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Cow genome map

           
Conread name:
           
rche01_o13.y1
        

               
Conread position:
               
283-538
               

               
Cow position:
               
chr11:28643922-28644182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
283-551
               

               
Cow position:
               
chr11:18706980-18706717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
32, 111
               

               
Conread position:
               
290-538
               

               
Cow position:
               
chr11:23232671-23232425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
10, 107
               

               
Conread position:
               
291-544
               

               
Cow position:
               
chr11:67312633-67312881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
102, 20
               

               
Conread position:
               
296-543
               

               
Cow position:
               
chr11:11232604-11232356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
19, 172
               

               
Conread position:
               
296-607
               

               
Cow position:
               
chr11:27248343-27248671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
14, 110
               

               
Conread position:
               
298-538
               

               
Cow position:
               
chr11:69075762-69076005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
298-554
               

               
Cow position:
               
chr11:16540716-16540972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
78, 36
               

               
Conread position:
               
298-605
               

               
Cow position:
               
chr11:71390711-71390393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
12, 197
               

               
Conread position:
               
298-607
               

               
Cow position:
               
chr11:42358972-42359276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
109, 52
               

               
Conread position:
               
299-538
               

               
Cow position:
               
chr11:34145060-34144830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
77, 105
               

               
Conread position:
               
299-558
               

               
Cow position:
               
chr11:10213710-10213456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
16, 75
               

               
Conread position:
               
299-607
               

               
Cow position:
               
chr11:83043510-83043184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
17, 96
               

               
Conread position:
               
301-531
               

               
Cow position:
               
chr11:3833496-3833276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 68
               

               
Conread position:
               
301-531
               

               
Cow position:
               
chr11:23272144-23271916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
16, 48
               

               
Conread position:
               
301-538
               

               
Cow position:
               
chr11:63435373-63435615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
9, 166
               

               
Conread position:
               
301-538
               

               
Cow position:
               
chr11:77319268-77319509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
22, 9
               

               
Conread position:
               
301-564
               

               
Cow position:
               
chr11:65409299-65409034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
17, 104
               

               
Conread position:
               
301-592
               

               
Cow position:
               
chr11:11469779-11469488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
139, 54
               

               
Conread position:
               
301-606
               

               
Cow position:
               
chr11:7273373-7273056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 91
               

               
Conread position:
               
301-607
               

               
Cow position:
               
chr11:20238527-20238859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
301-607
               

               
Cow position:
               
chr11:62490289-62490604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
26, 9
               

               
Conread position:
               
301-607
               

               
Cow position:
               
chr11:64044097-64044400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
14, 92
               

               
Conread position:
               
301-607
               

               
Cow position:
               
chr11:67600638-67600961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
301-607
               

               
Cow position:
               
chr11:80923468-80923143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
14, 169
               

               
Conread position:
               
302-608
               

               
Cow position:
               
chr11:44031859-44032190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 55
               

               
Conread position:
               
303-608
               

               
Cow position:
               
chr11:19500921-19500620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
211, 59
               

               
Conread position:
               
304-513
               

               
Cow position:
               
chr11:67550513-67550309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
72, 51
               

               
Conread position:
               
304-544
               

               
Cow position:
               
chr11:63847708-63847947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
70, 91
               

               
Conread position:
               
307-538
               

               
Cow position:
               
chr11:76889911-76890140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
7, 70
               

               
Conread position:
               
307-607
               

               
Cow position:
               
chr11:49057265-49057566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
58, 86
               

               
Conread position:
               
308-533
               

               
Cow position:
               
chr11:33341283-33341055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
68, 111
               

               
Conread position:
               
308-538
               

               
Cow position:
               
chr11:3233949-3234170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
134, 65
               

               
Conread position:
               
308-538
               

               
Cow position:
               
chr11:29659421-29659654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
71, 8
               

               
Conread position:
               
308-538
               

               
Cow position:
               
chr11:29947067-29946819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
309-461
               

               
Cow position:
               
chr11:62979353-62979507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
309-538
               

               
Cow position:
               
chr11:2084005-2084238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
309-592
               

               
Cow position:
               
chr11:69810771-69811045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
82, 36
               

               
Conread position:
               
309-608
               

               
Cow position:
               
chr11:57873694-57873992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
65, 87
               

               
Conread position:
               
310-503
               

               
Cow position:
               
chr11:16262162-16261966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
59, 91
               

               
Conread position:
               
310-538
               

               
Cow position:
               
chr11:17493342-17493577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
8, 65
               

               
Conread position:
               
310-538
               

               
Cow position:
               
chr11:44234217-44234450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
310-538
               

               
Cow position:
               
chr11:62151021-62150799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
13, 22
               

               
Conread position:
               
310-538
               

               
Cow position:
               
chr11:76114518-76114737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
8, 61
               

               
Conread position:
               
310-546
               

               
Cow position:
               
chr11:34113129-34113369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
66, 97
               

               
Conread position:
               
310-563
               

               
Cow position:
               
chr11:63909791-63909544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
132, 34
               

               
Conread position:
               
310-570
               

               
Cow position:
               
chr11:83066358-83066614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
7, 133
               

               
Conread position:
               
311-481
               

               
Cow position:
               
chr11:65430926-65431091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
86, 112
               

               
Conread position:
               
311-483
               

               
Cow position:
               
chr11:14094557-14094381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
311-484
               

