Cow genome map
| Conread name: | rcbl_0686.y1 |
| Conread position: | 154-427 |
| Cow position: | chr23:23904089-23904353 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 6, 24 |
| Conread position: | 189-363 |
| Cow position: | chr23:22205378-22205551 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 55 |
| Conread position: | 190-378 |
| Cow position: | chr23:18489873-18489680 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 54 |
| Conread position: | 195-428 |
| Cow position: | chr23:22414093-22414326 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 25, 49 |
| Conread position: | 196-427 |
| Cow position: | chr23:7696755-7696533 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 168, 44 |
| Conread position: | 198-425 |
| Cow position: | chr23:6449994-6450226 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 21, 51 |
| Conread position: | 199-307 |
| Cow position: | chr23:30617264-30617372 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 199-413 |
| Cow position: | chr23:16447482-16447698 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 7, 45 |
| Conread position: | 199-427 |
| Cow position: | chr23:3234566-3234807 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 15, 45 |
| Conread position: | 199-427 |
| Cow position: | chr23:5436429-5436668 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 110, 44 |
| Conread position: | 199-428 |
| Cow position: | chr23:15743301-15743065 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 85, 15 |
| Conread position: | 200-425 |
| Cow position: | chr23:16582700-16582933 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 114, 14 |
| Conread position: | 200-426 |
| Cow position: | chr23:18823194-18822965 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 91, 45 |
| Conread position: | 200-427 |
| Cow position: | chr23:39753311-39753091 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 169, 22 |
| Conread position: | 201-380 |
| Cow position: | chr23:1277053-1276875 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 201-412 |
| Cow position: | chr23:17597631-17597416 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 89, 38 |
| Conread position: | 201-417 |
| Cow position: | chr23:5686426-5686637 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 165, 21 |
| Conread position: | 201-424 |
| Cow position: | chr23:40781522-40781308 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 201-425 |
| Cow position: | chr23:18901857-18902075 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 201-425 |
| Cow position: | chr23:24704492-24704261 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 93, 39 |
| Conread position: | 201-426 |
| Cow position: | chr23:3244705-3244938 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 201-426 |
| Cow position: | chr23:5732746-5732525 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 105, 38 |
| Conread position: | 201-427 |
| Cow position: | chr23:187389-187153 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 201-427 |
| Cow position: | chr23:3890363-3890596 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 95, 39 |
| Conread position: | 201-427 |
| Cow position: | chr23:4727001-4726769 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 90, 42 |
| Conread position: | 201-427 |
| Cow position: | chr23:17484647-17484865 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 201-427 |
| Cow position: | chr23:40542061-40542290 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 112, 42 |
| Conread position: | 201-428 |
| Cow position: | chr23:1438487-1438265 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 162, 89 |
| Conread position: | 201-428 |
| Cow position: | chr23:38974043-38973824 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 201-428 |
| Cow position: | chr23:40122760-40122535 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 67, 31 |
| Conread position: | 201-428 |
| Cow position: | chr23:40790174-40789947 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 85, 42 |
| Conread position: | 202-378 |
| Cow position: | chr23:32479809-32479993 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 89, 41 |
| Conread position: | 202-427 |
| Cow position: | chr23:20557634-20557870 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 112, 40 |
| Conread position: | 202-427 |
| Cow position: | chr23:26794704-26794937 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 11, 40 |
| Conread position: | 203-393 |
| Cow position: | chr23:39248193-39248379 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 88, 36 |
| Conread position: | 203-413 |
| Cow position: | chr23:14895481-14895685 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 104, 42 |
| Conread position: | 203-426 |
| Cow position: | chr23:1725550-1725329 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 10, 38 |
| Conread position: | 203-428 |
| Cow position: | chr23:7709989-7709764 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 94, 40 |
| Conread position: | 204-342 |
| Cow position: | chr23:18710266-18710398 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 102, 38 |
| Conread position: | 204-409 |
| Cow position: | chr23:21423972-21423760 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 77, 39 |
| Conread position: | 204-423 |
| Cow position: | chr23:35930154-35929929 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 73, 39 |
