Cow genome map

Conread name: rche01_k1.y1

Conread position: 127-331
Cow position: chr5:65201947-65201754 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 160-322
Cow position: chr5:1090594-1090760 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 132
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 15, 0

Conread position: 160-330
Cow position: chr5:29860547-29860386 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 29, 0

Conread position: 160-338
Cow position: chr5:50822005-50821829 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 47, 60

Conread position: 160-348
Cow position: chr5:6130790-6130603 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 163, 42

Conread position: 160-372
Cow position: chr5:45419915-45420131 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 170
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 167, 74

Conread position: 160-372
Cow position: chr5:59872862-59873076 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 164
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 156, 12

Conread position: 160-372
Cow position: chr5:63656703-63656483 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 164
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 34, 26

Conread position: 160-389
Cow position: chr5:1165389-1165163 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 161
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 58, 39

Conread position: 160-389
Cow position: chr5:55019506-55019281 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 170
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 165, 16

Conread position: 161-311
Cow position: chr5:19468253-19468398 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 148, 15

Conread position: 176-371
Cow position: chr5:2851800-2851602 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 51, 72

Conread position: 176-372
Cow position: chr5:30949700-30949909 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 158
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 9, 99

Conread position: 176-372
Cow position: chr5:54060486-54060284 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 156
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 68, 0

Conread position: 176-372
Cow position: chr5:58856310-58856109 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 148, 137

Conread position: 177-328
Cow position: chr5:54067834-54067986 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 80, 56

Conread position: 177-329
Cow position: chr5:61822971-61822820 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 54, 0

Conread position: 177-368
Cow position: chr5:55129548-55129353 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 153
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 148, 56

Conread position: 182-372
Cow position: chr5:63426800-63426999 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 148
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 53, 0

Conread position: 184-326
Cow position: chr5:54154004-54154144 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 24, 0

Conread position: 190-341
Cow position: chr5:66238030-66237882 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 110
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 129, 0

Conread position: 191-348
Cow position: chr5:42622987-42623147 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 138, 126

Conread position: 191-372
Cow position: chr5:4709957-4710145 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 148
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 49, 0

Conread position: 191-372
Cow position: chr5:20779204-20779389 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 29, 14

Conread position: 191-372
Cow position: chr5:43844467-43844657 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 192-348
Cow position: chr5:70353787-70353952 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 192-360
Cow position: chr5:40515084-40515267 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 50, 0

Conread position: 192-372
Cow position: chr5:27293691-27293878 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 144
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 43, 0

Conread position: 193-301
Cow position: chr5:5028919-5028812 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 193-328
Cow position: chr5:49207134-49207271 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 29, 15

Conread position: 194-372
Cow position: chr5:28230356-28230168 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 24, 29

Conread position: 195-372
Cow position: chr5:54767720-54767902 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 134, 0

Conread position: 196-371
Cow position: chr5:26723630-26723455 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 145
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 129, 37

Conread position: 197-333
Cow position: chr5:28324522-28324387 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 20, 32

Conread position: 198-372
Cow position: chr5:23678521-23678693 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 141
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 124, 35

Conread position: 199-372
Cow position: chr5:4031801-4031983 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 100, 0

Conread position: 200-370
Cow position: chr5:47696264-47696433 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 12, 131

Conread position: 200-372
Cow position: chr5:26476834-26477011 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 143
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 124, 0

Conread position: 202-365
Cow position: chr5:44726151-44726321 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 139
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 39, 67

Conread position: 202-372
Cow position: chr5:7713944-7713777 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 30, 12

Conread position: 204-371
Cow position: chr5:57489773-57489938 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 138
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 121, 29

Conread position: 207-328
Cow position: chr5:61810946-61810827 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 66, 26

Conread position: 208-371
Cow position: chr5:58446982-58446814 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 119, 45

Conread position: 208-372
Cow position: chr5:9089852-9090017 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 112, 69

Conread position: 208-372
Cow position: chr5:46322628-46322792 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 133
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 13, 20

Conread position: 208-372
Cow position: chr5:54311510-54311342 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 116, 25

