Cow genome map
| Conread name: | rcbl_0686.y1 |
| Conread position: | 162-374 |
| Cow position: | chr24:885222-885441 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 83 |
| Conread position: | 177-424 |
| Cow position: | chr24:27906643-27906388 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 137, 37 |
| Conread position: | 186-427 |
| Cow position: | chr24:3166016-3165766 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 115, 46 |
| Conread position: | 189-398 |
| Cow position: | chr24:18730541-18730321 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 10 |
| Conread position: | 190-428 |
| Cow position: | chr24:10031769-10031531 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 11, 58 |
| Conread position: | 194-361 |
| Cow position: | chr24:26588408-26588235 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 23, 50 |
| Conread position: | 195-413 |
| Cow position: | chr24:13586802-13587030 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 18, 49 |
| Conread position: | 197-427 |
| Cow position: | chr24:2402191-2402420 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 104, 44 |
| Conread position: | 199-407 |
| Cow position: | chr24:29260371-29260157 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 199-418 |
| Cow position: | chr24:30483761-30483991 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 87, 15 |
| Conread position: | 199-424 |
| Cow position: | chr24:28599691-28599909 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 164, 21 |
| Conread position: | 199-426 |
| Cow position: | chr24:21606491-21606724 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 9, 45 |
| Conread position: | 199-428 |
| Cow position: | chr24:23000186-22999965 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 21, 45 |
| Conread position: | 200-405 |
| Cow position: | chr24:19187115-19186912 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 91, 43 |
| Conread position: | 200-421 |
| Cow position: | chr24:6739991-6740214 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 27, 44 |
| Conread position: | 200-428 |
| Cow position: | chr24:28600255-28600489 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 75, 38 |
| Conread position: | 201-378 |
| Cow position: | chr24:18541275-18541453 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 114, 41 |
| Conread position: | 201-380 |
| Cow position: | chr24:25970902-25971079 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 93, 41 |
| Conread position: | 201-380 |
| Cow position: | chr24:36554518-36554703 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 201-392 |
| Cow position: | chr24:11028504-11028706 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 201-392 |
| Cow position: | chr24:40592895-40592694 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 85, 42 |
| Conread position: | 201-394 |
| Cow position: | chr24:27810331-27810139 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 81, 43 |
| Conread position: | 201-394 |
| Cow position: | chr24:31383291-31383101 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 12, 40 |
| Conread position: | 201-397 |
| Cow position: | chr24:2261852-2261645 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 114, 42 |
| Conread position: | 201-403 |
| Cow position: | chr24:32890864-32891072 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 30 |
| Conread position: | 201-405 |
| Cow position: | chr24:5152708-5152493 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 108, 42 |
| Conread position: | 201-409 |
| Cow position: | chr24:36286750-36286535 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 76, 42 |
| Conread position: | 201-412 |
| Cow position: | chr24:17308959-17309174 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 81, 41 |
| Conread position: | 201-425 |
| Cow position: | chr24:14550973-14550745 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 201-425 |
| Cow position: | chr24:27202269-27202039 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 14, 127 |
| Conread position: | 201-425 |
| Cow position: | chr24:30229656-30229423 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 85, 42 |
| Conread position: | 201-427 |
| Cow position: | chr24:19000225-18999995 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 95, 42 |
| Conread position: | 201-427 |
| Cow position: | chr24:22079645-22079411 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 94, 42 |
| Conread position: | 201-428 |
| Cow position: | chr24:29587183-29586944 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 202-427 |
| Cow position: | chr24:27844352-27844580 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 80, 41 |
| Conread position: | 203-380 |
| Cow position: | chr24:27279683-27279511 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 95, 41 |
| Conread position: | 203-406 |
| Cow position: | chr24:21834783-21834990 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 78, 40 |
| Conread position: | 203-424 |
| Cow position: | chr24:11840364-11840138 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 80, 39 |
| Conread position: | 204-428 |