| Conread position: | 204-426 |
| Cow position: | chr23:3522951-3522727 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 11, 129 |
| Conread position: | 205-388 |
| Cow position: | chr23:11369426-11369242 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 8, 35 |
| Conread position: | 205-420 |
| Cow position: | chr23:26949397-26949178 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 15, 38 |
| Conread position: | 205-425 |
| Cow position: | chr23:20388460-20388674 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 15, 38 |
| Conread position: | 205-426 |
| Cow position: | chr23:18691969-18692202 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 81, 42 |
| Conread position: | 205-428 |
| Cow position: | chr23:10416222-10416447 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 15, 39 |
| Conread position: | 206-423 |
| Cow position: | chr23:4968327-4968545 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 110, 36 |
| Conread position: | 206-427 |
| Cow position: | chr23:12091156-12091386 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 77, 29 |
| Conread position: | 206-427 |
| Cow position: | chr23:13137735-13137961 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 80, 37 |
| Conread position: | 206-427 |
| Cow position: | chr23:34356845-34356616 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 75, 37 |
| Conread position: | 206-428 |
| Cow position: | chr23:18322244-18322449 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 207-424 |
| Cow position: | chr23:29345574-29345786 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 87, 36 |
| Conread position: | 207-426 |
| Cow position: | chr23:15286948-15287162 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 155, 36 |
| Conread position: | 207-426 |
| Cow position: | chr23:36200603-36200386 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 6, 37 |
| Conread position: | 207-427 |
| Cow position: | chr23:38234-37996 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 6, 37 |
| Conread position: | 207-427 |
| Cow position: | chr23:11225057-11224830 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 89, 36 |
| Conread position: | 207-428 |
| Cow position: | chr23:1337104-1337330 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 107, 35 |
| Conread position: | 207-428 |
| Cow position: | chr23:40444059-40443834 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 86, 36 |
| Conread position: | 208-405 |
| Cow position: | chr23:809709-809502 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 83, 35 |
| Conread position: | 208-412 |
| Cow position: | chr23:40348444-40348655 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 75, 34 |
| Conread position: | 208-427 |
| Cow position: | chr23:11081461-11081231 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 5, 36 |
| Conread position: | 208-427 |
| Cow position: | chr23:40081701-40081488 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 98, 34 |
| Conread position: | 208-428 |
| Cow position: | chr23:24685442-24685218 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 71, 35 |
| Conread position: | 211-427 |
| Cow position: | chr23:283203-283418 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 88, 29 |
| Conread position: | 211-427 |
| Cow position: | chr23:38732430-38732224 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 97, 32 |
| Conread position: | 212-391 |
| Cow position: | chr23:22826255-22826430 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 95, 31 |
| Conread position: | 214-394 |
| Cow position: | chr23:10888464-10888282 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 76, 29 |
| Conread position: | 214-413 |
| Cow position: | chr23:18739265-18739476 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 94, 29 |
| Conread position: | 215-428 |
| Cow position: | chr23:5436806-5437029 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 82, 28 |
| Conread position: | 216-424 |
| Cow position: | chr23:11129430-11129211 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 29 |
| Conread position: | 219-423 |
| Cow position: | chr23:1536511-1536299 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 67, 21 |
| Conread position: | 220-428 |
| Cow position: | chr23:5603107-5603311 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 69, 22 |
| Conread position: | 221-421 |
| Cow position: | chr23:31970361-31970553 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 85, 22 |
| Conread position: | 222-373 |
| Cow position: | chr23:13410572-13410727 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 101, 21 |
| Conread position: | 242-427 |
| Cow position: | chr23:20563866-20563672 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 54, 190 |
| Conread position: | 243-421 |
| Cow position: | chr23:1701342-1701152 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 90 |
| Conread position: | 246-380 |
| Cow position: | chr23:18417250-18417114 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 42, 77 |
| Conread position: | 246-428 |
| Cow position: | chr23:23409887-23409707 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 61, 39 |
| Conread position: | 270-427 |
| Cow position: | chr23:36309548-36309397 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 94, 25 |
Show alignments to all cow chromosomes.