Cow genome map
| Conread name: | rcbl_0686.y1 |
| Conread position: | 172-395 |
| Cow position: | chr21:30976969-30977188 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 189-427 |
| Cow position: | chr21:957953-957709 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 19, 55 |
| Conread position: | 190-427 |
| Cow position: | chr21:22121782-22121546 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 100, 5 |
| Conread position: | 192-412 |
| Cow position: | chr21:6851445-6851223 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 16, 51 |
| Conread position: | 192-427 |
| Cow position: | chr21:28244745-28244507 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 94, 22 |
| Conread position: | 193-412 |
| Cow position: | chr21:37928930-37928700 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 20, 51 |
| Conread position: | 195-373 |
| Cow position: | chr21:742552-742368 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 10, 50 |
| Conread position: | 195-426 |
| Cow position: | chr21:3763476-3763705 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 96, 19 |
| Conread position: | 195-428 |
| Cow position: | chr21:7768715-7768473 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 46, 135 |
| Conread position: | 199-393 |
| Cow position: | chr21:15869959-15869760 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 92, 46 |
| Conread position: | 199-425 |
| Cow position: | chr21:641856-641625 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 91, 43 |
| Conread position: | 200-427 |
| Cow position: | chr21:15543968-15544184 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 88, 44 |
| Conread position: | 200-427 |
| Cow position: | chr21:16152711-16152476 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 100, 43 |
| Conread position: | 201-350 |
| Cow position: | chr21:30359079-30359231 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 201-361 |
| Cow position: | chr21:21145658-21145500 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 104, 41 |
| Conread position: | 201-361 |
| Cow position: | chr21:32536661-32536499 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 90, 42 |
| Conread position: | 201-380 |
| Cow position: | chr21:27521071-27521256 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 19, 27 |
| Conread position: | 201-423 |
| Cow position: | chr21:19703000-19702771 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 75, 40 |
| Conread position: | 201-423 |
| Cow position: | chr21:38901034-38900814 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 19, 43 |
| Conread position: | 201-425 |
| Cow position: | chr21:12154395-12154169 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 128, 42 |
| Conread position: | 201-427 |
| Cow position: | chr21:6051775-6051539 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 35, 43 |
| Conread position: | 201-427 |
| Cow position: | chr21:12461699-12461931 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 84, 122 |
| Conread position: | 201-427 |
| Cow position: | chr21:21907171-21907392 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 28, 41 |
| Conread position: | 201-427 |
| Cow position: | chr21:27677753-27677518 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 113, 42 |
| Conread position: | 201-427 |
| Cow position: | chr21:28919260-28919487 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 201-427 |
| Cow position: | chr21:42501322-42501080 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 115, 42 |
| Conread position: | 201-428 |
| Cow position: | chr21:45356085-45355870 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 106, 41 |
| Conread position: | 202-372 |
| Cow position: | chr21:18495485-18495314 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 18, 42 |
| Conread position: | 202-405 |
| Cow position: | chr21:6713255-6713467 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 98, 41 |
| Conread position: | 202-405 |
| Cow position: | chr21:32339476-32339682 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 92, 41 |
| Conread position: | 202-405 |
| Cow position: | chr21:44214380-44214185 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 105, 41 |
| Conread position: | 202-427 |
| Cow position: | chr21:4281614-4281839 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 100, 41 |
| Conread position: | 202-427 |
| Cow position: | chr21:27863249-27863477 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 11, 42 |
| Conread position: | 202-427 |
| Cow position: | chr21:36763331-36763098 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 90, 40 |
| Conread position: | 202-428 |
| Cow position: | chr21:10004614-10004850 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 112, 43 |
| Conread position: | 203-373 |
| Cow position: | chr21:29011707-29011880 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 17, 41 |
| Conread position: | 203-406 |
| Cow position: | chr21:5427195-5426997 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 92, 40 |
| Conread position: | 203-427 |
| Cow position: | chr21:8207025-8206808 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 105, 43 |
| Conread position: | 203-428 |
| Cow position: | chr21:31279521-31279291 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 82, 40 |
| Conread position: | 204-423 |
| Cow position: | chr21:23587139-23586922 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 95, 39 |
| Conread position: | 204-425 |
| Cow position: | chr21:14464854-14464618 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 16, 40 |
| Conread position: | 205-428 |
| Cow position: | chr21:71852-71622 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 96, 37 |
| Conread position: | 206-423 |
| Cow position: | chr21:32392797-32393017 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 103, 37 |