| Cow position: | chr24:37974804-37975034 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 86, 128 |
| Conread position: | 205-412 |
| Cow position: | chr24:43219901-43220110 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 103, 34 |
| Conread position: | 205-413 |
| Cow position: | chr24:24755607-24755409 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 101, 30 |
| Conread position: | 205-420 |
| Cow position: | chr24:2730447-2730657 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 10, 40 |
| Conread position: | 205-427 |
| Cow position: | chr24:390278-390052 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 80, 37 |
| Conread position: | 205-427 |
| Cow position: | chr24:17104393-17104623 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 15, 35 |
| Conread position: | 205-427 |
| Cow position: | chr24:34396012-34396228 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 102, 40 |
| Conread position: | 206-380 |
| Cow position: | chr24:13215842-13216015 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 102, 39 |
| Conread position: | 207-380 |
| Cow position: | chr24:20017249-20017433 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 89, 36 |
| Conread position: | 207-393 |
| Cow position: | chr24:16510147-16509959 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 84, 22 |
| Conread position: | 207-404 |
| Cow position: | chr24:27066406-27066201 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 101, 36 |
| Conread position: | 207-424 |
| Cow position: | chr24:2992703-2992928 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 13, 37 |
| Conread position: | 207-428 |
| Cow position: | chr24:19801015-19800794 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 79, 36 |
| Conread position: | 207-428 |
| Cow position: | chr24:41406070-41405837 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 37, 122 |
| Conread position: | 208-425 |
| Cow position: | chr24:24532346-24532130 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 77, 34 |
| Conread position: | 208-426 |
| Cow position: | chr24:37651896-37651674 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 83, 110 |
| Conread position: | 208-427 |
| Cow position: | chr24:26001562-26001335 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 88, 36 |
| Conread position: | 208-428 |
| Cow position: | chr24:16995053-16994829 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 91, 35 |
| Conread position: | 208-428 |
| Cow position: | chr24:20801170-20801399 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 88, 34 |
| Conread position: | 209-394 |
| Cow position: | chr24:18874646-18874840 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 105, 34 |
| Conread position: | 211-412 |
| Cow position: | chr24:19637759-19637546 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 10, 32 |
| Conread position: | 214-411 |
| Cow position: | chr24:5360880-5360683 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 80, 29 |
| Conread position: | 214-427 |
| Cow position: | chr24:28722046-28721837 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 72, 29 |
| Conread position: | 216-428 |
| Cow position: | chr24:24490858-24491070 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 70, 27 |
| Conread position: | 216-428 |
| Cow position: | chr24:33944573-33944349 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 65, 27 |
| Conread position: | 218-426 |
| Cow position: | chr24:42876735-42876941 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 89, 25 |
| Conread position: | 219-427 |
| Cow position: | chr24:17751944-17752163 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 73, 24 |
| Conread position: | 219-427 |
| Cow position: | chr24:44987208-44987427 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 79, 24 |
| Conread position: | 220-378 |
| Cow position: | chr24:21102562-21102405 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 70, 22 |
| Conread position: | 220-428 |
| Cow position: | chr24:23556174-23556391 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 66, 23 |
| Conread position: | 220-428 |
| Cow position: | chr24:39523287-39523502 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 70, 23 |
| Conread position: | 225-406 |
| Cow position: | chr24:44040853-44041036 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 61, 17 |
| Conread position: | 230-426 |
| Cow position: | chr24:16645165-16645371 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 60, 13 |
| Conread position: | 246-425 |
| Cow position: | chr24:32054791-32054611 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 37, 87 |
| Conread position: | 246-428 |
| Cow position: | chr24:16895009-16895184 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 61, 75 |
| Conread position: | 260-427 |
| Cow position: | chr24:7046634-7046801 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 33, 17 |
| Conread position: | 278-412 |
| Cow position: | chr24:23616795-23616659 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 46 |
| Conread position: | 294-427 |
| Cow position: | chr24:32071042-32070911 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 12, 27 |
Show alignments to all cow chromosomes.