Cow genome map
| Conread name: | rcbl_0686.y1 |
| Conread position: | 149-296 |
| Cow position: | chr29:29363860-29363712 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 195-380 |
| Cow position: | chr29:14746990-14746797 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 51 |
| Conread position: | 195-398 |
| Cow position: | chr29:18878275-18878482 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 119, 19 |
| Conread position: | 199-307 |
| Cow position: | chr29:34483418-34483525 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 199-394 |
| Cow position: | chr29:5064971-5064785 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 92, 40 |
| Conread position: | 199-422 |
| Cow position: | chr29:37618516-37618280 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 17, 45 |
| Conread position: | 200-378 |
| Cow position: | chr29:37293233-37293058 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 95, 43 |
| Conread position: | 200-405 |
| Cow position: | chr29:29308376-29308579 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 95, 43 |
| Conread position: | 200-413 |
| Cow position: | chr29:34359618-34359836 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 45 |
| Conread position: | 200-425 |
| Cow position: | chr29:16279183-16278960 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 115, 43 |
| Conread position: | 200-427 |
| Cow position: | chr29:27819411-27819189 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 107, 47 |
| Conread position: | 201-327 |
| Cow position: | chr29:4741184-4741310 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 97, 42 |
| Conread position: | 201-362 |
| Cow position: | chr29:23678906-23678745 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 102, 42 |
| Conread position: | 201-379 |
| Cow position: | chr29:16657895-16657717 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 91, 13 |
| Conread position: | 201-411 |
| Cow position: | chr29:31651607-31651397 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 90, 42 |
| Conread position: | 201-412 |
| Cow position: | chr29:38754732-38754954 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 201-413 |
| Cow position: | chr29:19176710-19176929 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 85, 40 |
| Conread position: | 201-427 |
| Cow position: | chr29:23825868-23825640 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 43 |
| Conread position: | 201-427 |
| Cow position: | chr29:23874668-23874430 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 201-427 |
| Cow position: | chr29:31982025-31981801 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 93, 13 |
| Conread position: | 201-427 |
| Cow position: | chr29:32733507-32733269 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 35, 129 |
| Conread position: | 201-427 |
| Cow position: | chr29:35292292-35292062 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 12, 45 |
| Conread position: | 201-427 |
| Cow position: | chr29:41531057-41530820 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 202-425 |
| Cow position: | chr29:7310867-7310649 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 106, 41 |
| Conread position: | 202-427 |
| Cow position: | chr29:4070825-4070598 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 18, 41 |
| Conread position: | 203-397 |
| Cow position: | chr29:19420417-19420613 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 83, 36 |
| Conread position: | 203-398 |
| Cow position: | chr29:14577060-14576858 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 93, 40 |
| Conread position: | 203-426 |
| Cow position: | chr29:5789218-5788999 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 104, 39 |
| Conread position: | 203-426 |
| Cow position: | chr29:22028758-22028983 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 89, 37 |
| Conread position: | 203-428 |
| Cow position: | chr29:23698173-23697946 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 83, 34 |
| Conread position: | 204-326 |
| Cow position: | chr29:1886378-1886499 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 102, 38 |
| Conread position: | 204-401 |
| Cow position: | chr29:43088509-43088307 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 16, 40 |
| Conread position: | 204-412 |
| Cow position: | chr29:19949507-19949294 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 87, 39 |
| Conread position: | 204-427 |
| Cow position: | chr29:17297340-17297106 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 110, 39 |
| Conread position: | 205-426 |
| Cow position: | chr29:18449937-18450164 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 97, 38 |
| Conread position: | 205-426 |
| Cow position: | chr29:31934578-31934350 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 15, 38 |
| Conread position: | 205-427 |
| Cow position: | chr29:26779078-26778853 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 15, 39 |
| Conread position: | 206-406 |
| Cow position: | chr29:36781110-36781313 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 85, 48 |
| Conread position: | 206-423 |
| Cow position: | chr29:4423252-4423465 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 88, 12 |
| Conread position: | 206-426 |
| Cow position: | chr29:26540340-26540569 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 89, 36 |
| Conread position: | 206-428 |
| Cow position: | chr29:17462579-17462816 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 206-428 |
| Cow position: | chr29:22068542-22068771 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 109, 9 |
| Conread position: | 207-418 |
| Cow position: | chr29:28979317-28979519 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 98, 30 |
| Conread position: | 207-423 |
| Cow position: | chr29:2056259-2056035 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 207-426 |
| Cow position: | chr29:35084024-35084251 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 89, 33 |
| Conread position: | 208-412 |
| Cow position: | chr29:39111125-39111326 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 11, 36 |
| Conread position: | 208-425 |
| Cow position: | chr29:3685323-3685547 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 86, 35 |
| Conread position: | 208-426 |
| Cow position: | chr29:396600-396384 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 74, 35 |
| Conread position: | 208-427 |
| Cow position: | chr29:31929185-31928959 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 12, 36 |
| Conread position: | 208-428 |
| Cow position: | chr29:5520286-5520516 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 106, 35 |
| Conread position: | 208-428 |
| Cow position: | chr29:28195335-28195546 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 98, 35 |
| Conread position: | 209-380 |
| Cow position: | chr29:11489398-11489563 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 209-399 |
| Cow position: | chr29:4441008-4441207 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 87, 34 |
| Conread position: | 214-391 |
| Cow position: | chr29:26539423-26539241 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 74, 29 |
| Conread position: | 214-427 |
| Cow position: | chr29:3293135-3292918 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 85, 29 |
| Conread position: | 214-428 |
| Cow position: | chr29:7955796-7956021 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 76, 29 |
| Conread position: | 214-428 |
| Cow position: | chr29:30441131-30440903 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 84, 29 |
| Conread position: | 225-427 |
| Cow position: | chr29:17154943-17154749 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 82, 17 |
| Conread position: | 232-426 |
| Cow position: | chr29:44684271-44684074 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 11 |
| Conread position: | 243-425 |
| Cow position: | chr29:30713553-30713737 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 268-427 |
| Cow position: | chr29:13639233-13639397 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 27, 57 |
| Conread position: | 275-426 |
| Cow position: | chr29:30918671-30918520 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 46 |
| Conread position: | 295-425 |
| Cow position: | chr29:11053758-11053887 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 12, 26 |
| Conread position: | 297-427 |
| Cow position: | chr29:17409434-17409305 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 72, 21 |
Show alignments to all cow chromosomes.