               
Cow position:
               
chr11:2811862-2811690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 33
               

               
Conread position:
               
311-485
               

               
Cow position:
               
chr11:42793106-42792932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
63, 93
               

               
Conread position:
               
311-493
               

               
Cow position:
               
chr11:4323224-4323407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
65, 93
               

               
Conread position:
               
311-509
               

               
Cow position:
               
chr11:30120799-30120597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
63, 146
               

               
Conread position:
               
311-512
               

               
Cow position:
               
chr11:36286563-36286763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
65, 88
               

               
Conread position:
               
311-512
               

               
Cow position:
               
chr11:62880757-62880564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
130, 64
               

               
Conread position:
               
311-513
               

               
Cow position:
               
chr11:10620458-10620259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
131, 49
               

               
Conread position:
               
311-513
               

               
Cow position:
               
chr11:41176083-41175880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
58, 89
               

               
Conread position:
               
311-527
               

               
Cow position:
               
chr11:56654416-56654639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
311-530
               

               
Cow position:
               
chr11:48672581-48672798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
61, 17
               

               
Conread position:
               
311-530
               

               
Cow position:
               
chr11:59902758-59902976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
63, 75
               

               
Conread position:
               
311-531
               

               
Cow position:
               
chr11:33754036-33753824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
205, 81
               

               
Conread position:
               
311-531
               

               
Cow position:
               
chr11:36986833-36987037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
131, 31
               

               
Conread position:
               
311-532
               

               
Cow position:
               
chr11:34829914-34829697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
65, 34
               

               
Conread position:
               
311-532
               

               
Cow position:
               
chr11:48496721-48496504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
132, 33
               

               
Conread position:
               
311-533
               

               
Cow position:
               
chr11:11558034-11558261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
311-535
               

               
Cow position:
               
chr11:47544997-47545223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
64, 159
               

               
Conread position:
               
311-536
               

               
Cow position:
               
chr11:13499883-13500108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
84, 92
               

               
Conread position:
               
311-536
               

               
Cow position:
               
chr11:48474570-48474796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
65, 85
               

               
Conread position:
               
311-536
               

               
Cow position:
               
chr11:52983547-52983767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
65, 22
               

               
Conread position:
               
311-536
               

               
Cow position:
               
chr11:64638662-64638433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
63, 150
               

               
Conread position:
               
311-537
               

               
Cow position:
               
chr11:1071226-1070997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
311-537
               

               
Cow position:
               
chr11:20761713-20761936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
64, 84
               

               
Conread position:
               
311-537
               

               
Cow position:
               
chr11:70250792-70251012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
133, 34
               

               
Conread position:
               
311-537
               

               
Cow position:
               
chr11:79728802-79728574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
63, 84
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:1380549-1380770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
142, 25
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:2092206-2092422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
80, 34
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:6234012-6233785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
65, 13
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:7590060-7590283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
65, 84
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:8148030-8147804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
61, 25
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:8545145-8544923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
65, 19
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:8988362-8988137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
47, 84
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:13043277-13043051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
65, 33
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:13592604-13592830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
7, 34
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:13864231-13864009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
133, 42
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:15772848-15772619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
66, 86
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:16907177-16906956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
58, 74
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:19592124-19591900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
66, 81
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:21844266-21844044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
72, 62
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:21894285-21894067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
92, 58
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:23128676-23128446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
64, 94
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:23138193-23137959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:23251725-23251499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
65, 87
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:25386930-25387163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:26144229-26144001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
73, 95
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:27913142-27913379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
70, 62
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:30639075-30638855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
131, 64
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:33414104-33414331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
133, 74
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:35684628-35684406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
55, 64
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:37804687-37804459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
61, 37
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:39462496-39462718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 33
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:41986177-41985951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
8, 27
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:42044118-42043902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:52381007-52380777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:63482559-63482335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
63, 89
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:65762733-65762493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:68913009-68913235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 82
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:70086195-70086427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
63, 183
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:70756348-70756572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
207, 131
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:71492988-71492767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
58, 84
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:71807704-71807472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
51, 75
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:71868737-71868508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
63, 93
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:77118577-77118794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
31, 85
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:78381187-78380970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
38, 23
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:80761512-80761283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
66, 93
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:83230524-83230306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
65, 34
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:83397772-83398000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
66, 85
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:84385770-84385544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
14, 85
               

               
Conread position:
               
311-538
               

               
Cow position:
               
chr11:87155386-87155614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
49, 64
               

               
Conread position:
               
311-541
               

               
Cow position:
               
chr11:50778240-50778464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
63, 84
               

               
Conread position:
               
311-541
               

               
Cow position:
               
chr11:70978860-70978638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
131, 42
               

               
Conread position:
               
311-541
               

               
Cow position:
               
chr11:71501265-71501035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
61, 94
               

               
Conread position:
               
311-542
               

               
Cow position:
               
chr11:53778482-53778715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
65, 85
               

               
Conread position:
               
311-542
               

               
Cow position:
               
chr11:59872798-59873028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
58, 82
               

               
Conread position:
               
311-542
               

               
Cow position:
               
chr11:66572634-66572400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
65, 142
               

               
Conread position:
               
311-543
               

               
Cow position:
               
chr11:45898186-45897949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
63, 82
               

               
Conread position:
               
311-543
               

               
Cow position:
               
chr11:56518442-56518212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
66, 132
               

               
Conread position:
               