Conread position: 209-372
Cow position: chr5:25020594-25020761 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 112, 57

Conread position: 209-372
Cow position: chr5:54086712-54086547 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 112, 20

Conread position: 210-328
Cow position: chr5:38647814-38647696 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 210-328
Cow position: chr5:43929562-43929680 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 210-328
Cow position: chr5:56338847-56338965 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 210-347
Cow position: chr5:34116149-34116013 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 29, 36

Conread position: 210-365
Cow position: chr5:12738384-12738542 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 126
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 31, 0

Conread position: 210-370
Cow position: chr5:56317463-56317302 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 63, 58

Conread position: 210-371
Cow position: chr5:61875712-61875550 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 16, 138

Conread position: 210-372
Cow position: chr5:34301094-34300925 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 36, 122

Conread position: 210-372
Cow position: chr5:41981544-41981378 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 133
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 32, 0

Conread position: 210-372
Cow position: chr5:43992498-43992330 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 138
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 120, 0

Conread position: 210-372
Cow position: chr5:59115558-59115392 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 19, 62

Conread position: 210-372
Cow position: chr5:60908838-60908672 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 131
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 111, 0

Conread position: 210-373
Cow position: chr5:58555312-58555142 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 137
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 18, 0

Conread position: 211-333
Cow position: chr5:45037424-45037301 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 31, 52

Conread position: 211-370
Cow position: chr5:57150840-57150673 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 63, 0

Conread position: 211-372
Cow position: chr5:13717400-13717562 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 115, 7

Conread position: 211-372
Cow position: chr5:37808489-37808657 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 24, 0

Conread position: 211-372
Cow position: chr5:49501651-49501818 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 136
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 116, 0

Conread position: 211-372
Cow position: chr5:56428143-56428305 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 130
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 109, 92

Conread position: 211-372
Cow position: chr5:57230164-57230332 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 134
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 36, 0

Conread position: 212-328
Cow position: chr5:53175086-53175202 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 65, 56

Conread position: 212-328
Cow position: chr5:57744751-57744867 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 212-329
Cow position: chr5:14354247-14354130 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 212-370
Cow position: chr5:49341877-49342041 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 118, 0

Conread position: 213-327
Cow position: chr5:58452549-58452437 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 213-348
Cow position: chr5:20882454-20882592 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 14, 31

Conread position: 213-372
Cow position: chr5:21039813-21039972 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 130
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 28, 17

Conread position: 213-372
Cow position: chr5:51490078-51490239 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 134
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 114, 29

Conread position: 214-348
Cow position: chr5:4336461-4336329 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 16, 11

Conread position: 214-370
Cow position: chr5:18062150-18062311 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 113, 24

Conread position: 214-372
Cow position: chr5:39447365-39447529 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 66, 8

Conread position: 214-372
Cow position: chr5:44993879-44994034 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 115, 0

Conread position: 214-372
Cow position: chr5:52108100-52108262 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 130
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 118, 28

Conread position: 216-328
Cow position: chr5:48061950-48062061 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 216-372
Cow position: chr5:35969700-35969539 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 131
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 113, 0

Conread position: 216-372
Cow position: chr5:59627268-59627106 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 109, 0

Conread position: 217-348
Cow position: chr5:695027-694896 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 110
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 38, 16

Conread position: 217-348
Cow position: chr5:3677884-3677755 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 105, 5

Conread position: 217-368
Cow position: chr5:3743487-3743332 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 124
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 108, 43

Conread position: 217-371
Cow position: chr5:56361960-56361803 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 105, 0

Conread position: 217-372
Cow position: chr5:17566271-17566432 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 217-372
Cow position: chr5:29771695-29771534 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 126
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 112, 0

Conread position: 217-372
Cow position: chr5:29828211-29828052 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 130
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 110, 32

Conread position: 217-372
Cow position: chr5:67634347-67634511 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 62, 0

Conread position: 218-327
Cow position: chr5:60126856-60126747 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 87
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 218-348
Cow position: chr5:64843805-64843939 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 109, 0

Conread position: 218-356
Cow position: chr5:23866314-23866449 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 130, 111