| Conread position: | 206-425 |
| Cow position: | chr21:14452498-14452272 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 90, 36 |
| Conread position: | 206-425 |
| Cow position: | chr21:23979914-23980144 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 90, 33 |
| Conread position: | 206-427 |
| Cow position: | chr21:42209380-42209593 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 161, 37 |
| Conread position: | 206-428 |
| Cow position: | chr21:44724111-44724333 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 119, 37 |
| Conread position: | 207-379 |
| Cow position: | chr21:15545098-15545277 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 35 |
| Conread position: | 207-394 |
| Cow position: | chr21:42189496-42189688 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 83, 35 |
| Conread position: | 207-398 |
| Cow position: | chr21:745434-745241 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 79, 36 |
| Conread position: | 207-426 |
| Cow position: | chr21:8713693-8713922 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 91, 35 |
| Conread position: | 207-426 |
| Cow position: | chr21:29658538-29658313 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 75, 35 |
| Conread position: | 207-427 |
| Cow position: | chr21:6834314-6834085 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 101, 39 |
| Conread position: | 207-427 |
| Cow position: | chr21:37706147-37706379 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 6, 37 |
| Conread position: | 207-427 |
| Cow position: | chr21:40134410-40134193 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 92, 36 |
| Conread position: | 207-427 |
| Cow position: | chr21:41140451-41140681 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 83, 36 |
| Conread position: | 207-427 |
| Cow position: | chr21:45970915-45971136 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 84, 36 |
| Conread position: | 207-428 |
| Cow position: | chr21:6583876-6584102 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 89, 36 |
| Conread position: | 208-424 |
| Cow position: | chr21:20153220-20152995 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 90, 34 |
| Conread position: | 208-426 |
| Cow position: | chr21:20213508-20213741 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 72, 34 |
| Conread position: | 208-426 |
| Cow position: | chr21:23535976-23535748 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 108, 204 |
| Conread position: | 208-427 |
| Cow position: | chr21:17983234-17983016 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 87, 19 |
| Conread position: | 208-427 |
| Cow position: | chr21:37837814-37838030 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 12, 36 |
| Conread position: | 208-428 |
| Cow position: | chr21:16794057-16793824 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 85, 34 |
| Conread position: | 208-428 |
| Cow position: | chr21:17890566-17890337 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 87, 38 |
| Conread position: | 211-400 |
| Cow position: | chr21:30848688-30848878 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 85, 32 |
| Conread position: | 211-427 |
| Cow position: | chr21:30231436-30231658 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 171 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 105, 32 |
| Conread position: | 214-424 |
| Cow position: | chr21:10264292-10264072 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 100, 31 |
| Conread position: | 214-426 |
| Cow position: | chr21:41621385-41621162 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 82, 28 |
| Conread position: | 214-427 |
| Cow position: | chr21:23568482-23568260 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 72, 37 |
| Conread position: | 214-427 |
| Cow position: | chr21:24797912-24797693 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 63, 28 |
| Conread position: | 214-427 |
| Cow position: | chr21:29014660-29014874 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 71, 29 |
| Conread position: | 219-425 |
| Cow position: | chr21:17193496-17193713 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 79, 24 |
| Conread position: | 220-427 |
| Cow position: | chr21:34151827-34151622 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 82, 22 |
| Conread position: | 220-427 |
| Cow position: | chr21:41287545-41287757 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 63, 23 |
| Conread position: | 220-428 |
| Cow position: | chr21:41107525-41107737 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 41, 26 |
| Conread position: | 222-428 |
| Cow position: | chr21:3360767-3360978 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 80, 20 |
| Conread position: | 230-427 |
| Cow position: | chr21:7377682-7377890 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 83, 13 |
| Conread position: | 242-413 |
| Cow position: | chr21:6735963-6736139 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 84 |
| Conread position: | 243-426 |
| Cow position: | chr21:7221119-7221303 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 12, 81 |
| Conread position: | 246-425 |
| Cow position: | chr21:9416476-9416288 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 83 |
| Conread position: | 246-427 |
| Cow position: | chr21:17642763-17642948 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 41, 78 |
| Conread position: | 247-394 |
| Cow position: | chr21:13043800-13043951 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 43, 77 |
| Conread position: | 297-424 |
| Cow position: | chr21:13164024-13163898 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 69, 23 |
| Conread position: | 297-427 |
| Cow position: | chr21:10001240-10001111 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 58, 23 |
Show alignments to all cow chromosomes.