311-543
               

               
Cow position:
               
chr11:62239613-62239844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
135, 47
               

               
Conread position:
               
311-544
               

               
Cow position:
               
chr11:15632690-15632455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
40, 65
               

               
Conread position:
               
311-544
               

               
Cow position:
               
chr11:17831350-17831120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
65, 22
               

               
Conread position:
               
311-544
               

               
Cow position:
               
chr11:40478983-40478752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
65, 91
               

               
Conread position:
               
311-544
               

               
Cow position:
               
chr11:44636891-44636652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
311-544
               

               
Cow position:
               
chr11:44642420-44642191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
73, 63
               

               
Conread position:
               
311-544
               

               
Cow position:
               
chr11:59702353-59702592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
128, 62
               

               
Conread position:
               
311-544
               

               
Cow position:
               
chr11:63999223-63998991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
64, 125
               

               
Conread position:
               
311-544
               

               
Cow position:
               
chr11:67804619-67804843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
47, 88
               

               
Conread position:
               
311-544
               

               
Cow position:
               
chr11:70609653-70609899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
65, 182
               

               
Conread position:
               
311-544
               

               
Cow position:
               
chr11:77750905-77750671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
65, 109
               

               
Conread position:
               
311-544
               

               
Cow position:
               
chr11:80530235-80530461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
65, 85
               

               
Conread position:
               
311-545
               

               
Cow position:
               
chr11:34032335-34032097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
63, 93
               

               
Conread position:
               
311-545
               

               
Cow position:
               
chr11:40573466-40573234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
58, 93
               

               
Conread position:
               
311-545
               

               
Cow position:
               
chr11:49148906-49149151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
128, 80
               

               
Conread position:
               
311-545
               

               
Cow position:
               
chr11:50152949-50152712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
311-547
               

               
Cow position:
               
chr11:30209955-30209719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
64, 19
               

               
Conread position:
               
311-547
               

               
Cow position:
               
chr11:77128525-77128764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
81, 51
               

               
Conread position:
               
311-548
               

               
Cow position:
               
chr11:1362609-1362362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
311-551
               

               
Cow position:
               
chr11:45619220-45619460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
34, 51
               

               
Conread position:
               
311-551
               

               
Cow position:
               
chr11:70836504-70836267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
73, 49
               

               
Conread position:
               
311-551
               

               
Cow position:
               
chr11:77745389-77745143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
55, 238
               

               
Conread position:
               
311-555
               

               
Cow position:
               
chr11:2925421-2925187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
131, 62
               

               
Conread position:
               
311-555
               

               
Cow position:
               
chr11:3393343-3393094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
93, 62
               

               
Conread position:
               
311-555
               

               
Cow position:
               
chr11:43360916-43360667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
65, 136
               

               
Conread position:
               
311-557
               

               
Cow position:
               
chr11:38874536-38874286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
50, 82
               

               
Conread position:
               
311-558
               

               
Cow position:
               
chr11:73512564-73512328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
65, 34
               

               
Conread position:
               
311-579
               

               
Cow position:
               
chr11:28993865-28993596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
63, 82
               

               
Conread position:
               
311-579
               

               
Cow position:
               
chr11:49934870-49934591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
311-591
               

               
Cow position:
               
chr11:68905208-68904921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
65, 80
               

               
Conread position:
               
311-591
               

               
Cow position:
               
chr11:71009005-71009274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
225, 58
               

               
Conread position:
               
311-591
               

               
Cow position:
               
chr11:73354187-73353900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
67, 75
               

               
Conread position:
               
311-601
               

               
Cow position:
               
chr11:18572668-18572960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
65, 85
               

               
Conread position:
               
311-602
               

               
Cow position:
               
chr11:21852437-21852138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
61, 37
               

               
Conread position:
               
311-602
               

               
Cow position:
               
chr11:45631895-45631602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
65, 131
               

               
Conread position:
               
311-603
               

               
Cow position:
               
chr11:16342374-16342069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
33, 242
               

               
Conread position:
               
311-603
               

               
Cow position:
               
chr11:21728402-21728110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
131, 42
               

               
Conread position:
               
311-603
               

               
Cow position:
               
chr11:33348317-33348020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
65, 81
               

               
Conread position:
               
311-603
               

               
Cow position:
               
chr11:48544303-48544615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
37, 50
               

               
Conread position:
               
311-603
               

               
Cow position:
               
chr11:51729155-51729453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 41
               

               
Conread position:
               
311-603
               

               
Cow position:
               
chr11:52297354-52297044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 107
               

               
Conread position:
               
311-604
               

               
Cow position:
               
chr11:19247329-19247025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
131, 59
               

               
Conread position:
               
311-604
               

               
Cow position:
               
chr11:45434953-45435255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
144, 47
               

               
Conread position:
               
311-605
               

               
Cow position:
               
chr11:45646728-45646416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
64, 162
               

               
Conread position:
               
311-606
               

               
Cow position:
               
chr11:259306-258991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
66, 107
               

               
Conread position:
               
311-606
               

               
Cow position:
               
chr11:17227779-17227470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
47, 152
               

               
Conread position:
               
311-606
               

               
Cow position:
               
chr11:40395305-40395619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
120, 91
               

               
Conread position:
               
311-607
               

               
Cow position:
               
chr11:18698744-18699053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
65, 85
               

               
Conread position:
               
311-607
               

               
Cow position:
               
chr11:48306477-48306193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
131, 17
               