Conread position: 218-372
Cow position: chr5:2827538-2827380 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 101, 12

Conread position: 219-328
Cow position: chr5:64026856-64026963 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 219-348
Cow position: chr5:4347539-4347672 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 111, 0

Conread position: 219-372
Cow position: chr5:33273858-33273701 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 13, 27

Conread position: 219-373
Cow position: chr5:57101359-57101517 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 125
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 110, 44

Conread position: 220-345
Cow position: chr5:49821591-49821463 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 102, 25

Conread position: 220-371
Cow position: chr5:67932308-67932459 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 126, 119

Conread position: 221-370
Cow position: chr5:63234667-63234816 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 129, 29

Conread position: 221-372
Cow position: chr5:66972594-66972435 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 222-331
Cow position: chr5:38079531-38079423 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 222-363
Cow position: chr5:52001461-52001608 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 106, 0

Conread position: 222-365
Cow position: chr5:36868897-36868750 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 107, 65

Conread position: 222-366
Cow position: chr5:39937277-39937128 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 108, 0

Conread position: 222-369
Cow position: chr5:2240829-2240980 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 54, 60

Conread position: 222-370
Cow position: chr5:65679813-65679962 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 100, 29

Conread position: 222-371
Cow position: chr5:5856020-5855865 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 108, 0

Conread position: 222-371
Cow position: chr5:35208423-35208271 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 103, 0

Conread position: 222-372
Cow position: chr5:458648-458495 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 124
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 100, 12

Conread position: 222-372
Cow position: chr5:11769432-11769277 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 222-372
Cow position: chr5:12902079-12901929 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 107, 132

Conread position: 222-372
Cow position: chr5:14903905-14904063 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 222-372
Cow position: chr5:16205993-16206147 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 83, 126

Conread position: 222-372
Cow position: chr5:17999334-17999486 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 110
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 127, 0

Conread position: 222-372
Cow position: chr5:20994924-20995086 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 103, 0

Conread position: 222-372
Cow position: chr5:34528707-34528557 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 53, 16

Conread position: 222-372
Cow position: chr5:35246948-35247104 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 109, 149

Conread position: 222-372
Cow position: chr5:43846217-43846368 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 47, 113

Conread position: 222-372
Cow position: chr5:54750968-54750821 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 222-389
Cow position: chr5:60715206-60715374 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 100, 137

Conread position: 223-372
Cow position: chr5:29352965-29353119 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 21, 46

Conread position: 223-372
Cow position: chr5:67212519-67212367 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 104, 11

Conread position: 223-373
Cow position: chr5:20212120-20211967 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 104, 13

Conread position: 224-369
Cow position: chr5:30253901-30253750 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 106, 0

Conread position: 224-372
Cow position: chr5:16939434-16939588 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 100, 0

Conread position: 224-372
Cow position: chr5:19752462-19752313 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 129, 95

Conread position: 224-372
Cow position: chr5:44163208-44163363 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 13, 8

Conread position: 225-372
Cow position: chr5:2309399-2309550 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 99, 38

Conread position: 225-372
Cow position: chr5:43858263-43858413 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 102, 9

Conread position: 225-385
Cow position: chr5:53710530-53710696 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 99, 0

Conread position: 226-328
Cow position: chr5:65745608-65745709 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 226-348
Cow position: chr5:51490444-51490570 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 101, 0

Conread position: 226-349
Cow position: chr5:30236030-30235911 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 103
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 19, 0

Conread position: 226-366
Cow position: chr5:17383998-17384137 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 124, 93

Conread position: 226-369
Cow position: chr5:17602047-17602191 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 104, 125

Conread position: 226-372
Cow position: chr5:9369113-9369265 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 122
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 98, 0

Conread position: 226-372
Cow position: chr5:44796575-44796727 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 100, 0

Conread position: 226-372
Cow position: chr5:52723733-52723583 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 226-372
Cow position: chr5:59626812-59626965 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 44

Conread position: 226-383
Cow position: chr5:30845266-30845108 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 96, 34

Conread position: 226-389
Cow position: chr5:11668027-11668196 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 101, 0

