: | chr19:39664388-39664609 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 105, 32 |
| Conread position: | 213-427 |
| Cow position: | chr19:26975888-26976106 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 59, 30 |
| Conread position: | 214-393 |
| Cow position: | chr19:5521976-5522160 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 72, 29 |
| Conread position: | 216-425 |
| Cow position: | chr19:25526459-25526247 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 78, 30 |
| Conread position: | 219-413 |
| Cow position: | chr19:6854109-6854304 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 64, 22 |
| Conread position: | 219-424 |
| Cow position: | chr19:20935930-20935718 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 24 |
| Conread position: | 220-427 |
| Cow position: | chr19:21817142-21816928 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 95, 25 |
| Conread position: | 221-391 |
| Cow position: | chr19:22012493-22012327 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 142, 22 |
| Conread position: | 229-427 |
| Cow position: | chr19:39613005-39613204 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 61, 14 |
| Conread position: | 243-427 |
| Cow position: | chr19:32457798-32457603 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 85 |
| Conread position: | 249-426 |
| Cow position: | chr19:15362549-15362738 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 275-422 |
| Cow position: | chr19:7675347-7675200 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 46 |
| Conread position: | 294-428 |
| Cow position: | chr19:33237268-33237134 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 13, 27 |
| Conread position: | 295-427 |
| Cow position: | chr19:42236120-42235989 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 68, 23 |
Show alignments to all cow chromosomes.