               
Conread position:
               
311-607
               

               
Cow position:
               
chr11:49152819-49153123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
65, 26
               

               
Conread position:
               
311-607
               

               
Cow position:
               
chr11:61427473-61427751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
131, 58
               

               
Conread position:
               
311-607
               

               
Cow position:
               
chr11:62574138-62573845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
25, 34
               

               
Conread position:
               
311-607
               

               
Cow position:
               
chr11:64904864-64905150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
64, 100
               

               
Conread position:
               
311-607
               

               
Cow position:
               
chr11:66041139-66041455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
311-607
               

               
Cow position:
               
chr11:69977844-69978148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
136, 62
               

               
Conread position:
               
311-607
               

               
Cow position:
               
chr11:75874885-75874589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
131, 60
               

               
Conread position:
               
311-607
               

               
Cow position:
               
chr11:80556087-80556401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
57, 108
               

               
Conread position:
               
311-608
               

               
Cow position:
               
chr11:13061363-13061070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 56
               

               
Conread position:
               
311-608
               

               
Cow position:
               
chr11:17660961-17661247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
203, 58
               

               
Conread position:
               
311-608
               

               
Cow position:
               
chr11:32254350-32254032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
65, 23
               

               
Conread position:
               
311-608
               

               
Cow position:
               
chr11:39115360-39115657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
64, 159
               

               
Conread position:
               
311-608
               

               
Cow position:
               
chr11:47899146-47899434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
64, 82
               

               
Conread position:
               
311-608
               

               
Cow position:
               
chr11:48295899-48296209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
57, 33
               

               
Conread position:
               
311-608
               

               
Cow position:
               
chr11:67615376-67615068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
86, 23
               

               
Conread position:
               
312-493
               

               
Cow position:
               
chr11:3726156-3726337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
62, 92
               

               
Conread position:
               
312-500
               

               
Cow position:
               
chr11:36981435-36981619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
103, 55
               

               
Conread position:
               
312-501
               

               
Cow position:
               
chr11:4732210-4732399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
65, 92
               

               
Conread position:
               
312-502
               

               
Cow position:
               
chr11:17495873-17495684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 42
               

               
Conread position:
               
312-502
               

               
Cow position:
               
chr11:20684706-20684514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
62, 93
               

               
Conread position:
               
312-503
               

               
Cow position:
               
chr11:7497775-7497588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
66, 88
               

               
Conread position:
               
312-516
               

               
Cow position:
               
chr11:33287082-33286885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
132, 48
               

               
Conread position:
               
312-516
               

               
Cow position:
               
chr11:45872449-45872239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
312-536
               

               
Cow position:
               
chr11:40258540-40258317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
63, 87
               

               
Conread position:
               
312-538
               

               
Cow position:
               
chr11:6245190-6245409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
57, 74
               

               
Conread position:
               
312-538
               

               
Cow position:
               
chr11:17889855-17889634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
127, 57
               

               
Conread position:
               
312-538
               

               
Cow position:
               
chr11:70278240-70278018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
60, 83
               

               
Conread position:
               
312-538
               

               
Cow position:
               
chr11:83925918-83926137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
57, 81
               

               
Conread position:
               
312-542
               

               
Cow position:
               
chr11:61958877-61958646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
92, 79
               

               
Conread position:
               
312-544
               

               
Cow position:
               
chr11:38577904-38577678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
64, 46
               

               
Conread position:
               
312-551
               

               
Cow position:
               
chr11:40608730-40608485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 162
               

               
Conread position:
               
312-551
               

               
Cow position:
               
chr11:77758888-77758654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
191, 43
               

               
Conread position:
               
312-607
               

               
Cow position:
               
chr11:7460747-7460447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
62, 86
               

               
Conread position:
               
312-607
               

               
Cow position:
               
chr11:28395337-28395639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
24, 107
               

               
Conread position:
               
312-607
               

               
Cow position:
               
chr11:67615061-67614742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 97
               

               
Conread position:
               
312-607
               

               
Cow position:
               
chr11:77546286-77546579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
130, 30
               

               
Conread position:
               
313-527
               

               
Cow position:
               
chr11:82940752-82940541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
59, 20
               

               
Conread position:
               
313-537
               

               
Cow position:
               
chr11:36799433-36799214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
63, 74
               

               
Conread position:
               
313-538
               

               
Cow position:
               
chr11:377775-377547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
313-538
               

               
Cow position:
               
chr11:17278795-17278581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
205, 51
               

               
Conread position:
               
313-538
               

               
Cow position:
               
chr11:20602098-20602321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
78, 46
               

               
Conread position:
               
313-538
               

               
Cow position:
               
chr11:46747995-46747766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
313-544
               

               
Cow position:
               
chr11:64868146-64867919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
66, 77
               

               
Conread position:
               
313-579
               

               
Cow position:
               
chr11:86132583-86132316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
133, 84
               

               
Conread position:
               
313-607
               

               
Cow position:
               
chr11:9270857-9270555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
64, 98
               

               
Conread position:
               
313-608
               

               
Cow position:
               
chr11:30708373-30708689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
59, 220
               

               
Conread position:
               
314-536
               

               
Cow position:
               
chr11:34121070-34121291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
79, 46
               

               
Conread position:
               
314-538
               

               
Cow position:
               
chr11:2576034-2575809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
76, 61
               

               
Conread position:
               