Conread position: 227-327
Cow position: chr5:29979801-29979901 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 227-369
Cow position: chr5:63059216-63059083 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 7, 0

Conread position: 227-372
Cow position: chr5:42064362-42064211 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 97, 0

Conread position: 228-328
Cow position: chr5:52029560-52029463 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 85
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 72, 0

Conread position: 228-347
Cow position: chr5:38040408-38040529 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 102, 0

Conread position: 228-348
Cow position: chr5:16668853-16668729 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 99, 0

Conread position: 228-348
Cow position: chr5:44734567-44734693 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 228-369
Cow position: chr5:30276846-30276699 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 103, 0

Conread position: 228-370
Cow position: chr5:37646388-37646535 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 100, 63

Conread position: 228-372
Cow position: chr5:4280604-4280452 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 101, 0

Conread position: 228-372
Cow position: chr5:41294238-41294088 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 7, 136

Conread position: 228-372
Cow position: chr5:50101218-50101370 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 88, 0

Conread position: 228-372
Cow position: chr5:57062370-57062523 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 228-373
Cow position: chr5:5016581-5016434 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 122, 0

Conread position: 228-389
Cow position: chr5:18289278-18289119 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 146, 113

Conread position: 229-372
Cow position: chr5:33560579-33560728 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 38

Conread position: 230-371
Cow position: chr5:4267821-4267677 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 99, 18

Conread position: 230-372
Cow position: chr5:3772002-3771856 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 230-377
Cow position: chr5:55177039-55176897 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 23, 0

Conread position: 233-370
Cow position: chr5:36839110-36838968 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 96, 31

Conread position: 233-371
Cow position: chr5:29515355-29515489 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 233-371
Cow position: chr5:39258657-39258515 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 118
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 18, 0

Conread position: 233-372
Cow position: chr5:41713451-41713305 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 11, 117

Conread position: 233-372
Cow position: chr5:54350210-54350355 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 95, 0

Conread position: 233-375
Cow position: chr5:42753057-42752913 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 16, 110

Conread position: 234-328
Cow position: chr5:60207857-60207764 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 81
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 234-348
Cow position: chr5:19079399-19079284 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 93, 44

Conread position: 234-348
Cow position: chr5:36823033-36822919 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 99
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 234-371
Cow position: chr5:6683218-6683356 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 114, 10

Conread position: 234-372
Cow position: chr5:15471079-15470940 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 109, 128

Conread position: 234-372
Cow position: chr5:15479275-15479132 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 90, 46

Conread position: 234-372
Cow position: chr5:55795816-55795961 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 85, 0

Conread position: 234-378
Cow position: chr5:65722386-65722530 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 128, 11

Conread position: 235-348
Cow position: chr5:51125859-51125977 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 235-371
Cow position: chr5:60948281-60948140 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 116
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 78, 0

Conread position: 235-372
Cow position: chr5:41165237-41165094 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 94, 0

Conread position: 235-387
Cow position: chr5:28224601-28224444 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 97, 62

Conread position: 236-372
Cow position: chr5:1396747-1396606 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 88, 35

Conread position: 237-370
Cow position: chr5:69731647-69731514 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 85, 113

Conread position: 237-372
Cow position: chr5:56613416-56613558 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 237-372
Cow position: chr5:63987298-63987439 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 12, 81

Conread position: 238-371
Cow position: chr5:30805310-30805172 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 85, 0

Conread position: 239-372
Cow position: chr5:47323607-47323469 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 112
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 85, 0

Conread position: 241-328
Cow position: chr5:17644485-17644572 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 241-372
Cow position: chr5:5257145-5257282 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 83, 0

Conread position: 245-371
Cow position: chr5:23529144-23529271 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 84, 24

Conread position: 245-372
Cow position: chr5:7723804-7723670 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 82, 0

Conread position: 245-372
Cow position: chr5:60747142-60747270 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 105, 39

Conread position: 246-372
Cow position: chr5:26262541-26262668 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 104, 73

Conread position: 248-372
Cow position: chr5:62142812-62142682 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 81, 0

Show alignments to all cow chromosomes.