314-538
               

               
Cow position:
               
chr11:23586507-23586733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
92, 59
               

               
Conread position:
               
314-538
               

               
Cow position:
               
chr11:52690652-52690427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
62, 83
               

               
Conread position:
               
314-540
               

               
Cow position:
               
chr11:43898010-43898236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
62, 18
               

               
Conread position:
               
314-541
               

               
Cow position:
               
chr11:35580127-35580358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
61, 72
               

               
Conread position:
               
314-555
               

               
Cow position:
               
chr11:47772522-47772276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
61, 28
               

               
Conread position:
               
314-576
               

               
Cow position:
               
chr11:62663351-62663092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
128, 68
               

               
Conread position:
               
314-603
               

               
Cow position:
               
chr11:40818768-40818454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
61, 305
               

               
Conread position:
               
314-607
               

               
Cow position:
               
chr11:35213292-35212988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
130, 28
               

               
Conread position:
               
314-608
               

               
Cow position:
               
chr11:2917716-2917409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 83
               

               
Conread position:
               
315-507
               

               
Cow position:
               
chr11:24937534-24937728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
315-607
               

               
Cow position:
               
chr11:49873017-49872704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
17, 154
               

               
Conread position:
               
316-579
               

               
Cow position:
               
chr11:81162561-81162295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
60, 16
               

               
Conread position:
               
317-534
               

               
Cow position:
               
chr11:63434183-63433969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
59, 74
               

               
Conread position:
               
318-537
               

               
Cow position:
               
chr11:46746502-46746731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
38, 16
               

               
Conread position:
               
318-538
               

               
Cow position:
               
chr11:261389-261173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
56, 68
               

               
Conread position:
               
318-538
               

               
Cow position:
               
chr11:14470244-14470460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
196, 56
               

               
Conread position:
               
318-538
               

               
Cow position:
               
chr11:25791813-25791600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
126, 51
               

               
Conread position:
               
318-538
               

               
Cow position:
               
chr11:33345317-33345540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
54, 86
               

               
Conread position:
               
318-538
               

               
Cow position:
               
chr11:47837187-47837414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
318-538
               

               
Cow position:
               
chr11:48272071-48272295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
318-539
               

               
Cow position:
               
chr11:30954873-30955096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 77
               

               
Conread position:
               
318-544
               

               
Cow position:
               
chr11:5201766-5201550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
123, 27
               

               
Conread position:
               
318-544
               

               
Cow position:
               
chr11:65607817-65607588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
56, 75
               

               
Conread position:
               
318-544
               

               
Cow position:
               
chr11:66188447-66188216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
58, 10
               

               
Conread position:
               
318-563
               

               
Cow position:
               
chr11:35775212-35775454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
52, 91
               

               
Conread position:
               
318-579
               

               
Cow position:
               
chr11:27719449-27719190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
55, 130
               

               
Conread position:
               
318-590
               

               
Cow position:
               
chr11:24601847-24602123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
124, 54
               

               
Conread position:
               
318-607
               

               
Cow position:
               
chr11:27746798-27747101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
46, 80
               

               
Conread position:
               
318-607
               

               
Cow position:
               
chr11:38638993-38639282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
123, 51
               

               
Conread position:
               
318-607
               

               
Cow position:
               
chr11:42083352-42083636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
200, 18
               

               
Conread position:
               
318-607
               

               
Cow position:
               
chr11:71806270-71805983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
59, 78
               

               
Conread position:
               
318-608
               

               
Cow position:
               
chr11:33825017-33824730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
56, 156
               

               
Conread position:
               
319-464
               

               
Cow position:
               
chr11:16251372-16251224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
319-529
               

               
Cow position:
               
chr11:5341-5549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
49, 30
               

               
Conread position:
               
319-533
               

               
Cow position:
               
chr11:35874117-35873913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
127, 42
               

               
Conread position:
               
319-533
               

               
Cow position:
               
chr11:65157537-65157318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 81
               

               
Conread position:
               
319-538
               

               
Cow position:
               
chr11:30192047-30192273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
15, 79
               

               
Conread position:
               
319-538
               

               
Cow position:
               
chr11:34646467-34646684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
127, 22
               

               
Conread position:
               
319-538
               

               
Cow position:
               
chr11:36238658-36238872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
57, 80
               

               
Conread position:
               
319-538
               

               
Cow position:
               
chr11:41293944-41293723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
29, 77
               

               
Conread position:
               
319-538
               

               
Cow position:
               
chr11:44222765-44222980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
73, 26
               

               
Conread position:
               
319-541
               

               
Cow position:
               
chr11:18851793-18852005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
122, 57
               

               
Conread position:
               
319-542
               

               
Cow position:
               
chr11:31352694-31352453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
319-543
               

               
Cow position:
               
chr11:65767072-65767299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
319-544
               

               
Cow position:
               
chr11:48649856-48650073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
123, 56
               

               
Conread position:
               
319-550
               

               
Cow position:
               
chr11:67246667-67246892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
55, 74
               

               
Conread position:
               
319-551
               

               
Cow position:
               
chr11:21497396-21497629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
47, 76
               

               
Conread position:
               
319-579
               

               
Cow position:
               
chr11:39499233-39499507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
77, 17
               

               
Conread position:
               
319-607
               

               
Cow position:
               
chr11:41058-41353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
74, 22
               

               
Conread position:
               
319-607
               

               
Cow position:
               
chr11:4663171-4662880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 74
               

               
Conread position:
               
319-607
               

               
Cow position:
               
chr11:30830741-30830440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 277
               

               
Conread position:
               
319-607
               

               
Cow position:
               
chr11:36182561-36182874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
39, 76
               

               
Conread position:
               
319-607
               

               
Cow position:
               
chr11:55052761-55053046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
127, 26
               

               
Conread position:
               
319-607
               

               
Cow position:
               
chr11:74316587-74316889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
58, 84
               

               
Conread position:
               
319-607
               

               
Cow position:
               
chr11:83032558-83032860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
57, 26
               

               
Conread position:
               
319-608
               

               
Cow position:
               
chr11:23407336-23407644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
319-608
               

               
Cow position:
               
chr11:55494554-55494848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 54
               

               
Conread position:
               
319-608
               

               
Cow position:
               
chr11:62789003-62789311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
319-608
               

               
Cow position:
               
chr11:80820124-80819841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 54
               

               
Conread position:
               
320-476
               

               
Cow position:
               
chr11:6154288-6154440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
122, 30
               

               
Conread position:
               
320-533
               

               
Cow position:
               
chr11:35153949-35153735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
56, 83
               

               
Conread position:
               
320-538
               

               
Cow position:
               
chr11:6194081-6194302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
122, 82
               

               
Conread position:
               
320-538
               

               
Cow position:
               
chr11:81135289-81135073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
127, 53
               

               
Conread position:
               
320-542
               

               
Cow position:
               
chr11:4207188-4207409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 57
               

               
Conread position:
               
320-543
               

               
Cow position:
               
chr11:8525235-8525016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
55, 64
               

               
Conread position:
               
321-527
               

               
Cow position:
               
chr11:66425004-66424796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
55, 186
               

               
Conread position:
               
321-538
               

               
Cow position:
               
chr11:11125539-11125757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
53, 78
               

               
Conread position:
               
321-538
               

               
Cow position:
               
chr11:36658944-36658729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
54, 125
               

               
Conread position:
               
321-538
               

               
Cow position:
               
chr11:54334210-54334423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
57, 75
               

               
Conread position:
               
321-555
               

               
Cow position:
               
chr11:42296741-42296506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
55, 78
               

               
Conread position:
               
321-607
               

               
Cow position:
               
chr11:69392433-69392712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
16, 82
               

               
Conread position:
               
322-530
               

               
Cow position:
               
chr11:72375808-72375594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
54, 84
               

               
Conread position:
               
322-540
               

               
Cow position:
               
chr11:3739831-3740051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 23
               

               
Conread position:
               
322-544
               

               
Cow position:
               
chr11:14466610-14466386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
50, 6
               

               
Conread position:
               
322-608
               

               
Cow position:
               
chr11:42066738-42067048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
71, 51
               

               
Conread position:
               
322-608
               

               
Cow position:
               
chr11:63469754-63470042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 50
               

               
Conread position:
               
323-538
               

               
Cow position:
               
chr11:63920170-63919959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
119, 71
               

               
Conread position:
               
324-528
               

               
Cow position:
               
chr11:84490610-84490415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
51, 62
               

               
Conread position:
               
324-533
               

               
Cow position:
               
chr11:44036605-44036809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
51, 21
               

               
Conread position:
               
324-607
               

               
Cow position:
               
chr11:19946314-19946604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
33, 80
               

               
Conread position:
               
327-538
               

               
Cow position:
               
chr11:7385320-7385533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
49, 82
               

               
Conread position:
               
327-603
               

               
Cow position:
               
chr11:63221222-63221512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
48, 187
               

               
Conread position:
               
329-607
               

               
Cow position:
               
chr11:67871721-67871440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
8, 103
               

               
Conread position:
               
330-534
               

               
Cow position:
               
chr11:29960181-29960386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
42, 139
               

               
Conread position:
               
330-555
               

               
Cow position:
               
chr11:8428394-8428623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
9, 84
               

               
Conread position:
               
330-579
               

               
Cow position:
               
chr11:55761756-55762009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
46, 65
               

               
Conread position:
               
334-606
               

               
Cow position:
               
chr11:41272025-41272300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 212
               

               
Conread position:
               
336-531
               

               
Cow position:
               
chr11:46592358-46592550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 110
               

               
Conread position:
               
336-601
               

               
Cow position:
               
chr11:17036638-17036355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
337-514
               

               
Cow position:
               
chr11:75965757-75965582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
40, 58
               

               
Conread position:
               
337-538
               

               
Cow position:
               
chr11:83033344-83033145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
39, 65
               

               
Conread position:
               
338-540
               

               
Cow position:
               
chr11:26845701-26845497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
37, 61
               

               
Conread position:
               
338-543
               

               
Cow position:
               
chr11:249591-249382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
339-607
               

               
Cow position:
               
chr11:30493893-30494171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
36, 65
               

               
Conread position:
               
340-555
               

               
Cow position:
               
chr11:63687717-63687507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
102, 5
               

               
Conread position:
               
340-607
               

               
Cow position:
               
chr11:31227864-31228136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
102, 29
               

               
Conread position:
               
342-502
               

               
Cow position:
               
chr11:18588688-18588528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
34, 57
               

               
Conread position:
               
345-538
               

               
Cow position:
               
chr11:1625323-1625130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
102, 30
               

               
Conread position:
               
345-538
               

               
Cow position:
               
chr11:22499463-22499272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
99, 56
               

               
Conread position:
               
345-540
               

               
Cow position:
               
chr11:39060700-39060505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
18, 47
               

               
Conread position:
               
345-545
               

               
Cow position:
               
chr11:6633606-6633812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
345-603
               

               
Cow position:
               
chr11:12111553-12111297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
33, 58
               

               
Conread position:
               
345-605
               

               
Cow position:
               
chr11:15338966-15339236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
100, 29
               

               
Conread position:
               
346-538
               

               
Cow position:
               
chr11:62620281-62620471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
96, 29
               

               
Conread position:
               
346-551
               

               
Cow position:
               
chr11:69119193-69119400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 201
               

               
Conread position:
               
346-603
               

               
Cow position:
               
chr11:42160159-42159883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
29, 127
               

               
Conread position:
               
347-579
               

               
Cow position:
               
chr11:17083408-17083162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
50, 28
               

               
Conread position:
               
347-603
               

               
Cow position:
               
chr11:24599487-24599220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
28, 149
               

               
Conread position:
               
347-606
               

               
Cow position:
               
chr11:33409355-33409084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 9
               

               
Conread position:
               
348-538
               

               
Cow position:
               
chr11:13075896-13075717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
28, 47
               

               
Conread position:
               
348-550
               

               
Cow position:
               
chr11:64406131-64406334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
48, 25
               

               
Conread position:
               
349-608
               

               
Cow position:
               
chr11:62813045-62812768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
47, 24
               

               
Conread position:
               
350-538
               

               
Cow position:
               
chr11:80564198-80564387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
22, 46
               

               
Conread position:
               
352-545
               

               
Cow position:
               
chr11:8437782-8437592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
24, 58
               

               
Conread position:
               
353-607
               

               
Cow position:
               
chr11:17676460-17676192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
94, 20
               

               
Conread position:
               
356-606
               

               
Cow position:
               
chr11:41603778-41603519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
20, 157
               

               
Conread position:
               
356-607
               

               
Cow position:
               
chr11:35536499-35536758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
21, 39
               

               
Conread position:
               
357-502
               

               
Cow position:
               
chr11:54218631-54218772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
85, 16
               

               
Conread position:
               
358-528
               

               
Cow position:
               
chr11:70619955-70620129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
358-538
               

               
Cow position:
               
chr11:35803047-35803232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
17, 110
               

               
Conread position:
               
358-608
               

               
Cow position:
               
chr11:48085829-48086102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
359-544
               

               
Cow position:
               
chr11:17721888-17721700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
36, 14
               

               
Conread position:
               
359-576
               

               
Cow position:
               
chr11:30354974-30355193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
30, 14
               

               
Conread position:
               
359-579
               

               
Cow position:
               
chr11:84890806-84890576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
17, 135
               

               
Conread position:
               
359-607
               

               
Cow position:
               
chr11:47724817-47725072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
17, 81
               

               
Conread position:
               
359-608
               

               
Cow position:
               
chr11:63866738-63866477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
155, 14
               

               
Conread position:
               
362-534
               

               
Cow position:
               
chr11:28168505-28168332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
36, 11
               

               
Conread position:
               
362-538
               

               
Cow position:
               
chr11:22747412-22747236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
31, 95
               

               
Conread position:
               
362-538
               

               
Cow position:
               
chr11:53279795-53279620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 11
               

               
Conread position:
               
366-532
               

               
Cow position:
               
chr11:3790757-3790931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
367-530
               

               
Cow position:
               
chr11:30483840-30484006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
373-512
               

               
Cow position:
               
chr11:11045104-11044965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
68, 83
               

               
Conread position:
               
373-538
               

               
Cow position:
               
chr11:31410954-31410783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
373-591
               

               
Cow position:
               
chr11:4637244-4637008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
373-607
               

               
Cow position:
               
chr11:82740437-82740675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
374-533
               

               
Cow position:
               
chr11:10363458-10363297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
374-533
               

               
Cow position:
               
chr11:48248286-48248126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
71, 52
               

               
Conread position:
               
374-604
               

               
Cow position:
               
chr11:30867111-30867357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
375-538
               

               
Cow position:
               
chr11:35926975-35926815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
375-607
               

               
Cow position:
               
chr11:18785940-18785713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
26, 71
               

               
Conread position:
               
376-538
               

               
Cow position:
               
chr11:79019128-79018964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
377-540
               

               
Cow position:
               
chr11:29699768-29699603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
378-544
               

               
Cow position:
               
chr11:19606512-19606679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
33, 15
               

               
Conread position:
               
380-606
               

               
Cow position:
               
chr11:25119997-25119754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
17, 146
               

               
Conread position:
               
381-544
               

               
Cow position:
               
chr11:1932556-1932388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
385-607
               

               
Cow position:
               
chr11:46922946-46922704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
386-538
               

               
Cow position:
               
chr11:82731059-82730903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
389-538
               

               
Cow position:
               
chr11:64090154-64090003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 143
               

               
Conread position:
               
391-538
               

               
Cow position:
               
chr11:34413395-34413245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
394-532
               

               
Cow position:
               
chr11:76822137-76822000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
53, 73
               

               
Conread position:
               
394-547
               

               
Cow position:
               
chr11:38211594-38211749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
395-535
               

               
Cow position:
               
chr11:69652831-69652690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
42, 74
               

               
Conread position:
               
395-538
               

               
Cow position:
               
chr11:56290462-56290606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
49, 7
               

               
Conread position:
               
395-542
               

               
Cow position:
               
chr11:53553169-53553314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
47, 22
               

               
Conread position:
               
396-608
               

               
Cow position:
               
chr11:20205899-20205674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
396-608
               

               
Cow position:
               
chr11:35670000-35669782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
46, 7
               

               
Conread position:
               
396-608
               

               
Cow position:
               
chr11:80639599-80639368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
46, 188
               

               
Conread position:
               
397-538
               

               
Cow position:
               
chr11:47882755-47882898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
397-607
               

               
Cow position:
               
chr11:64104951-64105176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
49, 33
               

               
Conread position:
               
398-543
               

               
Cow position:
               
chr11:50072890-50073037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
398-546
               

               
Cow position:
               
chr11:84977406-84977255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
398-579
               

               
Cow position:
               
chr11:81931159-81930981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
120, 47
               

               
Conread position:
               
399-532
               

               
Cow position:
               
chr11:16843030-16842899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
43, 115
               

               
Conread position:
               
399-538
               

               
Cow position:
               
chr11:15382549-15382408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
399-542
               

               
Cow position:
               
chr11:29786544-29786400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
400-599
               

               
Cow position:
               
chr11:16801997-16801803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
116, 42
               

               
Conread position:
               
401-544
               

               
Cow position:
               
chr11:36329079-36328933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
401-607
               

               
Cow position:
               
chr11:57331756-57331967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
11, 91
               

               
Conread position:
               
402-538
               

               
Cow position:
               
chr11:18587639-18587501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
402-538
               

               
Cow position:
               
chr11:37425185-37425057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
114, 31
               

               
Conread position:
               
402-607
               

               
Cow position:
               
chr11:897630-897847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
402-607
               

               
Cow position:
               
chr11:18447535-18447318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
402-607
               

               
Cow position:
               
chr11:77013741-77013953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
40, 51
               

               
Conread position:
               
402-608
               

               
Cow position:
               
chr11:18914982-18915194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
403-608
               

               
Cow position:
               
chr11:57491522-57491318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
111, 38
               

               
Conread position:
               
404-538
               

               
Cow position:
               
chr11:32691013-32690876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
404-608
               

               
Cow position:
               
chr11:21885792-21886014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
38, 82
               

               
Conread position:
               
410-538
               

               
Cow position:
               
chr11:53717842-53717712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
410-538
               

               
Cow position:
               
chr11:58173590-58173719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 63
               

               
Conread position:
               
412-536
               

               
Cow position:
               
chr11:3896732-3896607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
102, 33
               

               
Conread position:
               
413-536
               

               
Cow position:
               
chr11:65803903-65803777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
413-539
               

               
Cow position:
               
chr11:30895036-30894908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
415-538
               

               
Cow position:
               
chr11:3248736-3248612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
27, 49
               

               
Conread position:
               
417-533
               

               
Cow position:
               
chr11:2900749-2900631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
417-563
               

               
Cow position:
               
chr11:17638563-17638413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
417-607
               

               
Cow position:
               
chr11:30843047-30842842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
420-538
               

               
Cow position:
               
chr11:71021975-71022095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
420-603
               

               
Cow position:
               
chr11:30210876-30211064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 168
               

               
Conread position:
               
420-607
               

               
Cow position:
               
chr11:51196108-51195914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
423-538
               

               
Cow position:
               
chr11:63165669-63165552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
423-603
               

               
Cow position:
               
chr11:84764014-84764196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
19, 44
               

               
Conread position:
               
426-544
               

               
Cow position:
               
chr11:8107425-8107545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
20, 54
               

               
Conread position:
               
426-607
               

               
Cow position:
               
chr11:58185865-58186055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
91, 14
               

               
Conread position:
               
427-585
               

               
Cow position:
               
chr11:905401-905236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
15, 146
               

               
Conread position:
               
428-608
               

               
Cow position:
               
chr11:48315414-48315215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
429-607
               

               
Cow position:
               
chr11:63478361-63478545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
13, 51
               

               
Conread position:
               
430-537
               

               
Cow position:
               
chr11:17195846-17195737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
430-604
               

               
Cow position:
               
chr11:9699260-9699075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
430-608
               

               
Cow position:
               
chr11:15607987-15607805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
12, 40
               

               
Conread position:
               
436-607
               

               
Cow position:
               
chr11:46784465-46784646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
6, 38
               

               
Conread position:
               
440-607
               

               
Cow position:
               
chr11:67948746-67948574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
445-544
               

               
Cow position:
               
chr11:34238570-34238470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
445-607
               

               
Cow position:
               
chr11:25320186-25320347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
69, 96
               

               
Conread position:
               
445-608
               

               
Cow position:
               
chr11:42206422-42206600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
456-608
               

               
Cow position:
               
chr11:62483950-62483790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
457-579
               

               
Cow position:
               
chr11:53318568-53318687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
59, 40
               

               
Conread position:
               
457-607
               

               
Cow position:
               
chr11:19508270-19508423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
457-608
               

               
Cow position:
               
chr11:74839623-74839787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
459-607
               

               
Cow position:
               
chr11:35276284-35276434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
59, 13
               

               
Conread position:
               
459-607
               

               
Cow position:
               
chr11:48247047-48246895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
55, 140
               
Show alignments to all cow chromosomes.